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Aliases for MCTS2P Gene

Aliases for MCTS2P Gene

  • Malignant T-Cell Amplified Sequence 2, Pseudogene 2 3 5
  • Malignant T Cell Amplified Sequence 2, Pseudogene 2
  • Malignant T Cell Amplified Sequence 1 Pseudogene 3
  • PSIMCT-1 3
  • MCTS2 3

External Ids for MCTS2P Gene

Previous GeneCards Identifiers for MCTS2P Gene

  • GC20P030137

Summaries for MCTS2P Gene

Entrez Gene Summary for MCTS2P Gene

  • This locus represents a retrogene copy of MCTS1 (GeneID:28985) and contains an ORF similar to that parent gene. This retrogene might not be transcribed independently of the overlapping HM13 gene (GeneID:81502), and therefore, this locus is currently represented as a pseudogene. This locus is situated in a differentially methylated region (DMR) and transcripts in this region are imprinted. [provided by RefSeq, Nov 2015]

GeneCards Summary for MCTS2P Gene

MCTS2P (Malignant T-Cell Amplified Sequence 2, Pseudogene) is a Pseudogene.

Additional gene information for MCTS2P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCTS2P Gene

Genomics for MCTS2P Gene

Regulatory Elements for MCTS2P Gene

Enhancers for MCTS2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H031894 1.5 FANTOM5 Ensembl ENCODE 22.5 +348.0 347952 1.5 HDGF ATF1 ZNF493 ZFP64 ZNF133 RFX5 ZNF302 ZNF354C ZNF143 ATF7 ASXL1 TM9SF4 MCTS2P DNMT3B REM1 TSPY26P BAK1P1 RSL24D1P6 PDRG1 C20orf203
GH20H031590 2 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +47.5 47467 8.5 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 TM9SF4 HM13 ASXL1 PLAGL2 MCTS2P COX4I2 ID1 LOC105372588 RNU6-384P
GH20H031565 1.7 Ensembl ENCODE dbSUPER 12.1 +22.8 22808 9.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D ASXL1 TM9SF4 HM13 COX4I2 ID1 MCTS2P MYLK2 HM13-AS1 PIR57123 HM13-IT1
GH20H031709 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +169.8 169807 14.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 TM9SF4 ASXL1 PLAGL2 MYLK2 COX4I2 DEFB121 RNU1-94P DEFB122 DEFB123 DEFB118
GH20H032324 1.3 Ensembl ENCODE 11.3 +779.1 779105 3.2 PKNOX1 FOXA2 MLX ARNT ARID4B DMAP1 TCF12 SLC30A9 GTF3C2 FOS TM9SF4 ASXL1 BAK1P1 PLAGL2 MCTS2P NOL4L TSPY26P GC20P032332 GC20P032313 PIR40791
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MCTS2P on UCSC Golden Path with GeneCards custom track

Promoters for MCTS2P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000135996 118 1801 PKNOX1 FOXA2 ATF1 MLX ZFP64 ARID4B SIN3A DMAP1 BRCA1 YY1

Genomic Locations for MCTS2P Gene

Genomic Locations for MCTS2P Gene
chr20:31,547,382-31,548,220
(GRCh38/hg38)
Size:
839 bases
Orientation:
Plus strand
chr20:30,135,185-30,136,023
(GRCh37/hg19)

Genomic View for MCTS2P Gene

Genes around MCTS2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCTS2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCTS2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCTS2P Gene

Proteins for MCTS2P Gene

Post-translational modifications for MCTS2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MCTS2P Gene

Domains & Families for MCTS2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MCTS2P Gene

Function for MCTS2P Gene

Phenotypes From GWAS Catalog for MCTS2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MCTS2P Gene

Localization for MCTS2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MCTS2P Gene

Pathways & Interactions for MCTS2P Gene

SuperPathways for MCTS2P Gene

No Data Available

Interacting Proteins for MCTS2P Gene

Gene Ontology (GO) - Biological Process for MCTS2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MCTS2P Gene

Drugs & Compounds for MCTS2P Gene

No Compound Related Data Available

Transcripts for MCTS2P Gene

mRNA/cDNA for MCTS2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MCTS2P Gene

No ASD Table

Relevant External Links for MCTS2P Gene

GeneLoc Exon Structure for
MCTS2P
ECgene alternative splicing isoforms for
MCTS2P

Expression for MCTS2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MCTS2P Gene

NURSA nuclear receptor signaling pathways regulating expression of MCTS2P Gene:

MCTS2P
genes like me logo Genes that share expression patterns with MCTS2P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MCTS2P Gene

Orthologs for MCTS2P Gene

Evolution for MCTS2P Gene

ENSEMBL:
Gene Tree for MCTS2P (if available)
TreeFam:
Gene Tree for MCTS2P (if available)

No data available for Orthologs for MCTS2P Gene

Paralogs for MCTS2P Gene

No data available for Paralogs for MCTS2P Gene

Variants for MCTS2P Gene

Structural Variations from Database of Genomic Variants (DGV) for MCTS2P Gene

Variant ID Type Subtype PubMed ID
nsv585911 CNV gain 21841781
nsv470546 CNV gain 18288195
nsv458961 CNV gain 19166990
esv3645653 CNV gain 21293372
esv3645652 CNV gain 21293372
esv2763228 CNV gain 21179565
dgv4300n100 CNV gain 25217958

Relevant External Links for MCTS2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MCTS2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for MCTS2P Gene

Disorders for MCTS2P Gene

Relevant External Links for MCTS2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MCTS2P

No disorders were found for MCTS2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCTS2P Gene

Publications for MCTS2P Gene

  1. Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment. (PMID: 24402520) Court F … Monk D (Genome research 2014) 2 3 60
  2. Characterization of the MCT-1 pseudogene: identification and implication of its location in a highly amplified region of chromosome 20. (PMID: 16815567) Nandi S … Gartenhaus RB (Biochimica et biophysica acta 2006) 2 3 60
  3. Array-based DNA methylation analysis in individuals with developmental delay/intellectual disability and normal molecular karyotype. (PMID: 26003415) Kolarova J … Caliebe A (European journal of medical genetics 2015) 3 60
  4. A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation. (PMID: 17291163) Wood AJ … Oakey RJ (PLoS genetics 2007) 3 60

Products for MCTS2P Gene

Sources for MCTS2P Gene

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