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Aliases for MDM1 Gene

Aliases for MDM1 Gene

  • Mdm1 Nuclear Protein 2 3 5
  • Mdm4, Transformed 3T3 Cell Double Minute 1, P53 Binding Protein (Mouse) 2
  • Mdm1 Nuclear Protein Homolog (Mouse) 2

External Ids for MDM1 Gene

Previous GeneCards Identifiers for MDM1 Gene

  • GC12M068204
  • GC08U900012
  • GC12M066975
  • GC12M068688
  • GC12M065739

Summaries for MDM1 Gene

Entrez Gene Summary for MDM1 Gene

  • This gene encodes a microtubule-binding nuclear protein that localizes to the centrioles of dividing cells and differentiating multiciliated cells, and negatively regulates centriole duplication. The encoded protein is closely associated with the centriole barrel, and resides in the centriole lumen. naturally occurring mutations in the orthologous mouse gene are associated with age-related retinal degeneration. [provided by RefSeq, Aug 2017]

GeneCards Summary for MDM1 Gene

MDM1 (Mdm1 Nuclear Protein) is a Protein Coding gene. Diseases associated with MDM1 include Retinitis Pigmentosa 3.

UniProtKB/Swiss-Prot for MDM1 Gene

  • Microtubule-binding protein that negatively regulates centriole duplication. Binds to and stabilizes microtubules (PubMed:26337392).

Additional gene information for MDM1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MDM1 Gene

Genomics for MDM1 Gene

Regulatory Elements for MDM1 Gene

Enhancers for MDM1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H068223 1.4 FANTOM5 Ensembl ENCODE 29.7 +109.0 109006 0 ELF3 PKNOX1 ATF1 TBL1XR1 RB1 ARID4B SIN3A BMI1 BATF ZNF2 MDM1 IL22 LINC02384 NUP107 LINC02421 IL26 GC12P068213
GH12H068331 1.5 Ensembl ENCODE dbSUPER 21.8 -0.6 -639 3 HDGF PKNOX1 ATF1 ARID4B SIN3A YY1 GLIS2 ELK1 ZNF143 ZNF207 NUP107 MDM1 CPSF6 DYRK2 ENSG00000256273 LINC02421 PIR51506 GC12P068332
GH12H068361 2 FANTOM5 Ensembl ENCODE dbSUPER 12.4 -33.0 -32958 7 HDGF FOXA2 PKNOX1 ARID4B SIN3A YY1 ZNF143 FOS SP3 ZC3H11A NUP107 MDM1 LINC02384 RPL10P12 SNORA70G CPSF6 KRT8P39 RPL7P42 LOC100507250 RAP1B
GH12H068358 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.4 -27.2 -27164 2 HDAC1 PKNOX1 ATF1 TBL1XR1 RB1 FEZF1 BRCA1 ZBTB7B RAD21 YY1 MDM1 LINC02384 RAP1B LOC100507250 NUP107 RPL7P42 SNORA70G RPL10P12 ENSG00000256273 GC12P068422
GH12H068609 2 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -280.3 -280290 6 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 NUP107 RAP1B CPSF6 MDM2 KRT8P39 CPM LINC02384 MDM1 RPL10P12 IFNG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MDM1 on UCSC Golden Path with GeneCards custom track

Promoters for MDM1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000053593 81 1401 HDGF PKNOX1 ATF1 ARID4B SIN3A YY1 GLIS2 ZNF143 ZNF207 FOS

Genomic Location for MDM1 Gene

Chromosome:
12
Start:
68,272,443 bp from pter
End:
68,332,381 bp from pter
Size:
59,939 bases
Orientation:
Minus strand

Genomic View for MDM1 Gene

Genes around MDM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MDM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MDM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MDM1 Gene

Proteins for MDM1 Gene

  • Protein details for MDM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TC05-MDM1_HUMAN
    Recommended name:
    Nuclear protein MDM1
    Protein Accession:
    Q8TC05
    Secondary Accessions:
    • B4DM65
    • E7EPQ3
    • O43406
    • Q8WTV9
    • Q9NR04

    Protein attributes for MDM1 Gene

    Size:
    714 amino acids
    Molecular mass:
    80735 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MDM1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MDM1 Gene

Post-translational modifications for MDM1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MDM1 Gene

Domains & Families for MDM1 Gene

Gene Families for MDM1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for MDM1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MDM1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TC05

UniProtKB/Swiss-Prot:

MDM1_HUMAN :
  • Belongs to the MDM1 family.
Family:
  • Belongs to the MDM1 family.
genes like me logo Genes that share domains with MDM1: view

Function for MDM1 Gene

Molecular function for MDM1 Gene

UniProtKB/Swiss-Prot Function:
Microtubule-binding protein that negatively regulates centriole duplication. Binds to and stabilizes microtubules (PubMed:26337392).

