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ME1 Gene

protein-coding   GIFtS: 62

GC06M083977
malic enzyme 1, NADP(+)-dependent, cytosolic
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 1.1.1.40 3
HUMNDME 2
MES 2
NADP-ME 3
OTTHUMP00000016792 2
Descriptions
Malic enzyme 1 3
Malic enzyme, cytoplasmic 2
NADP-dependent malic enzyme 2
cytosolic malic enzyme 1 2
malate dehydrogenase 2
malic enzyme 1, NADP(+)-dependent, cytosolic 2
malic enzyme 1, soluble 2
pyruvic-malic carboxylase 2
External Ids
HGNC: 69831
Entrez Gene: 41992
UniProtKB: P481633
Ensembl: ENSG000000658337
Search outside databases for aliases for ME1 gene

Previous GC identifers: GC06M083867 GC06M083916

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for ME1:
This gene encodes a cytosolic, NADP-dependent enzyme that generates NADPH for fatty acid
biosynthesis. The activity of this enzyme, the reversible oxidative decarboxylation of malate,
links the glycolytic and citric acid cycles. The regulation of expression for this gene is
complex. Increased expression can result from elevated levels of thyroid hormones or by higher
proportions of carbohydrates in the diet. [provided by RefSeq]

Gene Wiki entry for ME1
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ME1 gene  

Entrez Gene cytogenetic band: 6q12   Ensembl cytogenetic band:  6q14.2   HGNC cytogenetic band: 6q12

ME1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M083977:     (about GC identifiers)

Start:
83,976,827 bp from pter
End:
84,197,498 bp from pter
Size:
220,672 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000006.10  NT_007299.12  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163 (See protein sequence)
Recommended Name: NADP-dependent malic enzyme  
Size: 572 amino acids; 64150 Da
Cofactor: Divalent metal cations. Prefers magnesium or manganese (By similarity)
Subunit: Homotetramer
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :
2AW5 (3D)    
Secondary accessions: Q16797 Q16855 Q53F72 Q5VWA2 Q9BWX8 Q9H1W3 Q9UIY4

REFSEQ proteins: NP_002386.1  

ENSEMBL proteins: 
ENSP00000358719 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (ME1)
Human Recombinant Proteins from Abnova (ME1)
              OriGene Purified Recombinant Human Protein: ME1 

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IDA18029348
GO:0005730NOT nucleolus IDA18029348
GO:0005737 cytoplasm IEA--
GO:0005829 cytosol ISS--
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Antibodies for ME1: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for ME1
Browse R&D Systems for Antibodies
Antibodies from Abcam (ME1), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (ME1)
Novus Biologicals Antibodies for ME1

Assays for ME1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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5 InterPro domains/families:
 IPR015884 Malic_enzyme_CS
 IPR012301 Malic_N
 IPR012302 Malic_NAD_bd
 IPR001891 Malic_OxRdtase
 IPR016040 NAD(P)-bd_dom


   GeneDecks  ME1 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P48163

ProtoNet protein and cluster: P48163

1 Blocks protein family: IPB001891 Malic oxidoreductase

UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163
Similarity: Belongs to the malic enzymes family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ME1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ME1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002395

              Applied Biosystems Silencer® siRNAs for ME1

              Sigma-Aldrich siRNA and siRNA Panels for ME1  
                     Sigma-Aldrich shRNA for ME1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for ME1
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002395
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002395
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_002395 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_002395

UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163
Catalytic activity: (S)-malate + NADP(+) = pyruvate + CO(2) + NADPH
Enzyme Number (IUBMB): EC 1.1.1.40 

Genatlas biochemistry entry for ME1:
malic enzyme 1,soluble

3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Me1):

homeostasis/metabolismlife span-post-weaning/agingno phenotypic analysis

5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0004473 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity ISS--
GO:0005488 binding IEA--
GO:0009055 electron carrier activity TAS7622060
GO:0016491 oxidoreductase activity IEA--
GO:0030145 manganese ion binding IDA7622060
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for  ME1  (Your Favorite Gene powered by Ingenuity) 
 Pyruvate Metabolism
 TR/RXR Activation

