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Aliases for MCF2L-AS1 Gene

Subcategory (RNA class) for MCF2L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MCF2L-AS1 Gene

  • MCF2L Antisense RNA 1 2 3 5
  • MCF2L Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MCF2L-AS1 Gene

Previous GeneCards Identifiers for MCF2L-AS1 Gene

  • GC13M113623

Summaries for MCF2L-AS1 Gene

GeneCards Summary for MCF2L-AS1 Gene

MCF2L-AS1 (MCF2L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCF2L-AS1 Gene

Genomics for MCF2L-AS1 Gene

Regulatory Elements for MCF2L-AS1 Gene

Enhancers for MCF2L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F112990 1.1 ENCODE 11.8 -22.3 -22285 2.0 ZNF263 RFX1 L3MBTL2 ATF3 POLR2A ZNF140 ZBTB33 MCF2L TUBGCP3 MCF2L-AS1 ENSG00000267868 ENSG00000269356
GH13F113008 0.6 Ensembl ENCODE 11.7 -41.0 -41047 2.4 ELF3 ATF1 MLX ARID4B DMAP1 ZNF48 RAD21 RARA YY1 ZEB1 MCF2L-AS1 MCF2L ENSG00000269376 PIR52168
GH13F113021 0.8 Ensembl ENCODE 11.4 -54.1 -54135 2.5 PKNOX1 MLX ARID4B DMAP1 ZNF48 YY1 SP5 ZHX2 MXD4 PPARG MCF2L MCF2L-AS1 F7 PROZ F10 F10-AS1 KARSP2 ENSG00000269376 PIR52168
GH13F113029 0.6 ENCODE 11.1 -60.9 -60858 0.2 CTCF ARID4B ZNF48 ZIC2 ZNF2 RAD21 GLIS2 PATZ1 ZNF143 SMC3 MCF2L-AS1 MCF2L F10 F10-AS1 KARSP2 PROZ ENSG00000269376 PIR52168
GH13F113083 0.7 ENCODE 10.7 -115.0 -114975 1.5 TBP CTCF MXI1 KLF1 PKNOX1 MAX RFX5 ZNF366 SCRT2 SMC3 MCF2L F7 PROZ MCF2L-AS1 GC13M113086 GC13M113087 PIR52168
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MCF2L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MCF2L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000057138 -276 1401 ZNF76 KLF17 ARID4B SIN3A ZNF2 RAD21 RARA YY1 ZNF121 GLIS2

Genomic Location for MCF2L-AS1 Gene

Chromosome:
13
Start:
112,967,484 bp from pter
End:
112,968,824 bp from pter
Size:
1,341 bases
Orientation:
Minus strand

Genomic View for MCF2L-AS1 Gene

Genes around MCF2L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCF2L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCF2L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCF2L-AS1 Gene

Proteins for MCF2L-AS1 Gene

Post-translational modifications for MCF2L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MCF2L-AS1 Gene

Domains & Families for MCF2L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MCF2L-AS1 Gene

Function for MCF2L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MCF2L-AS1 Gene

Localization for MCF2L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MCF2L-AS1 Gene

Pathways & Interactions for MCF2L-AS1 Gene

SuperPathways for MCF2L-AS1 Gene

No Data Available

Interacting Proteins for MCF2L-AS1 Gene

Gene Ontology (GO) - Biological Process for MCF2L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MCF2L-AS1 Gene

Transcripts for MCF2L-AS1 Gene

mRNA/cDNA for MCF2L-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MCF2L-AS1 Gene

MCF2L antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MCF2L-AS1 Gene

No ASD Table

Relevant External Links for MCF2L-AS1 Gene

GeneLoc Exon Structure for
MCF2L-AS1
ECgene alternative splicing isoforms for
MCF2L-AS1

Expression for MCF2L-AS1 Gene

mRNA expression in normal human tissues for MCF2L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MCF2L-AS1 Gene

This gene is overexpressed in Pituitary (x5.2).

SOURCE GeneReport for Unigene cluster for MCF2L-AS1 Gene:

Hs.667436
genes like me logo Genes that share expression patterns with MCF2L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MCF2L-AS1 Gene

Orthologs for MCF2L-AS1 Gene

Evolution for MCF2L-AS1 Gene

ENSEMBL:
Gene Tree for MCF2L-AS1 (if available)
TreeFam:
Gene Tree for MCF2L-AS1 (if available)

No data available for Orthologs for MCF2L-AS1 Gene

Paralogs for MCF2L-AS1 Gene

No data available for Paralogs for MCF2L-AS1 Gene

Variants for MCF2L-AS1 Gene

Sequence variations from dbSNP and Humsavar for MCF2L-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs112182717 -- 112,967,788(+) ACGCA(C/T)GCTCT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs112201656 -- 112,970,604(+) CCAGG(C/T)TCACA intron-variant, upstream-variant-2KB
rs112662139 -- 112,968,118(+) CTCTC(-/TT)TTTTA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113013025 -- 112,968,160(+) CTTGC(C/T)ACATT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113301613 -- 112,967,801(+) TGGAC(G/T)CTGGA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MCF2L-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759969 CNV loss 17122850
nsv1044644 CNV gain 25217958
nsv1047144 CNV gain 25217958
nsv1125190 CNV insertion 24896259
nsv428291 CNV loss 18775914
nsv509519 CNV insertion 20534489
nsv832723 CNV loss 17160897
nsv951924 CNV deletion 24416366

Relevant External Links for MCF2L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MCF2L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MCF2L-AS1 Gene

Disorders for MCF2L-AS1 Gene

Relevant External Links for MCF2L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MCF2L-AS1

No disorders were found for MCF2L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCF2L-AS1 Gene

Publications for MCF2L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for MCF2L-AS1 Gene

Sources for MCF2L-AS1 Gene

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