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Aliases for MCF2L-AS1 Gene

Subcategory (RNA class) for MCF2L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MCF2L-AS1 Gene

  • MCF2L Antisense RNA 1 2 3 5
  • MCF2L Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MCF2L-AS1 Gene

Previous GeneCards Identifiers for MCF2L-AS1 Gene

  • GC13M113623

Summaries for MCF2L-AS1 Gene

GeneCards Summary for MCF2L-AS1 Gene

MCF2L-AS1 (MCF2L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MCF2L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCF2L-AS1 Gene

Genomics for MCF2L-AS1 Gene

Regulatory Elements for MCF2L-AS1 Gene

Enhancers for MCF2L-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H113021 1.5 Ensembl ENCODE dbSUPER 11.4 -54.1 -54135 2.5 FOXA2 PKNOX1 MLX ARID4B DMAP1 YY1 FOS SP5 ZHX2 MXD4 MCF2L MCF2L-AS1 F7 PROZ F10 KARSP2 F10-AS1 ENSG00000269376 PIR52168
GH13H113008 1.2 ENCODE dbSUPER 11.7 -41.0 -41047 2.4 ELF3 FOXA2 ATF1 MLX ARID4B DMAP1 RAD21 RARA YY1 SLC30A9 MCF2L-AS1 MCF2L ENSG00000269376 PIR52168
GH13H113083 1 ENCODE dbSUPER 10.7 -115.0 -114975 1.5 TBP CTCF PKNOX1 MXI1 ZBTB21 MAX RFX5 SCRT2 SMC3 ZNF600 MCF2L F7 PROZ MCF2L-AS1 GC13M113087 GC13M113086 PIR52168
GH13H112978 1.3 FANTOM5 Ensembl ENCODE dbSUPER 8 -11.0 -10987 3.3 ZFHX2 SCRT2 MNT ZNF623 MCF2L MCF2L-AS1 ENSG00000269356
GH13H112968 1.2 ENCODE dbSUPER 8 -0.3 -280 2 NFIB ARID4B SIN3A ZNF76 KLF17 ZNF2 RAD21 RARA YY1 ZNF121 MCF2L-AS1 ENSG00000267868 ENSG00000269356
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MCF2L-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MCF2L-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000066058 -276 1001 NFIB ARID4B SIN3A ZNF76 KLF17 ZNF2 RAD21 RARA GLIS2 SCRT2

Genomic Locations for MCF2L-AS1 Gene

Genomic Locations for MCF2L-AS1 Gene
1,341 bases
Minus strand

Genomic View for MCF2L-AS1 Gene

Genes around MCF2L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MCF2L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MCF2L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCF2L-AS1 Gene

Proteins for MCF2L-AS1 Gene

Post-translational modifications for MCF2L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MCF2L-AS1 Gene

Domains & Families for MCF2L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MCF2L-AS1 Gene

Function for MCF2L-AS1 Gene

Phenotypes From GWAS Catalog for MCF2L-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MCF2L-AS1 Gene

Localization for MCF2L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MCF2L-AS1 Gene

Pathways & Interactions for MCF2L-AS1 Gene

SuperPathways for MCF2L-AS1 Gene

No Data Available

Interacting Proteins for MCF2L-AS1 Gene

Gene Ontology (GO) - Biological Process for MCF2L-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MCF2L-AS1 Gene

Drugs & Compounds for MCF2L-AS1 Gene

No Compound Related Data Available

Transcripts for MCF2L-AS1 Gene

mRNA/cDNA for MCF2L-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MCF2L-AS1 Gene

MCF2L antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MCF2L-AS1 Gene

No ASD Table

Relevant External Links for MCF2L-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MCF2L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MCF2L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MCF2L-AS1 Gene

This gene is overexpressed in Pituitary (x5.2).

SOURCE GeneReport for Unigene cluster for MCF2L-AS1 Gene:

genes like me logo Genes that share expression patterns with MCF2L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MCF2L-AS1 Gene

Orthologs for MCF2L-AS1 Gene

Evolution for MCF2L-AS1 Gene

Gene Tree for MCF2L-AS1 (if available)
Gene Tree for MCF2L-AS1 (if available)

No data available for Orthologs for MCF2L-AS1 Gene

Paralogs for MCF2L-AS1 Gene

No data available for Paralogs for MCF2L-AS1 Gene

Variants for MCF2L-AS1 Gene

Sequence variations from dbSNP and Humsavar for MCF2L-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1002216968 -- 112,970,314(+) TTTGG(G/T)TGTGG intron-variant, upstream-variant-2KB
rs1002496773 -- 112,969,092(+) CGGTG(C/T)ACTCA intron-variant, upstream-variant-2KB
rs1003375169 -- 112,967,275(+) AGACC(A/T)TGTGT intron-variant, upstream-variant-2KB
rs1004144317 -- 112,970,438(+) GATCA(A/C)AGCTG intron-variant, upstream-variant-2KB
rs1005298589 -- 112,969,360(+) AGGAT(C/T)ATTTT intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for MCF2L-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951924 CNV deletion 24416366
nsv832723 CNV loss 17160897
nsv509519 CNV insertion 20534489
nsv428291 CNV loss 18775914
nsv1125190 CNV insertion 24896259
nsv1047144 CNV gain 25217958
nsv1044644 CNV gain 25217958
esv2759969 CNV loss 17122850

Relevant External Links for MCF2L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MCF2L-AS1 Gene

Disorders for MCF2L-AS1 Gene

Relevant External Links for MCF2L-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MCF2L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MCF2L-AS1 Gene

Publications for MCF2L-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for MCF2L-AS1 Gene

Sources for MCF2L-AS1 Gene

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