   GeneDecks  ME1 for the pathways selected above  
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2 Kegg Pathways  (Kegg details for ME1):
 hsa00620 Pyruvate metabolism
 hsa03320 PPAR signaling pathway

   GeneDecks  ME1 for the pathways selected above  
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5/45 Interacting proteins for ME1 (ENSP000003587193) via UniProtKB, MINT, and/or STRING (see all 45 )
InteractantInteraction Details
GeneCardExternal ID(s)
MDH2ENSP000003270703STRING (score=.932)
LDHCENSP000002807043STRING (score=.903)
MDH1ENSP000002331143STRING (score=.903)
PCENSP000003479003STRING (score=.9)
ACOX1ENSP000003016083STRING (score=.899)
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5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0005975 carbohydrate metabolic process NAS8187880
GO:0006108 malate metabolic process IDA7622060 8187880
GO:0006741 NADP biosynthetic process TAS8187880
GO:0009725 response to hormone stimulus ISS--
GO:0009743 response to carbohydrate stimulus TAS8187880
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ME1
3 Novoseek chemical compound relationships for ME1 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
phosphoenolpyruvate 69.32 5 8704306 (1), 15290293 (1), 16464879 (1), 16228537 (1) (see all 5)
isocitrate 52.22 1 11326687 (1)
pyruvate 48.53 3 12685039 (1), 18445600 (1), 17928289 (1)
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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ME1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ME1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002395

              Sigma-Aldrich siRNA and siRNA Panels for ME1  
                     Sigma-Aldrich shRNA for ME1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_002395  

REFSEQ mRNAs for ME1 gene: 

NM_002395.3   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_002395  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002395
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002395
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_002395 

Additional cDNA sequence: 

AJ420574.1 AK223417.1 AK289783.1 AK301875.1 AK302777.1 BC017403.1 BC025246.1 CR591849.1 
CR601714.1 L34035.1 U43944.1 X77244.1 

10 DOTS entries:

DT.214180  DT.121372107  DT.92449275  DT.100797729  DT.92449265  DT.100797733  DT.100797737  DT.121372126 
DT.95269623  DT.121372118 

24/236 AceView cDNA sequences (see all 236 ):

F02108 NM_002395 BG192549 BM720874 AW612304 BG110590 X77244 CB143689 
CB120022 CR591849 BQ127991 CB160273 CD108416 BF568564 AI337365 U43944 
BX371460 BC025246 T16759 AA927767 CR601714 BU181299 BX488025 AV682650 

highest scoring ESTs for ME1:

U43944 AI857682 AL041987 AU279729 AW002307 AW662146 BC025246 BE206224 BF434425 BG764703 

Unigene Cluster for ME1:

Malic enzyme 1, NADP(+)-dependent, cytosolic
Hs.21160  [show with all ESTs]
Unigene Representative Sequence: NM_002395


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000369705  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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ME1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for ME1

1 / 2 / 3

9 probe-sets matching ME1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
837_s_at2, 3 U95-A 1 1.00 1.00 0.91 1.45 U43944 1.00 1.00 1.00 1

33644_at2, 3 U95-A 1 1.00 1.00 0.67 0.39 L34035 0.80 1.00 0.91 1
31824_at2, 3 U95-A 1 1.00 1.00 0.94 1.22 AL049699 0.20 0.50 0.38 1

204058_at2, 3 U133-A 1 1.00 1.00 -- -- AL049699 0.20 0.50 0.38 1

211204_at2, 3 U133-A 1 1.00 1.00 -- -- L34035 0.80 1.00 0.91 1

204059_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002395 0.60 1.00 0.82 1

204058_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

211204_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

204059_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  ME1 for binary patterns associated with the probe-sets selected above  
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Data from (Publications) and GNF BioGPS
    About these images
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CGAP SAGE TAG: AGACAATTTT

