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MCIDAS Gene

protein-coding   GIFtS: 27
GCID: GC05M054521

Multiciliate Differentiation And DNA Synthesis Associated...

(Previous name: multiciliate cell differentiation 1)
(Previous symbol: MCIN)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Multiciliate Differentiation And DNA Synthesis Associated Cell Cycle
Protein1 2
     multicilin1 2
MCIN1 2 3     Multiciliate Differentiation And DNA Synthesis-Associated Cell Cycle
Protein2 3
IDAS2 3 5     Protein Idas2 3
Multiciliate Cell Differentiation 11 2     MCI2 3

External Ids:    HGNC: 400501   Entrez Gene: 3456432   Ensembl: ENSG000002346027   OMIM: 6140865   UniProtKB: D6RGH63   

Export aliases for MCIDAS gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MCIDAS Gene:
MCIDAS (multiciliate differentiation and DNA synthesis associated cell cycle protein) is a protein-coding gene. GO annotations related to this gene include identical protein binding.

UniProtKB/Swiss-Prot: MCIN_HUMAN, D6RGH6
Function: Transcription regulator required for multiciliate cell differentiation. Acts by promoting transcription
of genes required for multiciliate cell formation. Probably acts in a multiprotein complex (By similarity). Plays
a role in mitotic cell cycle progression by promoting cell cycle exit. Modulates GMNN activity by reducing its
affinity for CDT1




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000005.9  NC_018916.2  NT_034772.7  
Regulatory elements:
   Search for regulatory transcription factor binding sites for MCIDAS
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MCIDAS


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q11.2   Ensembl cytogenetic band:  5q11.2   HGNC cytogenetic band: 5q11.2

MCIDAS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MCIDAS gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M054521:  view genomic region     (about GC identifiers)

Start:
54,515,425 bp from pter      End:
54,523,143 bp from pter
Size:
7,719 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MCIN_HUMAN, D6RGH6 (See protein sequence)
Recommended Name: Multicilin  
Size: 385 amino acids; 41720 Da
Subunit: Heterodimer (via coiled-coil domain) with GMNN (via coiled-coil domain); targets GMNN to the nucleus. Can
form homodimers (in vitro, via coiled-coil domain), but these are much less stable than the heterodimer formed
with GMNN
Developmental stage: Probable target of the anaphase promoting complex/cyclosome (APC/C) which regulates its level
in the cell during the mitotic cell cycle. Highly expressed during interphase and early mitosis. Expression
decreases during anaphase to become undetectable during telophase and cytokinesis
Miscellaneous: Was named Idas in reference to the cousin of the Gemini in ancient Greek mythology
(PubMed:21543332)
1 PDB 3D structure from and Proteopedia for MCIDAS:
4BRY (3D)    
Secondary accessions: C9JGY3 D6R920 F8KGQ8

Explore the universe of human proteins at neXtProt for MCIDAS: NX_D6RGH6

Explore proteomics data for MCIDAS at MOPED


See MCIDAS Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001177716.1  
ENSEMBL proteins: 
 ENSP00000422165   ENSP00000426359  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR022786 Geminin_fam

Graphical View of Domain Structure for InterPro Entry D6RGH6

ProtoNet protein and cluster: D6RGH6

UniProtKB/Swiss-Prot: MCIN_HUMAN, D6RGH6
Similarity: Belongs to the geminin family


Find genes that share domains with MCIDAS           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: MCIN_HUMAN, D6RGH6
Function: Transcription regulator required for multiciliate cell differentiation. Acts by promoting transcription
of genes required for multiciliate cell formation. Probably acts in a multiprotein complex (By similarity). Plays
a role in mitotic cell cycle progression by promoting cell cycle exit. Modulates GMNN activity by reducing its
affinity for CDT1

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding IPI--
GO:0042802identical protein binding IPI--
     
Find genes that share ontologies with MCIDAS           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
MCIN_HUMAN, D6RGH6: Nucleus. Note=Excluded from the nucleolus

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IDA--
GO:0005730NOT nucleolus IDA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MCIDAS
Interactions:

    Search GeneGlobe Interaction Network for MCIDAS

2 Interacting proteins for MCIDAS (D6RGH61) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
GMNNO754961EBI-3954372,EBI-371669
MCIDASD6RGH61EBI-3954372,EBI-3954372
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Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006275regulation of DNA replication IEA--
GO:0006351transcription, DNA-templated IEA--
GO:0007049cell cycle IEA--
GO:0007346regulation of mitotic cell cycle IMP--
GO:0042384cilium assembly ISS--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
Selected ApexBio Compounds for MCIDAS (see all 22)     About this table
CompoundAction CAS #
Bleomycin SulfateChemotherapy agent, induces DNA strand break[9041-93-4]
CarboplatinAntitumor agent that forms platinum-DNA adducts[41575-94-4]
Carmofurcytostatic derivative of fluorouracil[61422-45-5]
Cladribinedeoxyadenosine analog that induces apoptosis in CLL cells[4291-63-8]
ClofarabineDeoxycytidine kinase (dCK) substrate[123318-82-1]
CX-5461Potent and selective inhibitor of Pol I-mediated rRNA synthesis[1138549-36-6]
CyclophosphamideNitrogen mustard alkylating agent and prodrug[50-18-0]
Cytarabineinhibits DNA polymerases alpha, delta, and epsilon , and RNA polymerases resulting in suppression of DNA synthesis and repair[147-94-4]
DacarbazineUsed as an antineoplastic in the treatment of malignant melanoma and sarcomas[4342-3-4]
DaptomycinCalcium-dependent antibiotic[103060-53-3]

