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Aliases for MCRIP1 Gene

Aliases for MCRIP1 Gene

  • MAPK Regulated Corepressor Interacting Protein 1 2 3 5
  • Granulin-2 2 3 4
  • Family With Sequence Similarity 195, Member B 2 3
  • Protein FAM195B 3 4
  • FAM195B 3 4
  • GRAN2 3 4
  • MAPK-Regulated Co-Repressor Interacting Protein 1 3
  • Mapk-Regulated Corepressor-Interacting Protein 1 3
  • Family With Sequence Similarity 195 Member B 2
  • MCRIP1 Protein 3
  • MCRIP 3

External Ids for MCRIP1 Gene

Previous HGNC Symbols for MCRIP1 Gene

  • FAM195B

Summaries for MCRIP1 Gene

GeneCards Summary for MCRIP1 Gene

MCRIP1 (MAPK Regulated Corepressor Interacting Protein 1) is a Protein Coding gene. An important paralog of this gene is MCRIP2.

UniProtKB/Swiss-Prot for MCRIP1 Gene

  • The phosphorylation status of MCRIP1 functions as a molecular switch to regulate epithelial-mesenchymal transition. Unphosphorylated MCRIP1 binds to and inhibits the transcriptional corepressor CTBP(s). When phosphorylated by MAPK/ERK, MCRIP1 releases CTBP(s) resulting in transcriptional silencing of the E-cadherin gene and induction of epithelial-mesenchymal transition (PubMed:25728771).

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCRIP1 Gene

Genomics for MCRIP1 Gene

Regulatory Elements for MCRIP1 Gene

Enhancers for MCRIP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G081700 1.4 ENCODE dbSUPER 11.9 +130.5 130512 4.2 HDGF MLX CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ARL16 ENSG00000262049 TSPAN10 GCGR PPP1R27 MCRIP1 ENSG00000262652 CCDC137 NARF-IT1 ARL2BPP9
GH17G081452 1.6 FANTOM5 Ensembl ENCODE 10 +375.2 375200 10.4 AGO1 ZNF493 ZFP64 GLIS2 GATA2 ELK1 FOS ZNF548 ZNF263 ZNF202 ENSG00000262049 OGFOD3 CEP131 ENSG00000262877 TSPAN10 HGS RFNG ENSG00000265678 TEPSIN ENSG00000263731
GH17G081558 1.4 Ensembl ENCODE dbSUPER 11.2 +268.9 268940 11.1 PKNOX1 NFIB ZSCAN4 SIN3A FEZF1 RAD21 ZNF366 FOS RELB EGR2 NPLOC4 TSPAN10 ARL16 OXLD1 FSCN2 ENSG00000229848 PDE6G CCDC137 GCGR MCRIP1
GH17G082313 1.5 Ensembl ENCODE dbSUPER 10 -482.8 -482751 4.7 AGO1 ZNF493 ZFP64 ARID4B DMAP1 ZNF48 SP5 ZHX2 REST PPARG ENSG00000262877 TEX19 ALYREF GPS1 MCRIP1 CSNK1D UTS2R CD7 ENSG00000260563
GH17G081682 1.1 ENCODE 11.7 +149.1 149148 3.5 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 FOS SP3 ARL16 ALYREF CCDC137 PDE6G NPLOC4 TSPAN10 P4HB GCGR MCRIP1 PPP1R27
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MCRIP1 on UCSC Golden Path with GeneCards custom track

Promoters for MCRIP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000099484 202 1401 HDGF MLX CREB3L1 AGO1 ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2

Genomic Location for MCRIP1 Gene

Chromosome:
17
Start:
81,822,361 bp from pter
End:
81,833,302 bp from pter
Size:
10,942 bases
Orientation:
Minus strand

Genomic View for MCRIP1 Gene

Genes around MCRIP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCRIP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCRIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCRIP1 Gene

Proteins for MCRIP1 Gene

  • Protein details for MCRIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JLW8-MCRI1_HUMAN
    Recommended name:
    Mapk-regulated corepressor-interacting protein 1
    Protein Accession:
    C9JLW8
    Secondary Accessions:
    • Q6ZUL0

    Protein attributes for MCRIP1 Gene

    Size:
    97 amino acids
    Molecular mass:
    10920 Da
    Quaternary structure:
    • Interacts (unphosphorylated form, via the PXDLS motif) with CTBP1, competitively inhibiting CTBP-ZEB1 interaction (PubMed:25728771). Interacts with CTBP2 (PubMed:25728771). Interacts with MCRIP2 (PubMed:26184334). Interacts with DDX6 (PubMed:26184334).
    SequenceCaution:
    • Sequence=BAC86211.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

neXtProt entry for MCRIP1 Gene

Post-translational modifications for MCRIP1 Gene

  • Phosphorylation by MAPK3/1 (ERK1/2) regulates MCRIP1 binding to CTBP(s) (PubMed:25728771).
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MCRIP1 Gene

Domains & Families for MCRIP1 Gene

Protein Domains for MCRIP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MCRIP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

C9JLW8

UniProtKB/Swiss-Prot:

MCRI1_HUMAN :
  • Belongs to the MCRIP family.
Family:
  • Belongs to the MCRIP family.
genes like me logo Genes that share domains with MCRIP1: view

No data available for Gene Families for MCRIP1 Gene

Function for MCRIP1 Gene

Molecular function for MCRIP1 Gene

UniProtKB/Swiss-Prot Function:
The phosphorylation status of MCRIP1 functions as a molecular switch to regulate epithelial-mesenchymal transition. Unphosphorylated MCRIP1 binds to and inhibits the transcriptional corepressor CTBP(s). When phosphorylated by MAPK/ERK, MCRIP1 releases CTBP(s) resulting in transcriptional silencing of the E-cadherin gene and induction of epithelial-mesenchymal transition (PubMed:25728771).