SOURCE GeneReport for Unigene cluster: Hs.21160

Expression variation in blood from EXPOLDB for ME1

UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163
Tissue specificity: Expressed in all tissues tested including liver, placenta and white adipose
tissue

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for ME1 gene from 5/19 species (see all 19 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
ME11   -- malic enzyme 1, NADP(+)-dependent, cytosolic 92.26(n)
93.24(a)
403709  XM_532217.2  XP_532217.2 
chimpanzee
(Pan troglodytes)
ME11   -- malic enzyme 1, NADP(+)-dependent, cytosolic 99.77(n)
99.65(a)
462853  XM_518610.2  XP_518610.2 
cow
(Bos taurus)
ME11   -- malic enzyme 1, NADP(+)-dependent, cytosolic 91.56(n)
92.66(a)
540985  XM_613987.3  XP_613987.3 
rat
(Rattus norvegicus)
Me11   -- malic enzyme 1, NADP(+)-dependent, cytosolic 86.32(n)
90.41(a)
24552  NM_012600.1  NP_036732.1 
mouse
(Mus musculus)
Me11, 5 9 (48.00 cM)5
malic enzyme 1, NADP(+)-dependent, cytosolic1, 5 86.25(n)1
89.34(a)1
174361  NM_008615.11  NP_032641.11 
 AK0049805  AK0063875  (see all 28)
About this table        Species with no ortholog for ME1

ENSEMBL Gene Tree for ME1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
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Paralogs for ME1 gene
ME32  ME22  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/1073 NCBI SNPs in ME1 are shown (see all 1073 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 311)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 6 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs38121421,2
A,C,F84198112(-) GGCGAA/GGGTTG 1 -- ng312Minor allele frequency- G:0.28MN EA 1252
rs38121441,2
A,C,F84197972(-) CCCCTA/CGGTGT 1 -- ng312Minor allele frequency- C:0.28MN EA 1252
rs73569741,2
C,H84004169(+) TAATCC/TTTTTG 1 G/R mis1 ese34Minor allele frequency- T:0.00EU EA WA 412
rs73569751,2
C,H84004220(+) TAAACC/TTTCTT 1 G/S mis1 trp34Minor allele frequency- T:0.00EU EA WA 418
rs77508001,2
F,H84199474(+) TCATAT/CGTAGT 1 -- ng314Minor allele frequency- C:0.01EU EA WA 416
--
rs22309021,2
A,F84004272(-) GCTGGA/GGAGGC 3 E TE fra1 mis10--------
--
rs132029231,2
A83976428(+) TATAtA/Tttttt 1 -- ng510--------
rs38121431,2
C84198001(-) CCCCTC/GACGAG 1 -- ng310--------
rs11802451,2
C83977603(-) TGTCCC/TGAGGT 1 -- ut31 ese30--------
rs47069971,2
F84197445(+) GCGCGG/ATRCAG 1 -- ut51 ese32Minor allele frequency- A:0.04MN EA 1252
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HapMap Linkage Disequilibrium images for ME1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 154250

Genetic Association Database: ME1
Human Genome Epidemiology Navigator: ME1 (3 documents)

(Possibly Related Articles in Doctor's Guide)
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  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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10/50 PubMed articles for ME1 gene (see all 50 ):
(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 4199 HGNC: 6983 AceView: ME1 Ensembl:ENSG00000065833 euGenes: HUgn4199
ECgene: ME1 H-InvDB: ME1
(According to HUGE)
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  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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NameDescription
SHMPDhttp://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=ME1
(Available from WIS Yeda, Salk, Tufts)
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  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for ME1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for ME1 Antibodies for ME1
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for ME1 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Tagged/untagged cDNA clones
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 Purified proteins from HEK293T cells
 Western blot validated antibodies
 shRNA in GFP-retroviral vector
 Search Tocris compounds for ME1




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for ME1

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