Browse Tocris compounds for MCIDAS (MCIN)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for MCIDAS gene: 
NM_001190787.1  

Unigene Cluster for MCIDAS:

Multiciliate differentiation and DNA synthesis associated cell cycle protein
Hs.394578  [show with all ESTs]
Unigene Representative Sequence: NM_001190787
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000513468(uc021xyp.1) ENST00000513312 ENST00000515336
miRNA
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Additional mRNA sequence: FR854393.1 

1 DOTS entry:

DT.92019572 

10 AceView cDNA sequences:

BX365442 CR626610 BI861945 BX344388 BX383954 AL558160 BE622574 BX403223 
BE078004 AL580057 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MCIDAS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MCIDAS Expression
About this image

MCIDAS Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MCIDAS Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.394578
    Custom PCR Arrays for MCIDAS
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MCIDAS

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MCIDAS gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Mcidas1 , 5 predicted gene 63205
multiciliate differentiation and DNA synthesis associated more1
81.29(n)1
79.26(a)1
  13 (63.93 cM)5
6224081  NM_001037914.31  NP_001033003.11 
 1129938685 
chicken
(Gallus gallus)
Aves MCIDAS6
multiciliate differentiation and DNA synthesis ass...
44(a)
1 ↔ 1
Z(16586708-16588363)
lizard
(Anolis carolinensis)
Reptilia MCIDAS6
multiciliate differentiation and DNA synthesis ass...
51(a)
1 ↔ 1
2(2617104-2630874)
tropical clawed frog
(Xenopus tropicalis)
Amphibia mci1 Multicilin 59.12(n)
52.49(a)
  100496713  XM_002941110.2  XP_002941156.1 


ENSEMBL Gene Tree for MCIDAS (if available)
TreeFam Gene Tree for MCIDAS (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MCIDAS (see all 163)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1872450921,2
--54515037(+) GTGGCA/GTAACA 1 -- ds50010--------
rs1929389321,2
--54515053(+) GGAAAC/TGTGCC 1 -- ds50010--------
rs4558121,2
C,A,H--54515070(+) GGGCCC/GCCAAG 1 -- ds500112Minor allele frequency- G:0.17MN NA WA CSA EA 558
rs4558171,2
C,A,H--54515090(+) TAGACC/TTCATG 1 -- ds500113Minor allele frequency- T:0.43MN NA WA CSA EA 559
rs1448399851,2
--54515319(+) TCAAAC/TAGGTA 1 -- ds50010--------
rs343036011,2
C--54515364(+) TGGCA-/AAA   
   
/AAAA
AAAAA
2 -- ds5001 cds11NA 2
rs131673481,2
C,F--54515401(+) TCATGT/CGGTAT 1 -- ds500115Minor allele frequency- C:0.35EA NA WA CSA 568
rs1151720951,2
--54515402(+) CATGCA/GGTATA 1 -- ds50010--------
rs2021300951,2
C--54515475(+) TATTTG/TCACAA 1 -- ut310--------
rs4611031,2
C,A--54515478(+) TTGCAA/CAAATA 1 -- ut3110Minor allele frequency- C:0.15NA WA EA 372

HapMap Linkage Disequilibrium report for MCIDAS (54515425 - 54523143 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MCIDAS: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MCIDAS
DNA2.0 Custom Variant and Variant Library Synthesis for MCIDAS

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 614086    OMIM disorders: --


Find genes that share disorders with MCIDAS           About GenesLikeMe


Export disorders for MCIDAS gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MCIDAS gene integrated from 10 sources:
(articles sorted by number of sources associating them with MCIDAS)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Idas, a novel phylogenetically conserved geminin-related protein, binds to geminin and is required for cell cycle progression. (PubMed id 21543332)1, 2, 3 Pefani D.E.... Lygerou Z. (J. Biol. Chem. 2011)
  2. The Geminin and Idas coiled coils preferentially form a heterodimer that inhibits Geminin function in DNA replication licensing. (PubMed id 24064211)1, 2 Caillat C.... Perrakis A. (J. Biol. Chem. 2013)
  3. Multicilin promotes centriole assembly and ciliogenesis during multiciliate cell differentiation. (PubMed id 22231168)1, 3 Stubbs J.L....Kintner C. (Nat. Cell Biol. 2012)
  4. The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (Nature 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 345643 HGNC: 40050 AceView: LOC345643 Ensembl:ENSG00000234602 euGenes: HUgn345643
ECgene: MCIDAS H-InvDB: MCIDAS

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MCIDAS Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MCIDAS gene:
Search GeneIP for patents involving MCIDAS

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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