Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MCTS2P Gene

Aliases for MCTS2P Gene

  • Malignant T Cell Amplified Sequence 2, Pseudogene 2 3
  • Malignant T-Cell Amplified Sequence 2, Pseudogene 5
  • Malignant T Cell Amplified Sequence 1 Pseudogene 3
  • PSIMCT-1 3
  • MCTS2 3

External Ids for MCTS2P Gene

Previous GeneCards Identifiers for MCTS2P Gene

  • GC20P030137

Summaries for MCTS2P Gene

Entrez Gene Summary for MCTS2P Gene

  • This locus represents a retrogene copy of MCTS1 (GeneID:28985) and contains an ORF similar to that parent gene. This retrogene might not be transcribed independently of the overlapping HM13 gene (GeneID:81502), and therefore, this locus is currently represented as a pseudogene. This locus is situated in a differentially methylated region (DMR) and transcripts in this region are imprinted. [provided by RefSeq, Nov 2015]

GeneCards Summary for MCTS2P Gene

MCTS2P (Malignant T Cell Amplified Sequence 2, Pseudogene) is a Pseudogene.

Additional gene information for MCTS2P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCTS2P Gene

Genomics for MCTS2P Gene

GeneHancer (GH) Regulatory Elements for MCTS2P Gene

Promoters and enhancers for MCTS2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I031894 Enhancer 1.3 FANTOM5 Ensembl ENCODE 31.2 +348.0 347951 1.5 HDGF ATF1 SMAD1 ZNF493 ZFP64 ZNF133 RFX5 ZNF335 ZNF213 ZNF302 ASXL1 TM9SF4 MCTS2P BAK1P1 DNMT3B REM1 TSPY26P RSL24D1P6 PDRG1 C20orf203
GH20I031709 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +169.8 169806 14.7 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 BCL2L1 ASXL1 PLAGL2 TM9SF4 MYLK2 COX4I2 TSPY26P LOC105372589 ID1 MCTS2P
GH20I031565 Promoter/Enhancer 2 Ensembl ENCODE dbSUPER 12.1 +22.8 22808 9.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 PIR57123 ASXL1 TM9SF4 HM13 COX4I2 ID1 MCTS2P PLAGL2 MYLK2 HM13-AS1
GH20I032354 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10 +810.3 810311 7.3 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ASXL1 TSPY26P ENSG00000236772 TM9SF4 MCTS2P C20orf203 NOL4L ENSG00000277692
GH20I031590 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +47.5 47467 8.5 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ZFP64 ARID4B NEUROD1 SIN3A HM13 ASXL1 TM9SF4 MCTS2P COX4I2 ID1 RNU6-384P LOC105372588
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MCTS2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for MCTS2P Gene

Genomic Locations for MCTS2P Gene
chr20:31,547,382-31,548,220
(GRCh38/hg38)
Size:
839 bases
Orientation:
Plus strand
chr20:30,135,185-30,136,023
(GRCh37/hg19)

Genomic View for MCTS2P Gene

Genes around MCTS2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCTS2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCTS2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCTS2P Gene

Proteins for MCTS2P Gene

Post-translational modifications for MCTS2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MCTS2P Gene

Domains & Families for MCTS2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MCTS2P Gene

Function for MCTS2P Gene

Phenotypes From GWAS Catalog for MCTS2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MCTS2P Gene

Localization for MCTS2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MCTS2P Gene

Pathways & Interactions for MCTS2P Gene

SuperPathways for MCTS2P Gene

No Data Available

Interacting Proteins for MCTS2P Gene

Gene Ontology (GO) - Biological Process for MCTS2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MCTS2P Gene

Drugs & Compounds for MCTS2P Gene

No Compound Related Data Available

Transcripts for MCTS2P Gene

mRNA/cDNA for MCTS2P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MCTS2P Gene

No ASD Table

Relevant External Links for MCTS2P Gene

GeneLoc Exon Structure for
MCTS2P
ECgene alternative splicing isoforms for
MCTS2P

Expression for MCTS2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MCTS2P Gene

NURSA nuclear receptor signaling pathways regulating expression of MCTS2P Gene:

MCTS2P
genes like me logo Genes that share expression patterns with MCTS2P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MCTS2P Gene

Orthologs for MCTS2P Gene

Evolution for MCTS2P Gene

ENSEMBL:
Gene Tree for MCTS2P (if available)
TreeFam:
Gene Tree for MCTS2P (if available)

No data available for Orthologs for MCTS2P Gene

Paralogs for MCTS2P Gene

No data available for Paralogs for MCTS2P Gene

Variants for MCTS2P Gene

Structural Variations from Database of Genomic Variants (DGV) for MCTS2P Gene

Variant ID Type Subtype PubMed ID
dgv4300n100 CNV gain 25217958
esv2763228 CNV gain 21179565
esv3645652 CNV gain 21293372
esv3645653 CNV gain 21293372
nsv458961 CNV gain 19166990
nsv470546 CNV gain 18288195
nsv585911 CNV gain 21841781

Additional Variant Information for MCTS2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MCTS2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for MCTS2P Gene

Disorders for MCTS2P Gene

Additional Disease Information for MCTS2P

No disorders were found for MCTS2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCTS2P Gene

Publications for MCTS2P Gene

  1. Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment. (PMID: 24402520) Court F … Monk D (Genome research 2014) 2 3 58
  2. Characterization of the MCT-1 pseudogene: identification and implication of its location in a highly amplified region of chromosome 20. (PMID: 16815567) Nandi S … Gartenhaus RB (Biochimica et biophysica acta 2006) 2 3 58
  3. Array-based DNA methylation analysis in individuals with developmental delay/intellectual disability and normal molecular karyotype. (PMID: 26003415) Kolarova J … Caliebe A (European journal of medical genetics 2015) 3 58
  4. A screen for retrotransposed imprinted genes reveals an association between X chromosome homology and maternal germ-line methylation. (PMID: 17291163) Wood AJ … Oakey RJ (PLoS genetics 2007) 3 58

Products for MCTS2P Gene

Sources for MCTS2P Gene

Content
Loading form....