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Aliases for MDC1-AS1 Gene

Subcategory (RNA class) for MDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MDC1-AS1 Gene

  • MDC1 Antisense RNA 1 2 3 5
  • MDC1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG27H4.7 3
  • MDC1-AS 3

External Ids for MDC1-AS1 Gene

Previous GeneCards Identifiers for MDC1-AS1 Gene

  • GC00U933522
  • GC06P030673
  • GC06P030704
  • GC06P030842
  • GC06P030830
  • GC06P030905
  • GC06P031064

Summaries for MDC1-AS1 Gene

GeneCards Summary for MDC1-AS1 Gene

MDC1-AS1 (MDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MDC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MDC1-AS1 Gene

Genomics for MDC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for MDC1-AS1 Gene

Promoters and enhancers for MDC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I030739 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.8 +39.8 39839 6.5 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 FLOT1 HCG20 IER3-AS1 IER3 DDX39B DHX16 PPP1R10 RPL3P2 LY6G5B NRM
GH06I030730 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 +28.0 28002 1 HDGF ARID4B SIN3A ZNF2 IRF4 ZNF48 ZNF121 E2F8 ARID2 ZNF143 DHX16 C6orf136 MDC1-AS1 HLA-C PPP1R18 FLOT1 ENSG00000201988 GC06M030736 PIR41687
GH06I030735 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.2 +34.0 34043 2.9 HDGF HDAC1 PKNOX1 SMAD1 RB1 BMI1 BATF IRF4 GATA2 ZNF366 ENSG00000201988 GC06M030736 PTMAP1 ATAT1 MRPS18B PPP1R10 PSORS1C2 MDC1-AS1 C6orf136 DHX16
GH06I030597 Enhancer 0.9 ENCODE 11.1 -105.6 -105558 0.2 HDGF ATF1 ARNT ZNF2 SLC30A9 POLR2B E2F8 ZNF207 ZNF143 NCOA1 PPP1R10 ATAT1 PTMAP1 GNL1 PRR3 C6orf136 MDC1-AS1 MDC1 ABCF1 PIR62319
GH06I030601 Enhancer 0.7 ENCODE dbSUPER 11.1 -101.5 -101459 0.9 PAF1 POLR2B SMAD5 POLR2A MYNN ZNF600 ATAT1 PTMAP1 PRR3 GNL1 C6orf136 MDC1-AS1 MDC1 IFITM4P PIR62319 PPP1R10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MDC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MDC1-AS1 Gene

Genomic Locations for MDC1-AS1 Gene
chr6:30,703,067-30,713,184
(GRCh38/hg38)
Size:
10,118 bases
Orientation:
Plus strand

Genomic View for MDC1-AS1 Gene

Genes around MDC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MDC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for MDC1-AS1 Gene

Post-translational modifications for MDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MDC1-AS1 Gene

Domains & Families for MDC1-AS1 Gene

Gene Families for MDC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MDC1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MDC1-AS1 Gene

Function for MDC1-AS1 Gene

Phenotypes From GWAS Catalog for MDC1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MDC1-AS1 Gene

Localization for MDC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MDC1-AS1 Gene

Pathways & Interactions for MDC1-AS1 Gene

SuperPathways for MDC1-AS1 Gene

No Data Available

Interacting Proteins for MDC1-AS1 Gene

Gene Ontology (GO) - Biological Process for MDC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MDC1-AS1 Gene

Drugs & Compounds for MDC1-AS1 Gene

No Compound Related Data Available

Transcripts for MDC1-AS1 Gene

mRNA/cDNA for MDC1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MDC1-AS1 Gene

No ASD Table

Relevant External Links for MDC1-AS1 Gene

GeneLoc Exon Structure for
MDC1-AS1
ECgene alternative splicing isoforms for
MDC1-AS1

Expression for MDC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MDC1-AS1 Gene

genes like me logo Genes that share expression patterns with MDC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MDC1-AS1 Gene

Orthologs for MDC1-AS1 Gene

Evolution for MDC1-AS1 Gene

ENSEMBL:
Gene Tree for MDC1-AS1 (if available)
TreeFam:
Gene Tree for MDC1-AS1 (if available)

No data available for Orthologs for MDC1-AS1 Gene

Paralogs for MDC1-AS1 Gene

No data available for Paralogs for MDC1-AS1 Gene

Variants for MDC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MDC1-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000262648 -- 30,704,777(+) G/C intron_variant
rs1000265611 -- 30,704,572(+) G/T intron_variant
rs1000854870 -- 30,710,678(+) T/C intron_variant
rs1001089492 -- 30,710,346(+) C/T intron_variant
rs1001121983 -- 30,710,080(+) T/C intron_variant

Additional Variant Information for MDC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MDC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MDC1-AS1 Gene

Disorders for MDC1-AS1 Gene

Additional Disease Information for MDC1-AS1

No disorders were found for MDC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MDC1-AS1 Gene

Publications for MDC1-AS1 Gene

  1. MDC1-AS, an antisense long noncoding RNA, regulates cell proliferation of glioma. (PMID: 27261595) Yue H … Xu Q (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2016) 2 3 58
  2. A novel antisense long noncoding RNA regulates the expression of MDC1 in bladder cancer. (PMID: 25514464) Xue Y … Wang M (Oncotarget 2015) 2 3 58

Products for MDC1-AS1 Gene

Sources for MDC1-AS1 Gene

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