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Aliases & Descriptions for ME1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.1.1.40 3 | | HUMNDME 2 | | MES 2 | | NADP-ME 3 | | OTTHUMP00000016792 2 |
| | | Descriptions |
|---|
| Malic enzyme 1 3 | | Malic enzyme, cytoplasmic 2 | | NADP-dependent malic enzyme 2 | | cytosolic malic enzyme 1 2 | | malate dehydrogenase 2 | | malic enzyme 1, NADP(+)-dependent, cytosolic 2 | | malic enzyme 1, soluble 2 | | pyruvic-malic carboxylase 2 |
|
| | Search outside databases for aliases for ME1 genePrevious GC identifers: GC06M083867 GC06M083916 |
Summaries for ME1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ME1: This gene encodes a cytosolic, NADP-dependent enzyme that generates NADPH for fatty acid biosynthesis. The activity of this enzyme, the reversible oxidative decarboxylation of malate, links the glycolytic and citric acid cycles. The regulation of expression for this gene is complex. Increased expression can result from elevated levels of thyroid hormones or by higher proportions of carbohydrates in the diet. [provided by RefSeq] Gene Wiki entry for ME1 |
Genomic Location for ME1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ME1 gene 
Entrez Gene cytogenetic band: 6q12 Ensembl cytogenetic band: 6q14.2 HGNC cytogenetic band: 6q12ME1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M083977:
(about GC identifiers)
Start:
|
83,976,827 bp from pter |
End:
|
84,197,498 bp from pter |
Size:
|
220,672 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007299.12
| Proteins for ME1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163 (See
protein sequence)Recommended Name: NADP-dependent malic enzyme Size: 572 amino acids; 64150 Da
Cofactor: Divalent metal cations. Prefers magnesium or manganese (By similarity)
Subunit: Homotetramer
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :2AW5 (3D)
 
Secondary accessions: Q16797 Q16855 Q53F72 Q5VWA2 Q9BWX8 Q9H1W3 Q9UIY4REFSEQ proteins: NP_002386.1
ENSEMBL proteins: ENSP00000358719
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ME1 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ME1: Assays for ME1: | Protein
Domains/ Families for ME1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P48163
ProtoNet protein and cluster: P48163 1 Blocks protein family: IPB001891 Malic oxidoreductase
UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163Similarity: Belongs to the malic enzymes family | Gene Function for ME1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002395
Applied Biosystems Silencer® siRNAs for ME1
Sigma-Aldrich siRNA and siRNA Panels for ME1  Sigma-Aldrich shRNA for ME1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002395                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002395                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002395 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002395
UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163Catalytic activity: (S)-malate + NADP(+) = pyruvate + CO(2) + NADPHEnzyme Number (IUBMB): EC 1.1.1.40 Genatlas biochemistry entry for ME1:malic enzyme 1,soluble3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Me1):
5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9
): About this table | Pathways & Interactions for ME1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for ME1 (Your Favorite Gene powered by Ingenuity) 
5/45 Interacting proteins for ME1 (ENSP000003587193) via UniProtKB, MINT, and/or STRING (see all 45
)About this table
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for ME1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ME1 3 Novoseek chemical compound relationships for ME1 gene
About this table
|
Transcripts for ME1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002395
Sigma-Aldrich siRNA and siRNA Panels for ME1  Sigma-Aldrich shRNA for ME1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002395 REFSEQ mRNAs for ME1 gene: NM_002395.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002395               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002395                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002395                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002395  Additional cDNA sequence: AJ420574.1 AK223417.1 AK289783.1 AK301875.1 AK302777.1 BC017403.1 BC025246.1 CR591849.1 CR601714.1 L34035.1 U43944.1 X77244.1 10 DOTS entries: DT.214180 DT.121372107 DT.92449275 DT.100797729 DT.92449265 DT.100797733 DT.100797737 DT.121372126 DT.95269623 DT.121372118 24/236 AceView cDNA sequences (see all 236
