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MDP1 Gene

protein-coding   GIFtS: 45
GCID: GC14M024683

Magnesium-Dependent Phosphatase 1

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Magnesium-Dependent Phosphatase 11 2     EC 3.1.3.483
fructosamine-6-phosphatase1 2     S5
MDP-12 3     SFTB35
FN6PASE2     SFTPB5
EC 3.1.3.-3     

External Ids:    HGNC: 287811   Entrez Gene: 1455532   Ensembl: ENSG000002139207   OMIM: 1786405   UniProtKB: Q86V883   

Export aliases for MDP1 gene to outside databases

Previous GC identifers: GC14M023754 GC14M004798


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MDP1 Gene:
MDP1 (magnesium-dependent phosphatase 1) is a protein-coding gene. GO annotations related to this gene include protein tyrosine phosphatase activity. An important paralog of this gene is NEDD8-MDP1.

UniProtKB/Swiss-Prot: MGDP1_HUMAN, Q86V88
Function: Magnesium-dependent phosphatase which may act as a tyrosine phosphatase (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000014.8  NC_018925.2  NT_026437.13  
Regulatory elements:
   Search for regulatory transcription factor binding sites for MDP1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMDP1 promoter sequence
   Search Chromatin IP Primers for MDP1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MDP1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q12   Ensembl cytogenetic band:  14q12   HGNC cytogenetic band: 14q12

MDP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MDP1 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M024683:  view genomic region     (about GC identifiers)

Start:
24,683,143 bp from pter      End:
24,685,276 bp from pter
Size:
2,134 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: MGDP1_HUMAN, Q86V88 (See protein sequence)
Recommended Name: Magnesium-dependent phosphatase 1  
Size: 176 amino acids; 20109 Da
Cofactor: Magnesium (By similarity)
1 PDB 3D structure from and Proteopedia for MDP1:
2WM8 (3D)    
Secondary accessions: Q86Y84 Q8NAD9
Alternative splicing: 3 isoforms:  Q86V88-1   Q86V88-2   Q86V88-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for MDP1: NX_Q86V88

Explore proteomics data for MDP1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See MDP1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001186750.1  NP_001186751.1  NP_612485.2  

    ENSEMBL proteins: 
     ENSP00000288087   ENSP00000380045  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    4 InterPro protein domains:
     IPR010033 HAD_SF_ppase_IIIC
     IPR023214 HAD-like_dom
     IPR010036 MDP_1_eu_arc
     IPR024734 MDP_1_eu

    Graphical View of Domain Structure for InterPro Entry Q86V88

    ProtoNet protein and cluster: Q86V88

    UniProtKB/Swiss-Prot: MGDP1_HUMAN, Q86V88
    Similarity: Belongs to the HAD-like hydrolase superfamily


    Find genes that share domains with MDP1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MGDP1_HUMAN, Q86V88
    Function: Magnesium-dependent phosphatase which may act as a tyrosine phosphatase (By similarity)
    Catalytic activity: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate
    Enzyme regulation: Inhibited by vanadate and zinc, and slightly by calcium (By similarity)

         Enzyme Numbers (IUBMB): EC 3.1.3.481 EC 3.1.3.-1

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004725protein tyrosine phosphatase activity IEA--
    GO:0005515protein binding ----
    GO:0016791phosphatase activity ----
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with MDP1           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for MDP1:
     Decreased viability with pacli 

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    cytoskeleton1
    extracellular1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MDP1
    Interactions:

        Search GeneGlobe Interaction Network for MDP1

    STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

    4 Interacting proteins for MDP1 (Q86V882, 3 ENSP000002880874) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SYT17Q9BSW72, 3, ENSP000003475384MINT-67169 I2D: score=1 STRING: ENSP00000347538
    ATG7ENSP000003464374STRING: ENSP00000346437
    CCT6AENSP000002756034STRING: ENSP00000275603
    CCT6BENSP000003271914STRING: ENSP00000327191
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Tocris compounds for MDP1 (MGDP1)

