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Aliases for MCM9 Gene

Aliases for MCM9 Gene

  • Minichromosome Maintenance Complex Component 9 2 3
  • Mini-Chromosome Maintenance Deficient Domain-Containing Protein 1 3 4
  • C6orf61 3 4
  • MCMDC1 3 4
  • Minichromosome Maintenance Deficient Domain Containing 1 2
  • DNA Replication Licensing Factor MCM9 3
  • Chromosome 6 Open Reading Frame 61 2
  • Minichromosome Maintenance 9 4
  • DNA Helicase MCM9 3
  • EC 3.6.4.12 4
  • DJ329L24.1 3
  • DJ329L24.3 3
  • MCMDC1, 6
  • HMCM9 4
  • ODG4 3

External Ids for MCM9 Gene

Previous HGNC Symbols for MCM9 Gene

  • MCMDC1
  • C6orf61

Previous GeneCards Identifiers for MCM9 Gene

  • GC06M119255
  • GC06M119136
  • GC06M116813

Summaries for MCM9 Gene

Entrez Gene Summary for MCM9 Gene

  • The protein encoded by this gene is a member of the mini-chromosome maintenance (MCM) protein family that are essential for the initiation of eukaryotic genome replication. Binding of this protein to chromatin has been shown to be a pre-requisite for recruiting the MCM2-7 helicase to DNA replication origins. This protein also binds, and is a positive regulator of, the chromatin licensing and DNA replication factor 1, CDT1. [provided by RefSeq, Nov 2010]

GeneCards Summary for MCM9 Gene

MCM9 (Minichromosome Maintenance Complex Component 9) is a Protein Coding gene. Diseases associated with MCM9 include ovarian dysgenesis 4. Among its related pathways are Cell cycle. GO annotations related to this gene include helicase activity. An important paralog of this gene is MCM2.

UniProtKB/Swiss-Prot for MCM9 Gene

  • Component of the MCM8-MCM9 complex, a complex involved in homologous recombination repair following DNA interstrand cross-links and plays a key role during gametogenesis. The MCM8-MCM9 complex probably acts as a hexameric helicase downstream of the Fanconi anemia proteins BRCA2 and RAD51 and is required to process aberrant forks into homologous recombination substrates and to orchestrate homologous recombination with resection, fork stabilization and fork restart.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCM9 Gene

Genomics for MCM9 Gene

Regulatory Elements for MCM9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MCM9 Gene

Start:
118,813,442 bp from pter
End:
118,935,162 bp from pter
Size:
121,721 bases
Orientation:
Minus strand

Genomic View for MCM9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MCM9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCM9 Gene

Proteins for MCM9 Gene

  • Protein details for MCM9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NXL9-MCM9_HUMAN
    Recommended name:
    DNA helicase MCM9
    Protein Accession:
    Q9NXL9
    Secondary Accessions:
    • B4DR30
    • B9DI77
    • Q2KHJ0
    • Q8N5S5
    • Q9HCV5

    Protein attributes for MCM9 Gene

    Size:
    1143 amino acids
    Molecular mass:
    127313 Da
    Quaternary structure:
    • Component of the MCM8-MCM9 complex, which forms a hexamer composed of MCM8 and MCM9.
    SequenceCaution:
    • Sequence=BAA90991.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG61142.1; Type=Erroneous termination; Positions=1070; Note=Translated as Lys.; Evidence={ECO:0000305}; Sequence=CAX30832.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for MCM9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MCM9 Gene

Proteomics data for MCM9 Gene at MOPED

Post-translational modifications for MCM9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MCM9 Gene

No data available for DME Specific Peptides for MCM9 Gene

Domains for MCM9 Gene

Protein Domains for MCM9 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NXL9

UniProtKB/Swiss-Prot:

MCM9_HUMAN :
  • Q9NXL9
Domain:
  • Contains 1 MCM domain.
Family:
  • Belongs to the MCM family.
genes like me logo Genes that share domains with MCM9: view

No data available for Gene Families for MCM9 Gene

Function for MCM9 Gene

Molecular function for MCM9 Gene

UniProtKB/Swiss-Prot CatalyticActivity: ATP + H(2)O = ADP + phosphate
UniProtKB/Swiss-Prot Function: Component of the MCM8-MCM9 complex, a complex involved in homologous recombination repair following DNA interstrand cross-links and plays a key role during gametogenesis. The MCM8-MCM9 complex probably acts as a hexameric helicase downstream of the Fanconi anemia proteins BRCA2 and RAD51 and is required to process aberrant forks into homologous recombination substrates and to orchestrate homologous recombination with resection, fork stabilization and fork restart.

Enzyme Numbers (IUBMB) for MCM9 Gene

Gene Ontology (GO) - Molecular Function for MCM9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0004386 helicase activity IEA --
GO:0005515 protein binding --
GO:0005524 ATP binding IEA --
GO:0016851 magnesium chelatase activity --
genes like me logo Genes that share ontologies with MCM9: view
genes like me logo Genes that share phenotypes with MCM9: view

Animal Models for MCM9 Gene

MGI Knock Outs for MCM9:

Animal Model Products

CRISPR Products

miRNA for MCM9 Gene

miRTarBase miRNAs that target MCM9

No data available for Transcription Factor Targeting and HOMER Transcription for MCM9 Gene

Localization for MCM9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MCM9 Gene

Nucleus. Note=Localizes to nuclear foci and colocalizes with RAD51. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MCM9 Gene COMPARTMENTS Subcellular localization image for MCM9 gene
Compartment Confidence
cytosol 2
nucleus 2
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for MCM9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0097362 MCM8-MCM9 complex IDA 22771115
genes like me logo Genes that share ontologies with MCM9: view