):F02108 NM_002395 BG192549 BM720874 AW612304 BG110590 X77244 CB143689 CB120022 CR591849 BQ127991 CB160273 CD108416 BF568564 AI337365 U43944 BX371460 BC025246 T16759 AA927767 CR601714 BU181299 BX488025 AV682650
highest scoring ESTs for ME1:U43944 AI857682 AL041987 AU279729 AW002307 AW662146 BC025246 BE206224 BF434425 BG764703 Unigene Cluster for ME1: Malic enzyme 1, NADP(+)-dependent, cytosolic Hs.21160 [show with all ESTs]Unigene Representative Sequence: NM_002395
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000369705
|
Expression for ME1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ME1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ME1
1 / 2 / 3 9 probe-sets matching ME1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGACAATTTT
SOURCE GeneReport for Unigene cluster: Hs.21160
Expression variation in blood from EXPOLDB for ME1 UniProtKB/Swiss-Prot: MAOX_HUMAN, P48163Tissue specificity: Expressed in all tissues tested including liver, placenta and white adipose tissue |
Orthologs for ME1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ME1 gene from 5/19 species (see all 19
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
ME11 |
-- |
malic enzyme 1, NADP(+)-dependent, cytosolic |
92.26(n) 93.24(a) |
403709 XM_532217.2 XP_532217.2 |
chimpanzee (Pan troglodytes) |
ME11 |
-- |
malic enzyme 1, NADP(+)-dependent, cytosolic |
99.77(n) 99.65(a) |
462853 XM_518610.2 XP_518610.2 |
cow (Bos taurus) |
ME11 |
-- |
malic enzyme 1, NADP(+)-dependent, cytosolic |
91.56(n) 92.66(a) |
540985 XM_613987.3 XP_613987.3 |
rat (Rattus norvegicus) |
Me11 |
-- |
malic enzyme 1, NADP(+)-dependent, cytosolic |
86.32(n) 90.41(a) |
24552 NM_012600.1 NP_036732.1 |
mouse (Mus musculus) |
Me11, 5 |
9 (48.00 cM)5
|
malic enzyme 1, NADP(+)-dependent, cytosolic1, 5 |
86.25(n)1 89.34(a)1 |
174361 NM_008615.11 NP_032641.11 AK0049805 AK0063875 (see all 28) |
About this table Species with no ortholog for ME1
ENSEMBL Gene Tree for ME1 | Paralogs for ME1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ME1 gene
- ME32 ME22
|
SNPs/Variants for ME1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ME1 (up to first 250kb)
|
Disorders & Mutations for ME1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 154250
Genetic Association Database: ME1 Human Genome Epidemiology Navigator: ME1 (3 documents)
|
Medical News for ME1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ME1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/50 PubMed articles for ME1 gene (see all 50
):- Characterization of cytosolic malic enzyme in human tumor cells. (PubMed id 8187880)2, 3, 4 Loeber G.... Ahorn H. (1994)
- Cloning, sequencing and functional expression of a cDNA encoding a NADP-dependent malic enzyme from human liver. (PubMed id 7622060)1, 3, 4 Gonzalez-Manchon C.... Parrilla R. (1995)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)3, 4 Mungall A.J.... Beck S. (2003)
- The interaction between microsomal epoxide hydrolase polymorphisms and cumulative cigarette smoking in different histological subtypes of lung cancer. (PubMed id 11352855)3, 6 Zhou W....Christiani D.C. (2001)
- Nonidentity of the cDNA sequence of human breast cancer cell malic enzyme to that from the normal human cell. (PubMed id 8804575)3, 4 Chou W.Y.... Chang G.G. (1996)
- A new locus for autosomal dominant dilated cardiomyopathy identified on chromosome 6q12-q16. (PubMed id 11085912)1, 3 Sylvius N....Komajda M. (2001)
- Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)3 Barbe L....Andersson-Svahn H. (2008)
- Multiple genetic variants along candidate pathways influence plasma high-density lipoprotein cholesterol concentrations. (PubMed id 18660489)3 Lu Y....Boer J.M. (2008)
- Determinants of the dual cofactor specificity and substrate cooperativity of the human mitochondrial NAD(P)+-dependent malic enzyme: functional roles of glutamine 362. (PubMed id 16757477)3 Hsieh J.Y....Hung H.C. (2006)
|
Search for ME1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ME1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ME1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ME1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| SHMPD | http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=ME1 |
|
| | | About This Section
| --
| Services for ME1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ME1:

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