    3 HMDB Compounds for MDP1    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    MagnesiumMagnesium (see all 2)7439-95-4--
    PhosphateNFB Orthophosphate (see all 13)14265-44-2--



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
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    REFSEQ mRNAs for MDP1 gene (3 alternative transcripts): 
    NM_001199821.1  NM_001199822.1  NM_138476.3  

    Unigene Cluster for MDP1:

    Magnesium-dependent phosphatase 1
    Hs.220963  [show with all ESTs]
    Unigene Representative Sequence: BQ646916
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000288087 ENST00000530222 ENST00000396833 ENST00000532557 ENST00000531553
    ENST00000525696 ENST00000533536 ENST00000532742 ENST00000528849 ENST00000466422

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    hsa-miR-377 hsa-miR-3182
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    Additional mRNA sequence: 

    AK312038.1 BC046912.1 BC051382.1 

    18 DOTS entries:

    DT.313051  DT.95275589  DT.100696524  DT.120731565  DT.75196995  DT.97842298  DT.100782668  DT.455838 
    DT.100782666  DT.95225587  DT.95275587  DT.92420964  DT.100041981  DT.120731465  DT.40284385  DT.91915964 
    DT.99950778  DT.436722 

    Selected AceView cDNA sequences (see all 554):

    CD518977 AI703334 AI032042 BM710198 Z45392 AA725123 BC051382 AI148707 
    BU185044 BM671619 AA295939 BM988359 AI571450 BQ669080 AI718962 BQ949724 
    BM768512 Z41108 BQ774333 BQ652841 BM766895 BQ669837 AI138609 BM478158 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    MDP1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCGCGGCTAC
    MDP1 Expression
    About this image

    MDP1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    MDP1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.220963
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for MDP1 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Mdp11 , 5 magnesium-dependent phosphatase 11, 5 84.66(n)1
    84.66(a)1
      14 (28.19 cM)5
    678811  NM_023397.41  NP_075886.11 
     556578795 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    65(a)
    1 → many
    GL343400.1(95841-99087)
    zebrafish
    (Danio rerio)
    Actinopterygii si:dkeyp-27c8.21 si:dkeyp-27c8.2 54.99(n)
    54.78(a)
      557652  XM_680749.3  XP_685841.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes (YER134C)4 Magnesium-dependent acid phosphatase, member of the more   --   5(437803-437267) 856873  NP_011060.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G141101 AT2G14110 51.54(n)
    43.97(a)
      815897  NM_126983.3  NP_179027.2 


    ENSEMBL Gene Tree for MDP1 (if available)
    TreeFam Gene Tree for MDP1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for MDP1 gene
    NEDD8-MDP12  
    2 SIMAP similar genes for MDP1 using alignment to 1 protein entry:     MGDP1_HUMAN:
    MDP-1    NEDD8-MDP1

    Find genes that share paralogs with MDP1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 178640   
    OMIM disorders: 265120  

    Find genes that share disorders with MDP1           About GenesLikeMe


    Export disorders for MDP1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MDP1 gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with MDP1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Magnesium-dependent phosphatase-1 is a protein-fructosamine-6-phosphatase potentially involved in glycation repair. (PubMed id 16670083)1, 3, 9 Fortpied J....Van Schaftingen E. (J. Biol. Chem. 2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. MDP-1: A novel eukaryotic magnesium-dependent phosphatase. (PubMed id 10889041)1, 3 Selengut J.D. and Levine R.L. (Biochemistry 2000)
    5. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PubMed id 23824909)1 Chen Y....Ge F. (amp 2013)
    6. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    7. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (Sci. Signal. 2009)
    8. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 145553 HGNC: 28781 AceView: NEDD8 Ensembl:ENSG00000213920 euGenes: HUgn145553
    ECgene: MDP1 H-InvDB: MDP1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for MDP1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MDP1 gene:
    Search GeneIP for patents involving MDP1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Search Tocris compounds for MDP1 (MGDP1)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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