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Aliases for MDGA1 Gene

Aliases for MDGA1 Gene

  • MAM Domain Containing Glycosylphosphatidylinositol Anchor 1 2 3 5
  • Glycosylphosphatidylinositol-MAM 3 4
  • MAM Domain-Containing Protein 3 3 4
  • GPI And MAM Protein 3 4
  • MAMDC3 3 4
  • GPIM 3 4
  • MAM Domain-Containing Glycosylphosphatidylinositol Anchor Protein 1 3

External Ids for MDGA1 Gene

Previous GeneCards Identifiers for MDGA1 Gene

  • GC06U990326
  • GC06M037596
  • GC06M037647
  • GC06M037708
  • GC06M037319
  • GC06M037598
  • GC06M037739

Summaries for MDGA1 Gene

Entrez Gene Summary for MDGA1 Gene

  • This gene encodes a glycosylphosphatidylinositol (GPI)-anchored cell surface glycoprotein that is expressed predominantly in the developing nervous system. In addition to possessing several cell adhesion molecule-like domains, the mature protein has six Ig-like domains, a single fibronectin type III domain, a MAM domain and a C-terminal GPI-anchoring site. Studies in other mammals suggest this protein plays a role in cell adhesion, migration, and axon guidance and, in the developing brain, neuronal migration. In humans, this gene is associated with bipolar disorder and schizophrenia. [provided by RefSeq, Oct 2016]

GeneCards Summary for MDGA1 Gene

MDGA1 (MAM Domain Containing Glycosylphosphatidylinositol Anchor 1) is a Protein Coding gene. Diseases associated with MDGA1 include Schizophrenia. Among its related pathways are Metabolism of proteins and Post-translational modification- synthesis of GPI-anchored proteins. An important paralog of this gene is MDGA2.

UniProtKB/Swiss-Prot for MDGA1 Gene

  • Required for radial migration of cortical neurons in the superficial layer of the neocortex (By similarity). Plays a role in the formation or maintenance of inhibitory synapses. May function by inhibiting the activity of NLGN2.

Additional gene information for MDGA1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MDGA1 Gene

Genomics for MDGA1 Gene

Regulatory Elements for MDGA1 Gene

Enhancers for MDGA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H037704 1.8 FANTOM5 Ensembl ENCODE dbSUPER 70.9 -6.4 -6353 1 HDAC1 ATF1 RB1 RAD21 YY1 GLIS2 EGR1 ZNF366 KLF7 RUNX3 MDGA1 TBC1D22B GC06P041745 ENSG00000225945
GH06H037628 1.1 Ensembl ENCODE 35.6 +69.1 69137 2 ZNF766 ELK1 FOS CREM CEBPB NCOA1 ELF1 NFIC ZNF589 SMARCA4 MDGA1 GC06M038255 ENSG00000279942
GH06H037648 0.9 Ensembl ENCODE 34.1 +50.4 50441 1 KLF1 L3MBTL2 NRF1 MAX SP2 USF2 POLR2A EGR1 KLF8 MGA MDGA1 RNF8 GC06M038255 ENSG00000279942
GH06H037679 1.3 FANTOM5 ENCODE dbSUPER 16.7 +18.9 18922 2 HDGF PKNOX1 SIN3A ZNF76 KLF17 BMI1 GLIS2 ZNF143 ATF7 RUNX3 MDGA1 GC06M038255
GH06H037559 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +136.3 136345 7 HDGF SIN3A ZNF2 ZNF121 ZNF143 ATF7 RUNX3 NFYC REST ZNF592 CCDC167 CMTR1 LINC02520 MDGA1 TBC1D22B SRSF3 TMEM217 ENSG00000279942 MIR4462
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MDGA1 on UCSC Golden Path with GeneCards custom track

Promoters for MDGA1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000196437 1306 2401 ARNT SIN3A ZNF2 GLIS2 KLF7 SP3 ZNF610 SMARCA4 GLIS1 MXD3

Genomic Location for MDGA1 Gene

Chromosome:
6
Start:
37,630,679 bp from pter
End:
37,699,306 bp from pter
Size:
68,628 bases
Orientation:
Minus strand

Genomic View for MDGA1 Gene

Genes around MDGA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MDGA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MDGA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MDGA1 Gene

