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Aliases for MDC1-AS1 Gene

Subcategory (RNA class) for MDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MDC1-AS1 Gene

  • MDC1 Antisense RNA 1 2 3 5
  • MDC1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG27H4.7 3
  • MDC1-AS 3

External Ids for MDC1-AS1 Gene

Previous GeneCards Identifiers for MDC1-AS1 Gene

  • GC00U933522
  • GC06P030673
  • GC06P030704
  • GC06P030842
  • GC06P030830
  • GC06P030905

Summaries for MDC1-AS1 Gene

GeneCards Summary for MDC1-AS1 Gene

MDC1-AS1 (MDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MDC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MDC1-AS1 Gene

Genomics for MDC1-AS1 Gene

Regulatory Elements for MDC1-AS1 Gene

Enhancers for MDC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H030730 1.5 Ensembl ENCODE dbSUPER 11.4 +28.0 28002 1 HDGF ARID4B SIN3A ZNF2 ZNF121 ZNF143 FOS JUNB REST ZNF592 DHX16 C6orf136 MDC1-AS1 HLA-C PPP1R18 FLOT1 GC06M030736 PIR41687 ENSG00000201988
GH06H030735 1.4 Ensembl ENCODE dbSUPER 11.2 +34.0 34043 2 HDAC1 HDGF PKNOX1 RB1 BMI1 BATF RFX5 GATA2 ZNF366 ZNF143 PTMAP1 ATAT1 MRPS18B PPP1R10 PSORS1C2 MDC1-AS1 C6orf136 DHX16 VARS2 TRIM31
GH06H030739 1.4 ENCODE dbSUPER 10.8 +39.8 39839 6 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 LY6G5B MDC1 DDX39B DHX16 PPP1R10 RPL3P2 RPL7P4 NRM ZNRD1 TRIM26
GH06H030597 0.9 ENCODE 11 -105.6 -105559 0 YBX3 HDGF ATF1 RB1 ARNT ZNF2 RAD21 RFX5 SLC30A9 EGR1 PPP1R10 ATAT1 PTMAP1 GNL1 PRR3 C6orf136 MDC1-AS1 MDC1 ABCF1 PIR62319
GH06H030601 0.8 ENCODE dbSUPER 11.1 -101.5 -101459 0 PAF1 POLR2A SMAD5 MYNN ZNF600 ATAT1 PTMAP1 PRR3 GNL1 C6orf136 MDC1-AS1 MDC1 IFITM4P PIR62319 MRPS18B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MDC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MDC1-AS1 Gene

Chromosome:
6
Start:
30,703,067 bp from pter
End:
30,713,184 bp from pter
Size:
10,118 bases
Orientation:
Plus strand

Genomic View for MDC1-AS1 Gene

Genes around MDC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MDC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for MDC1-AS1 Gene

Post-translational modifications for MDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MDC1-AS1 Gene

Domains & Families for MDC1-AS1 Gene

Gene Families for MDC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MDC1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MDC1-AS1 Gene

Function for MDC1-AS1 Gene

Phenotypes From GWAS Catalog for MDC1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MDC1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MDC1-AS1 Gene

Localization for MDC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MDC1-AS1 Gene

Pathways & Interactions for MDC1-AS1 Gene

SuperPathways for MDC1-AS1 Gene

No Data Available

Interacting Proteins for MDC1-AS1 Gene

Gene Ontology (GO) - Biological Process for MDC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MDC1-AS1 Gene

Drugs & Compounds for MDC1-AS1 Gene

No Compound Related Data Available

Transcripts for MDC1-AS1 Gene

mRNA/cDNA for MDC1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MDC1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MDC1-AS1 Gene

No ASD Table

Relevant External Links for MDC1-AS1 Gene

GeneLoc Exon Structure for
MDC1-AS1
ECgene alternative splicing isoforms for
MDC1-AS1

Expression for MDC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MDC1-AS1 Gene

genes like me logo Genes that share expression patterns with MDC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MDC1-AS1 Gene

Orthologs for MDC1-AS1 Gene

Evolution for MDC1-AS1 Gene

ENSEMBL:
Gene Tree for MDC1-AS1 (if available)
TreeFam:
Gene Tree for MDC1-AS1 (if available)

No data available for Orthologs for MDC1-AS1 Gene

Paralogs for MDC1-AS1 Gene

No data available for Paralogs for MDC1-AS1 Gene

Variants for MDC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MDC1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000262648 -- 30,704,777(+) ACGTA(C/G)GCTCA intron-variant, reference, missense
rs1000265611 -- 30,704,572(+) GGCTG(G/T)AGCTC intron-variant, reference, synonymous-codon
rs1000854870 -- 30,710,678(+) AGGTG(C/T)GAGCC intron-variant
rs1001089492 -- 30,710,346(+) GGCTT(C/T)CCAAA intron-variant
rs1001121983 -- 30,710,080(+) CTATA(C/T)ACACA intron-variant

Relevant External Links for MDC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MDC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MDC1-AS1 Gene

Disorders for MDC1-AS1 Gene

Relevant External Links for MDC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MDC1-AS1

No disorders were found for MDC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MDC1-AS1 Gene

Publications for MDC1-AS1 Gene

  1. MDC1-AS, an antisense long noncoding RNA, regulates cell proliferation of glioma. (PMID: 27261595) Yue H … Xu Q (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2016) 2 3 60
  2. A novel antisense long noncoding RNA regulates the expression of MDC1 in bladder cancer. (PMID: 25514464) Xue Y … Wang M (Oncotarget 2015) 2 3 60

Products for MDC1-AS1 Gene

Sources for MDC1-AS1 Gene

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