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Aliases for MCM3AP-AS1 Gene

Subcategory (RNA class) for MCM3AP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for MCM3AP-AS1 Gene

  • MCM3AP Antisense RNA 1 2 3 5
  • MCM3AP Antisense RNA 1 (Non-Protein Coding) 2 3
  • MCM3 Minichromosome Maintenance Deficient 3 (S. Cerevisiae) Associated Protein, Antisense 2
  • Minichromosome Maintenance Complex Component 3 Associated Protein Antisense 3
  • MCM3 Minichromosome Maintenance Deficient 3 Associated Protein Antisense 3
  • MCM3AP Antisense RNA (Non-Protein Coding) 2
  • Non-Protein Coding RNA 31 2
  • NCRNA00031 3
  • MCM3APASB 3
  • MCM3AP-AS 3
  • C21orf85 3
  • MCM3APAS 3

External Ids for MCM3AP-AS1 Gene

Previous HGNC Symbols for MCM3AP-AS1 Gene

  • C21orf85
  • MCM3APAS
  • MCM3AP-AS

Previous GeneCards Identifiers for MCM3AP-AS1 Gene

  • GC21P047650

Summaries for MCM3AP-AS1 Gene

GeneCards Summary for MCM3AP-AS1 Gene

MCM3AP-AS1 (MCM3AP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MCM3AP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCM3AP-AS1 Gene

Genomics for MCM3AP-AS1 Gene

GeneHancer (GH) Regulatory Elements for MCM3AP-AS1 Gene

Promoters and enhancers for MCM3AP-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I046226 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 569.9 -0.8 -823 4.9 HDGF PKNOX1 CLOCK MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B MCM3AP-AS1 LSS MCM3AP YBEY SPATC1L ENSG00000228137 COL6A1 PIR60990
GH21I045589 Enhancer 1.6 FANTOM5 Ensembl ENCODE 119.6 -637.8 -637773 3.5 HDGF PKNOX1 ARNT YBX1 ZNF2 ZBTB7B POLR2B ZNF207 ZNF143 ZNF548 LINC01694 ENSG00000228137 MCM3AP DIP2A MCM3AP-AS1 UBE2G2 POFUT2 COL6A1 ENSG00000215447 ENSG00000227438
GH21I045976 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 65 -247.0 -247038 11.2 HDGF PKNOX1 ATF1 ARNT NEUROD1 SIN3A YBX1 GLI4 ZNF2 ZBTB7B COL6A1 ENSG00000228137 MCM3AP DIP2A MCM3AP-AS1 POFUT2 ENSG00000227438 S100B ENSG00000215447 DSTNP1
GH21I046319 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 51.6 +94.1 94112 6.7 CLOCK DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ZNF610 C21orf58 PCNT ENSG00000228137 MCM3AP ENSG00000227438 MCM3AP-AS1 DIP2A SPATC1L YBEY COL6A1
GH21I046048 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 69.8 -170.7 -170688 19.8 ZNF473 ZSCAN4 INSM2 KLF17 RAD21 ETS1 CBX5 ZNF350 ZNF548 FOS ENSG00000228137 DIP2A MCM3AP MCM3AP-AS1 COL6A1 POFUT2 ENSG00000215447 DSTNP1 LINC00205 ENSG00000227438
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MCM3AP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MCM3AP-AS1 Gene

Genomic Locations for MCM3AP-AS1 Gene
chr21:46,229,217-46,259,390
(GRCh38/hg38)
Size:
30,174 bases
Orientation:
Plus strand
chr21:47,649,131-47,679,304
(GRCh37/hg19)

Genomic View for MCM3AP-AS1 Gene

Genes around MCM3AP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCM3AP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCM3AP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCM3AP-AS1 Gene

Proteins for MCM3AP-AS1 Gene

Post-translational modifications for MCM3AP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MCM3AP-AS1 Gene

Domains & Families for MCM3AP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MCM3AP-AS1 Gene

Function for MCM3AP-AS1 Gene

Phenotypes From GWAS Catalog for MCM3AP-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MCM3AP-AS1 Gene

Localization for MCM3AP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MCM3AP-AS1 Gene

Pathways & Interactions for MCM3AP-AS1 Gene

SuperPathways for MCM3AP-AS1 Gene

No Data Available

Interacting Proteins for MCM3AP-AS1 Gene

Gene Ontology (GO) - Biological Process for MCM3AP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MCM3AP-AS1 Gene

Drugs & Compounds for MCM3AP-AS1 Gene

No Compound Related Data Available

Transcripts for MCM3AP-AS1 Gene

mRNA/cDNA for MCM3AP-AS1 Gene

(7) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MCM3AP-AS1 Gene

MCM3AP antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MCM3AP-AS1 Gene

No ASD Table

Relevant External Links for MCM3AP-AS1 Gene

GeneLoc Exon Structure for
MCM3AP-AS1
ECgene alternative splicing isoforms for
MCM3AP-AS1

Expression for MCM3AP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MCM3AP-AS1 Gene

SOURCE GeneReport for Unigene cluster for MCM3AP-AS1 Gene:

Hs.655095
genes like me logo Genes that share expression patterns with MCM3AP-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MCM3AP-AS1 Gene

Orthologs for MCM3AP-AS1 Gene

Evolution for MCM3AP-AS1 Gene

ENSEMBL:
Gene Tree for MCM3AP-AS1 (if available)
TreeFam:
Gene Tree for MCM3AP-AS1 (if available)

No data available for Orthologs for MCM3AP-AS1 Gene

Paralogs for MCM3AP-AS1 Gene

No data available for Paralogs for MCM3AP-AS1 Gene

Variants for MCM3AP-AS1 Gene

Sequence variations from dbSNP and Humsavar for MCM3AP-AS1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000077044 -- 46,251,249(+) A/G genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000186222 -- 46,251,378(+) T/C genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000235069 -- 46,228,154(+) T/C upstream_transcript_variant
rs1000262928 -- 46,250,853(+) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000300290 -- 46,227,442(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MCM3AP-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7926n54 CNV loss 21841781
dgv7927n54 CNV gain 21841781
dgv7928n54 CNV loss 21841781
esv22993 CNV loss 19812545
esv2393806 CNV deletion 18987734
esv2641041 CNV deletion 19546169
esv3557870 CNV deletion 23714750
esv3647165 CNV loss 21293372
esv8319 CNV loss 19470904
nsv1060978 CNV gain 25217958
nsv1072612 CNV deletion 25765185
nsv1144958 CNV deletion 24896259
nsv3546 CNV insertion 18451855
nsv470910 CNV gain 18288195
nsv509804 CNV insertion 20534489
nsv519904 CNV loss 19592680
nsv587967 CNV loss 21841781
nsv587968 CNV gain+loss 21841781
nsv587975 CNV gain 21841781

Additional Variant Information for MCM3AP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MCM3AP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MCM3AP-AS1 Gene

Disorders for MCM3AP-AS1 Gene

Additional Disease Information for MCM3AP-AS1

No disorders were found for MCM3AP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCM3AP-AS1 Gene

Publications for MCM3AP-AS1 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 58
  2. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A … Wanker EE (Science signaling 2011) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Identification of prognostic biomarkers in glioblastoma using a long non-coding RNA-mediated, competitive endogenous RNA network. (PMID: 27229531) Cao Y … Li X (Oncotarget 2016) 3

Products for MCM3AP-AS1 Gene

Sources for MCM3AP-AS1 Gene

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