Pathways for MCM9 Gene

SuperPathways for MCM9 Gene

Superpath Contained pathways
1 Cell cycle
genes like me logo Genes that share pathways with MCM9: view

Pathways by source for MCM9 Gene

1 BioSystems pathway for MCM9 Gene

Interacting Proteins for MCM9 Gene

Gene Ontology (GO) - Biological Process for MCM9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000724 double-strand break repair via homologous recombination IDA 22771115
GO:0006260 DNA replication IEA --
GO:0006974 cellular response to DNA damage stimulus IDA 22771115
GO:0007276 gamete generation --
GO:0007292 female gamete generation ISS --
genes like me logo Genes that share ontologies with MCM9: view

Transcripts for MCM9 Gene

Unigene Clusters for MCM9 Gene

Minichromosome maintenance complex component 9:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MCM9

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MCM9 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12
SP1: - -
SP2:
SP3:
SP4: -
SP5:

Relevant External Links for MCM9 Gene

GeneLoc Exon Structure for
MCM9
ECgene alternative splicing isoforms for
MCM9

Expression for MCM9 Gene

mRNA expression in normal human tissues for MCM9 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MCM9 Gene

SOURCE GeneReport for Unigene cluster for MCM9 Gene Hs.279008

genes like me logo Genes that share expressions with MCM9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for MCM9 Gene

Orthologs for MCM9 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for MCM9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MCM9 35
  • 99.33 (n)
  • 98.78 (a)
MCM9 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MCM9 35
  • 84.46 (n)
  • 80.47 (a)
MCM9 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MCM9 35
  • 86.12 (n)
  • 81.2 (a)
MCM9 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mcm9 35
  • 79.64 (n)
  • 75.78 (a)
Mcm9 16
Mcm9 36
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MCM9 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 100 (a)
OneToMany
-- 36
  • 51 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Mcm9 35
  • 78.66 (n)
  • 75.07 (a)
chicken
(Gallus gallus)
Aves MCM9 35
  • 64.33 (n)
  • 61.97 (a)
MCM9 36
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MCM9 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mcm9 35
  • 61.32 (n)
  • 59.74 (a)
zebrafish
(Danio rerio)
Actinopterygii mcm9 36
  • 48 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MCM2 36
  • 21 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons MCM9 35
  • 53.88 (n)
  • 51.44 (a)
rice
(Oryza sativa)
Liliopsida Os06g0218500 35
  • 54.84 (n)
  • 52.03 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 45 (a)
OneToOne
Species with no ortholog for MCM9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MCM9 Gene

ENSEMBL:
Gene Tree for MCM9 (if available)
TreeFam:
Gene Tree for MCM9 (if available)

Paralogs for MCM9 Gene

Paralogs for MCM9 Gene

Selected SIMAP similar genes for MCM9 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with MCM9: view

Variants for MCM9 Gene

Sequence variations from dbSNP and Humsavar for MCM9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs65685 -- 118,815,596(+) CCAGC(A/C)TTCTG missense, reference
rs206206 -- 118,824,072(+) tttta(A/G)acaga intron-variant
rs284914 -- 118,814,247(-) TGAGA(A/G)GTATC utr-variant-3-prime
rs284915 -- 118,823,408(+) tcacc(C/T)tctgt intron-variant
rs284918 -- 118,830,009(-) TCCTG(C/T)CCACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MCM9 Gene

Variant ID Type Subtype PubMed ID
nsv830788 CNV Gain 17160897
nsv5453 CNV Insertion 18451855
esv2677245 CNV Deletion 23128226
nsv509151 CNV Insertion 20534489
nsv510910 CNV Complex 20534489
esv2660667 CNV Deletion 23128226
esv2675335 CNV Deletion 23128226
esv2658866 CNV Deletion 23128226
esv29127 CNV Gain 19812545
nsv437523 CNV Loss 16327808

Relevant External Links for MCM9 Gene

HapMap Linkage Disequilibrium report
MCM9
Human Gene Mutation Database (HGMD)
MCM9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MCM9 Gene

Disorders for MCM9 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for MCM9 Gene including...

Search for MCM9 Gene in MalaCards »

UniProtKB/Swiss-Prot

MCM9_HUMAN
  • Ovarian dysgenesis 4 (ODG4) [MIM:616185]: A disorder characterized by lack of spontaneous pubertal development, primary amenorrhea, uterine hypoplasia, and hypergonadotropic hypogonadism as a result of streak gonads. {ECO:0000269 PubMed:25480036}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for MCM9

Human Genome Epidemiology (HuGE) Navigator
MCM9
genes like me logo Genes that share disorders with MCM9: view

Publications for MCM9 Gene

  1. Identification of full genes and proteins of MCM9, a novel, vertebrate-specific member of the MCM2-8 protein family. (PMID: 16226853) Lutzmann M. … Mechali M. (Gene 2005) 2 3 4 23
  2. Identification of a novel cell-cycle-induced MCM family protein MCM9. (PMID: 15850810) Yoshida K. (Biochem. Biophys. Res. Commun. 2005) 2 3 23
  3. Identification, quantification, and evolutionary analysis of a novel isoform of MCM9. (PMID: 23403237) Jeffries E.P. … Trakselis M.A. (Gene 2013) 3 4
  4. Mcm8 and Mcm9 form a complex that functions in homologous recombination repair induced by DNA interstrand crosslinks. (PMID: 22771115) Nishimura K. … Kanemaki M.T. (Mol. Cell 2012) 3 4
  5. MCM9 mutations are associated with ovarian failure, short stature, and chromosomal instability. (PMID: 25480036) Wood-Trageser M.A. … Rajkovic A. (Am. J. Hum. Genet. 2014) 3 4

Products for MCM9 Gene

Sources for MCM9 Gene

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