Phenotypes From GWAS Catalog for MDM1 Gene

Gene Ontology (GO) - Molecular Function for MDM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008017 microtubule binding IMP 26337392
genes like me logo Genes that share ontologies with MDM1: view
genes like me logo Genes that share phenotypes with MDM1: view

Animal Model Products

CRISPR Products

miRNA for MDM1 Gene

miRTarBase miRNAs that target MDM1

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MDM1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MDM1 Gene

Localization for MDM1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MDM1 Gene

Nucleus. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole. Note=Localizes to the centriole lumen. {ECO:0000269 PubMed:26337392}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MDM1 gene
Compartment Confidence
cytoskeleton 5
nucleus 5
cytosol 5

Subcellular locations from the

Human Protein Atlas (HPA)
  • Centrosome (3)
  • Cytosol (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for MDM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 26337392
GO:0005737 cytoplasm IEA --
GO:0005813 centrosome IDA 26337392
GO:0005814 centriole IDA,IEA 26337392
GO:0005815 microtubule organizing center IEA --
genes like me logo Genes that share ontologies with MDM1: view

Pathways & Interactions for MDM1 Gene

No Data Available

Interacting Proteins for MDM1 Gene

Gene Ontology (GO) - Biological Process for MDM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046600 negative regulation of centriole replication IMP 26337392
GO:0060041 retina development in camera-type eye IBA --
genes like me logo Genes that share ontologies with MDM1: view

No data available for Pathways by source and SIGNOR curated interactions for MDM1 Gene

Drugs & Compounds for MDM1 Gene

No Compound Related Data Available

Transcripts for MDM1 Gene

Unigene Clusters for MDM1 Gene

Mdm1 nuclear protein homolog (mouse):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MDM1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MDM1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17 ^
SP1: - - - - - - - -
SP2: - - - - - - - - -
SP3:
SP4: - - - -
SP5: - - -
SP6: -
SP7:
SP8: -
SP9: - -
SP10: -
SP11:

ExUns: 18 ^ 19a · 19b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for MDM1 Gene

GeneLoc Exon Structure for
MDM1
ECgene alternative splicing isoforms for
MDM1

Expression for MDM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MDM1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MDM1 Gene

This gene is overexpressed in Colon - Sigmoid (x5.0).

Protein differential expression in normal tissues from HIPED for MDM1 Gene

This gene is overexpressed in Neutrophil (33.9), Peripheral blood mononuclear cells (18.1), and Tlymphocyte (8.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MDM1 Gene



Protein tissue co-expression partners for MDM1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MDM1 Gene:

MDM1

SOURCE GeneReport for Unigene cluster for MDM1 Gene:

Hs.655702

Evidence on tissue expression from TISSUES for MDM1 Gene

  • Nervous system(4.5)
  • Liver(4.1)
genes like me logo Genes that share expression patterns with MDM1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MDM1 Gene

Orthologs for MDM1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MDM1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MDM1 33 34
  • 99.53 (n)
dog
(Canis familiaris)
Mammalia MDM1 33 34
  • 87.4 (n)
cow
(Bos Taurus)
Mammalia MDM1 33 34
  • 87.01 (n)
mouse
(Mus musculus)
Mammalia Mdm1 33 16 34
  • 77.95 (n)
rat
(Rattus norvegicus)
Mammalia Mdm1 33
  • 77.83 (n)
oppossum
(Monodelphis domestica)
Mammalia MDM1 34
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MDM1 34
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves MDM1 33 34
  • 60.55 (n)
lizard
(Anolis carolinensis)
Reptilia MDM1 34
  • 43 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mdm1 33
  • 55.39 (n)
zebrafish
(Danio rerio)
Actinopterygii mdm1 33 34
  • 49.73 (n)
Species where no ortholog for MDM1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MDM1 Gene

ENSEMBL:
Gene Tree for MDM1 (if available)
TreeFam:
Gene Tree for MDM1 (if available)

Paralogs for MDM1 Gene

No data available for Paralogs for MDM1 Gene

Variants for MDM1 Gene

Sequence variations from dbSNP and Humsavar for MDM1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000044607 -- 68,303,994(+) GCAAT(A/T)TGGGA intron-variant
rs1000072076 -- 68,311,142(+) TTTGT(C/T)TTATT intron-variant
rs1000111893 -- 68,305,439(+) CAAAA(A/G)GCATC intron-variant
rs1000144359 -- 68,305,141(+) TAGCA(C/T)ATAAA intron-variant
rs1000326555 -- 68,312,079(+) AAAAA(C/T)TGGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MDM1 Gene

Variant ID Type Subtype PubMed ID
esv2480424 CNV deletion 19546169
esv3629846 CNV gain 21293372

Variation tolerance for MDM1 Gene

Residual Variation Intolerance Score: 62.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.07; 80.38% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MDM1 Gene

Human Gene Mutation Database (HGMD)
MDM1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MDM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MDM1 Gene

Disorders for MDM1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MDM1 Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 3
  • rp3
- elite association - COSMIC cancer census association via MalaCards
Search MDM1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for MDM1

Genetic Association Database (GAD)
MDM1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MDM1
genes like me logo Genes that share disorders with MDM1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MDM1 Gene

Publications for MDM1 Gene

  1. MDM1 is a microtubule-binding protein that negatively regulates centriole duplication. (PMID: 26337392) Van de Mark D … Stearns T (Molecular biology of the cell 2015) 3 4 60
  2. Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci. (PMID: 22365631) Greenwood TA … Kelsoe JR (Biological psychiatry 2012) 3 45 60
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 2 3 60
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 2 3 60
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60

Products for MDM1 Gene

Sources for MDM1 Gene

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