Proteins for MDGA1 Gene

  • Protein details for MDGA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NFP4-MDGA1_HUMAN
    Recommended name:
    MAM domain-containing glycosylphosphatidylinositol anchor protein 1
    Protein Accession:
    Q8NFP4
    Secondary Accessions:
    • A6NHG0
    • Q8NBE3

    Protein attributes for MDGA1 Gene

    Size:
    955 amino acids
    Molecular mass:
    105790 Da
    Quaternary structure:
    • Interacts heterophilically through its MAM domain with proteins in axon-rich regions and through its Ig-like domains with proteins in differentiating muscle (By similarity). Interacts (through the Ig-like domains) with NLGN2.
    SequenceCaution:
    • Sequence=BAC03502.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for MDGA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MDGA1 Gene

Post-translational modifications for MDGA1 Gene

  • Glycosylation at Asn42, Asn90, Asn235, posLast=247247, posLast=257257, Asn307, posLast=331331, posLast=432432, posLast=655655, Asn747, and posLast=826826
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for MDGA1 Gene

Domains & Families for MDGA1 Gene

Gene Families for MDGA1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted secreted proteins

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MDGA1: view

No data available for UniProtKB/Swiss-Prot for MDGA1 Gene

Function for MDGA1 Gene

Molecular function for MDGA1 Gene

UniProtKB/Swiss-Prot Function:
Required for radial migration of cortical neurons in the superficial layer of the neocortex (By similarity). Plays a role in the formation or maintenance of inhibitory synapses. May function by inhibiting the activity of NLGN2.

Phenotypes From GWAS Catalog for MDGA1 Gene

Gene Ontology (GO) - Molecular Function for MDGA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with MDGA1: view
genes like me logo Genes that share phenotypes with MDGA1: view

Animal Models for MDGA1 Gene

MGI Knock Outs for MDGA1:

Animal Model Products

  • Taconic Biosciences Mouse Models for MDGA1

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for MDGA1
  • Applied Biological Materials Clones for MDGA1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MDGA1 Gene

Localization for MDGA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MDGA1 Gene

Cell membrane; Lipid-anchor, GPI-anchor. Note=Associated with lipid rafts.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MDGA1 gene
Compartment Confidence
plasma membrane 5
extracellular 5
golgi apparatus 2
peroxisome 1
nucleus 1
cytosol 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (3)
  • Plasma membrane (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for MDGA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IDA 22664934
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0031225 anchored component of membrane IEA --
genes like me logo Genes that share ontologies with MDGA1: view

Pathways & Interactions for MDGA1 Gene

genes like me logo Genes that share pathways with MDGA1: view

Interacting Proteins for MDGA1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000402584%0d%0a9606.ENSP00000317980%0d%0a
Selected Interacting proteins: Q8NFP4-MDGA1_HUMAN ENSP00000402584 for MDGA1 Gene via IID STRING

Gene Ontology (GO) - Biological Process for MDGA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001764 neuron migration ISS --
GO:0006501 C-terminal protein lipidation TAS --
GO:0007275 multicellular organism development IEA --
GO:0007399 nervous system development IEA --
GO:0007420 brain development ISS 15019943
genes like me logo Genes that share ontologies with MDGA1: view

No data available for SIGNOR curated interactions for MDGA1 Gene

Drugs & Compounds for MDGA1 Gene

No Compound Related Data Available

Transcripts for MDGA1 Gene

Unigene Clusters for MDGA1 Gene

MAM domain containing glycosylphosphatidylinositol anchor 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for MDGA1
  • Applied Biological Materials Clones for MDGA1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MDGA1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b · 13c ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18a ·
SP1:
SP2: - -
SP3: -
SP4:
SP5:
SP6: - -
SP7: -
SP8: -
SP9:
SP10:
SP11: -
SP12: -

ExUns: 18b · 18c ^ 19 ^ 20a · 20b · 20c
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for MDGA1 Gene

GeneLoc Exon Structure for
MDGA1
ECgene alternative splicing isoforms for
MDGA1

Expression for MDGA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MDGA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MDGA1 Gene

This gene is overexpressed in Brain - Cerebellum (x19.2) and Brain - Cerebellar Hemisphere (x16.8).