Gene Ontology (GO) - Molecular Function for MCRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25728771
genes like me logo Genes that share ontologies with MCRIP1: view
genes like me logo Genes that share phenotypes with MCRIP1: view

Animal Model Products

CRISPR Products

miRNA for MCRIP1 Gene

miRTarBase miRNAs that target MCRIP1

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MCRIP1 Gene

Localization for MCRIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MCRIP1 Gene

Nucleus. Cytoplasm. Note=Upon cellular stress, relocalizes to stress granules (PubMed:26184334). {ECO:0000269 PubMed:26184334}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MCRIP1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for MCRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA,IEA 25728771
GO:0005737 cytoplasm IDA,IEA 26184334
GO:0010494 cytoplasmic stress granule IDA 26184334
genes like me logo Genes that share ontologies with MCRIP1: view

Pathways & Interactions for MCRIP1 Gene

SuperPathways for MCRIP1 Gene

No Data Available

Interacting Proteins for MCRIP1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000409009%0d%0a9606.ENSP00000264018%0d%0a
Selected Interacting proteins: ENSP00000409009 C9JLW8-MCRI1_HUMAN for MCRIP1 Gene via STRING IID

Gene Ontology (GO) - Biological Process for MCRIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010717 regulation of epithelial to mesenchymal transition IDA 25728771
genes like me logo Genes that share ontologies with MCRIP1: view

No data available for Pathways by source and SIGNOR curated interactions for MCRIP1 Gene

Drugs & Compounds for MCRIP1 Gene

No Compound Related Data Available

Transcripts for MCRIP1 Gene

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for MCRIP1 Gene

No ASD Table

Relevant External Links for MCRIP1 Gene

GeneLoc Exon Structure for
MCRIP1
ECgene alternative splicing isoforms for
MCRIP1

Expression for MCRIP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MCRIP1 Gene:

MCRIP1

Evidence on tissue expression from TISSUES for MCRIP1 Gene

  • Intestine(4.3)
  • Liver(4.2)
  • Nervous system(2.4)
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MCRIP1 Gene

Orthologs for MCRIP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MCRIP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM195B 34 35
  • 99.72 (n)
cow
(Bos Taurus)
Mammalia FAM195B 34 35
  • 91.41 (n)
dog
(Canis familiaris)
Mammalia FAM195B 34 35
  • 88.89 (n)
mouse
(Mus musculus)
Mammalia Fam195b 34 16 35
  • 88.66 (n)
rat
(Rattus norvegicus)
Mammalia Fam195b 34
  • 87.29 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM195B 35
  • 37 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM195B 34
  • 81.56 (n)
lizard
(Anolis carolinensis)
Reptilia FAM195B 35
  • 89 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam195b 34
  • 70.1 (n)
Str.12007 34
zebrafish
(Danio rerio)
Actinopterygii fam195b 34 35
  • 63.51 (n)
Species where no ortholog for MCRIP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MCRIP1 Gene

ENSEMBL:
Gene Tree for MCRIP1 (if available)
TreeFam:
Gene Tree for MCRIP1 (if available)

Paralogs for MCRIP1 Gene

Paralogs for MCRIP1 Gene

genes like me logo Genes that share paralogs with MCRIP1: view

Variants for MCRIP1 Gene

Sequence variations from dbSNP and Humsavar for MCRIP1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000001219 -- 81,831,512(+) AGGTG(A/G)AGGCC intron-variant
rs1000269938 -- 81,829,120(+) GAGAA(A/G)CGCCG intron-variant
rs1000404663 -- 81,825,216(+) GACCT(C/G)GTGAC intron-variant
rs1000434018 -- 81,825,395(+) GTCTC(C/T)AGCCT intron-variant
rs1000452669 -- 81,834,405(+) TTGCC(A/G)ACACC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MCRIP1 Gene

Variant ID Type Subtype PubMed ID
esv21913 CNV gain+loss 19812545
esv3641406 CNV loss 21293372
nsv428351 CNV gain 18775914
nsv470620 CNV loss 18288195
nsv952390 CNV deletion 24416366

Variation tolerance for MCRIP1 Gene

Gene Damage Index Score: 0.28; 6.21% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MCRIP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MCRIP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MCRIP1 Gene

Disorders for MCRIP1 Gene

Relevant External Links for MCRIP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MCRIP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MCRIP1

No disorders were found for MCRIP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCRIP1 Gene

Publications for MCRIP1 Gene

  1. Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins. (PMID: 26184334) Bish R. … Vogel C. (Biomolecules 2015) 2 3 4 64
  2. MCRIP1, an ERK substrate, mediates ERK-induced gene silencing during epithelial-mesenchymal transition by regulating the co-repressor CtBP. (PMID: 25728771) Ichikawa K. … Takekawa M. (Mol. Cell 2015) 2 3 4 64
  3. TRIM65 regulates microRNA activity by ubiquitination of TNRC6. (PMID: 24778252) Li S. … Dorf M.E. (Proc. Natl. Acad. Sci. U.S.A. 2014) 3 64
  4. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4 64
  5. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PMID: 21406692) Rigbolt K.T. … Blagoev B. (Sci. Signal. 2011) 4 64

Products for MCRIP1 Gene

Sources for MCRIP1 Gene

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