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Aliases for MDC1-AS1 Gene

Subcategory (RNA class) for MDC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MDC1-AS1 Gene

  • MDC1 Antisense RNA 1 2 3 5
  • MDC1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG27H4.7 3
  • MDC1-AS 3

External Ids for MDC1-AS1 Gene

Previous GeneCards Identifiers for MDC1-AS1 Gene

  • GC00U933522
  • GC06P030673
  • GC06P030704
  • GC06P030842

Summaries for MDC1-AS1 Gene

GeneCards Summary for MDC1-AS1 Gene

MDC1-AS1 (MDC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MDC1-AS1 Gene

Genomics for MDC1-AS1 Gene

Regulatory Elements for MDC1-AS1 Gene

Enhancers for MDC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030730 1.4 Ensembl ENCODE 11.3 +28.0 28002 1.1 HDGF ARID4B SIN3A ZNF48 ZNF2 ZNF121 ZNF143 JUNB REST ZNF610 DHX16 C6orf136 MDC1-AS1 HLA-C PPP1R18 FLOT1 GC06M030736 ENSG00000201988 PIR41687
GH06F030735 1 Ensembl ENCODE 11.1 +34.0 34043 2.9 HDGF TBP PKNOX1 WRNIP1 BMI1 ZBTB40 ZNF366 GATA2 ELK1 ZNF143 PTMAP1 ATAT1 MRPS18B PPP1R10 PSORS1C2 MDC1-AS1 C6orf136 DHX16 VARS2 TRIM31
GH06F030601 0.7 ENCODE 11 -101.5 -101459 0.9 PAF1 SMAD5 POLR2A ZNF600 ATAT1 PTMAP1 GNL1 PRR3 C6orf136 MDC1-AS1 MDC1 IFITM4P PIR62319 MRPS18B
GH06F030597 0.2 ENCODE 11 -105.6 -105559 0.2 YBX3 ARNT ZNF2 RAD21 RFX5 SLC30A9 EGR1 ZNF143 CREM EGR2 PPP1R10 ATAT1 PTMAP1 GNL1 PRR3 C6orf136 MDC1-AS1 MDC1 ABCF1 PIR62319
GH06F030739 1.1 ENCODE 10.8 +39.8 39839 6.5 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MEF2D RPL7P4 DHX16 TMPOP1 UBQLN1P1 SNORA38 ENSG00000233902 HLA-P PPP1R10 GNL1 RPL3P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MDC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MDC1-AS1 Gene

Chromosome:
6
Start:
30,703,067 bp from pter
End:
30,713,184 bp from pter
Size:
10,118 bases
Orientation:
Plus strand

Genomic View for MDC1-AS1 Gene

Genes around MDC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MDC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MDC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for MDC1-AS1 Gene

Post-translational modifications for MDC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MDC1-AS1 Gene

Domains & Families for MDC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MDC1-AS1 Gene

Function for MDC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MDC1-AS1 Gene

Localization for MDC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MDC1-AS1 Gene

Pathways & Interactions for MDC1-AS1 Gene

SuperPathways for MDC1-AS1 Gene

No Data Available

Interacting Proteins for MDC1-AS1 Gene

Gene Ontology (GO) - Biological Process for MDC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MDC1-AS1 Gene

Transcripts for MDC1-AS1 Gene

mRNA/cDNA for MDC1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MDC1-AS1 Gene

No ASD Table

Relevant External Links for MDC1-AS1 Gene

GeneLoc Exon Structure for
MDC1-AS1
ECgene alternative splicing isoforms for
MDC1-AS1

Expression for MDC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MDC1-AS1 Gene

genes like me logo Genes that share expression patterns with MDC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MDC1-AS1 Gene

Orthologs for MDC1-AS1 Gene

Evolution for MDC1-AS1 Gene

ENSEMBL:
Gene Tree for MDC1-AS1 (if available)
TreeFam:
Gene Tree for MDC1-AS1 (if available)

No data available for Orthologs for MDC1-AS1 Gene

Paralogs for MDC1-AS1 Gene

No data available for Paralogs for MDC1-AS1 Gene

Variants for MDC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MDC1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10947087 -- 30,704,686(+) GAGGC(A/G)GAAGC intron-variant, reference, synonymous-codon
rs111522696 -- 30,706,723(+) ACCCG(G/T)GAGGC intron-variant
rs111863413 -- 30,706,220(+) GGTGG(C/G)TCACG intron-variant
rs112173261 -- 30,708,869(+) AAAAA(A/C)AAAAA intron-variant
rs112858927 -- 30,706,717(+) GCTTG(A/G)ACCCG intron-variant

Relevant External Links for MDC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MDC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MDC1-AS1 Gene

Disorders for MDC1-AS1 Gene

Relevant External Links for MDC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MDC1-AS1

No disorders were found for MDC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MDC1-AS1 Gene

Publications for MDC1-AS1 Gene

  1. A novel antisense long noncoding RNA regulates the expression of MDC1 in bladder cancer. (PMID: 25514464) Xue Y. … Wang M. (Oncotarget 2015) 2 3 64

Products for MDC1-AS1 Gene

Sources for MDC1-AS1 Gene

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