Protein differential expression in normal tissues from HIPED for MDGA1 Gene

This gene is overexpressed in Fetal Brain (56.4) and Retina (10.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MDGA1 Gene



Protein tissue co-expression partners for MDGA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MDGA1 Gene:

MDGA1

SOURCE GeneReport for Unigene cluster for MDGA1 Gene:

Hs.437993

mRNA Expression by UniProt/SwissProt for MDGA1 Gene:

Q8NFP4-MDGA1_HUMAN
Tissue specificity: Has been found in brain, heart, skeletal muscle and kidney. Found to be overexpressed in tumor tissues.

Evidence on tissue expression from TISSUES for MDGA1 Gene

  • Adrenal gland(5)
  • Nervous system(4.8)
  • Bone marrow(4)
genes like me logo Genes that share expression patterns with MDGA1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for MDGA1 Gene

Orthologs for MDGA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MDGA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MDGA1 33 34
  • 99.72 (n)
dog
(Canis familiaris)
Mammalia MDGA1 33 34
  • 92.42 (n)
cow
(Bos Taurus)
Mammalia MDGA1 33 34
  • 92.36 (n)
mouse
(Mus musculus)
Mammalia Mdga1 33 16 34
  • 89.83 (n)
rat
(Rattus norvegicus)
Mammalia Mdga1 33
  • 89.38 (n)
oppossum
(Monodelphis domestica)
Mammalia MDGA1 34
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MDGA1 34
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves MDGA1 33 34
  • 74.53 (n)
lizard
(Anolis carolinensis)
Reptilia MDGA1 34
  • 76 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.13549 33
zebrafish
(Danio rerio)
Actinopterygii LOC569180 33
  • 65.07 (n)
MDGA1 34
  • 61 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 33 (a)
OneToMany
Species where no ortholog for MDGA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MDGA1 Gene

ENSEMBL:
Gene Tree for MDGA1 (if available)
TreeFam:
Gene Tree for MDGA1 (if available)

Paralogs for MDGA1 Gene

Paralogs for MDGA1 Gene

(8) SIMAP similar genes for MDGA1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with MDGA1: view

Variants for MDGA1 Gene

Sequence variations from dbSNP and Humsavar for MDGA1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs864309493 Uncertain significance 37,638,307(-) TTATT(G/T)TTGAG nc-transcript-variant, downstream-variant-500B, reference, missense
rs864309630 Uncertain significance 37,644,563(-) ATGCC(C/T)TCACC nc-transcript-variant, reference, missense
rs1000009917 -- 37,686,639(+) CCAGG(C/T)TGGTC intron-variant
rs1000022709 -- 37,652,774(+) GACCC(C/G)TACAA intron-variant
rs1000038336 -- 37,679,748(+) CATGG(C/T)TTCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MDGA1 Gene

Variant ID Type Subtype PubMed ID
esv2667581 CNV deletion 23128226
esv2731934 CNV deletion 23290073
esv2752124 CNV gain 17911159
esv27953 CNV loss 19812545
nsv1015689 CNV gain 25217958
nsv958351 CNV deletion 24416366

Variation tolerance for MDGA1 Gene

Residual Variation Intolerance Score: 18.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.35; 76.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MDGA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MDGA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MDGA1 Gene

Disorders for MDGA1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MDGA1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
schizophrenia
  • schizophrenia 12
- elite association - COSMIC cancer census association via MalaCards
Search MDGA1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for MDGA1

Genetic Association Database (GAD)
MDGA1
Human Genome Epidemiology (HuGE) Navigator
MDGA1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MDGA1
genes like me logo Genes that share disorders with MDGA1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MDGA1 Gene

Publications for MDGA1 Gene

  1. Characterization of MDGA1, a novel human glycosylphosphatidylinositol-anchored protein localized in lipid rafts. (PMID: 15922729) Díaz-López A … De Juan C (Experimental cell research 2005) 2 3 4 60
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  3. WITHDRAWN: Common polymorphisms in the MDGA1 gene are associated with bipolar disorder and schizophrenia in the Chinese Han population. (PMID: 20036297) Li J … Shi Y (Progress in neuro-psychopharmacology & biological psychiatry 2009) 3 45 60
  4. Association analysis of schizophrenia on 18 genes involved in neuronal migration: MDGA1 as a new susceptibility gene. (PMID: 18384059) Kähler AK … Andreassen OA (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2008) 3 45 60
  5. Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PMID: 16335952) Liu T … Smith RD (Journal of proteome research 2005) 3 4 60

Products for MDGA1 Gene

  • Addgene plasmids for MDGA1

Sources for MDGA1 Gene

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