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Aliases for MCF2L Gene

Aliases for MCF2L Gene

  • MCF.2 Cell Line Derived Transforming Sequence-Like 2 3
  • DBLs Big Sister 3 4
  • KIAA0362 4 6
  • OST 3 6
  • MCF2 Transforming Sequence-Like Protein 3
  • MCF2-Transforming Sequence-Like Protein 4
  • Guanine Nucleotide Exchange Factor DBS 3
  • ARHGEF14 3
  • DBS 3

External Ids for MCF2L Gene

Previous GeneCards Identifiers for MCF2L Gene

  • GC13P112232
  • GC13U900016
  • GC13P112709
  • GC13P111570
  • GC13P112670
  • GC13P113548
  • GC13P094063

Summaries for MCF2L Gene

GeneCards Summary for MCF2L Gene

MCF2L (MCF.2 Cell Line Derived Transforming Sequence-Like) is a Protein Coding gene. Among its related pathways are Signaling by FGFR and RhoGDI Pathway. GO annotations related to this gene include Rho guanyl-nucleotide exchange factor activity and 1-phosphatidylinositol binding. An important paralog of this gene is ARHGEF40.

UniProtKB/Swiss-Prot for MCF2L Gene

  • Guanine nucleotide exchange factor that potentially links pathways that signal through RAC1, RHOA and CDC42. Catalyzes guanine nucleotide exchange on RHOA and CDC42 and interacts specifically with the GTP-bound form of RAC1, suggesting that it functions as an effector of RAC1. May also participate in axonal transport in the brain. Becomes activated and highly tumorigenic by truncation of the N-terminus (By similarity). Isoform 5 activates CDC42.

Gene Wiki entry for MCF2L Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MCF2L Gene

Genomics for MCF2L Gene

Regulatory Elements for MCF2L Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MCF2L Gene

Start:
112,894,378 bp from pter
End:
113,099,739 bp from pter
Size:
205,362 bases
Orientation:
Plus strand

Genomic View for MCF2L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MCF2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MCF2L Gene

Proteins for MCF2L Gene

  • Protein details for MCF2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15068-MCF2L_HUMAN
    Recommended name:
    Guanine nucleotide exchange factor DBS
    Protein Accession:
    O15068
    Secondary Accessions:
    • A2A2X1
    • A2A2X2
    • A2A3G6
    • A2A3G8
    • B4DHD6
    • B4DIL6
    • E9PDN8
    • Q5JU56
    • Q5VXT1
    • Q6ZWD4
    • Q765G8
    • Q765G9
    • Q8N679

    Protein attributes for MCF2L Gene

    Size:
    1137 amino acids
    Molecular mass:
    128109 Da
    Quaternary structure:
    • Interacts with CCPG1, which results in specific inhibition of its exchange activity toward RHOA (By similarity). Interacts with an array of inositol phospholipids such as phosphatidylinositol 3-phosphate (PI3P), phosphatidylinositol 4-phosphate (PI4P) and phosphatidylinositol 5-phosphate (PI5P).
    SequenceCaution:
    • Sequence=BAA20817.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAM24069.3; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAM24070.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for MCF2L Gene

neXtProt entry for MCF2L Gene

Proteomics data for MCF2L Gene at MOPED

Post-translational modifications for MCF2L Gene

  • Ubiquitination at Lys182
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for MCF2L Gene

Domains for MCF2L Gene

Gene Families for MCF2L Gene

HGNC:
  • ARHGEF :Rho guanine nucleotide exchange factors
  • PLEKH :Pleckstrin homology (PH) domain containing

Graphical View of Domain Structure for InterPro Entry

O15068

UniProtKB/Swiss-Prot:

MCF2L_HUMAN :
  • O15068
Domain:
  • The CRAL-TRIO domain is involved in interaction with inositol phospholipids.
  • The DH domain is involved in interaction with CCPG1.
  • Contains 1 CRAL-TRIO domain.
  • Contains 1 DH (DBL-homology) domain.
  • Contains 1 PH domain.
  • Contains 1 SH3 domain.
Family:
  • Belongs to the MCF2 family.
Similarity:
  • Contains 1 spectrin repeat.
genes like me logo Genes that share domains with MCF2L: view

Function for MCF2L Gene

Molecular function for MCF2L Gene

UniProtKB/Swiss-Prot Function: Guanine nucleotide exchange factor that potentially links pathways that signal through RAC1, RHOA and CDC42. Catalyzes guanine nucleotide exchange on RHOA and CDC42 and interacts specifically with the GTP-bound form of RAC1, suggesting that it functions as an effector of RAC1. May also participate in axonal transport in the brain. Becomes activated and highly tumorigenic by truncation of the N-terminus (By similarity). Isoform 5 activates CDC42.

Gene Ontology (GO) - Molecular Function for MCF2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005089 Rho guanyl-nucleotide exchange factor activity IEA --
GO:0005515 protein binding --
GO:0005545 1-phosphatidylinositol binding IEA --
genes like me logo Genes that share ontologies with MCF2L: view
genes like me logo Genes that share phenotypes with MCF2L: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MCF2L

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MCF2L Gene

Localization for MCF2L Gene

Subcellular locations from UniProtKB/Swiss-Prot for MCF2L Gene

Cytoplasm. Cell membrane; Peripheral membrane protein; Cytoplasmic side.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MCF2L Gene COMPARTMENTS Subcellular localization image for MCF2L gene
Compartment Confidence
plasma membrane 5
cytosol 4
nucleus 2
endoplasmic reticulum 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for MCF2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 22664934
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane --
GO:0030027 lamellipodium IEA --
genes like me logo Genes that share ontologies with MCF2L: view

Pathways for MCF2L Gene

genes like me logo Genes that share pathways with MCF2L: view

Gene Ontology (GO) - Biological Process for MCF2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007264 small GTPase mediated signal transduction TAS --
GO:0007266 Rho protein signal transduction IEA --
GO:0035023 regulation of Rho protein signal transduction --
GO:0035556 intracellular signal transduction --
GO:0043065 positive regulation of apoptotic process TAS --
genes like me logo Genes that share ontologies with MCF2L: view

Compounds for MCF2L Gene

(3) HMDB Compounds for MCF2L Gene

Compound Synonyms Cas Number PubMed IDs
Guanosine diphosphate
  • 5'-GDP
146-91-8
Guanosine monophosphate
  • 5'-GMP
85-32-5
Guanosine triphosphate
  • 5'-GTP
86-01-1

(2) Novoseek inferred chemical compound relationships for MCF2L Gene

Compound -log(P) Hits PubMed IDs
phosphoinositide 48.2 4
guanine 37.3 1
genes like me logo Genes that share compounds with MCF2L: view

Transcripts for MCF2L Gene

Unigene Clusters for MCF2L Gene

MCF.2 cell line derived transforming sequence-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MCF2L

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MCF2L Gene

No ASD Table

Relevant External Links for MCF2L Gene

GeneLoc Exon Structure for
MCF2L
ECgene alternative splicing isoforms for
MCF2L

Expression for MCF2L Gene

mRNA expression in normal human tissues for MCF2L Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MCF2L Gene

This gene is overexpressed in Brain - Cerebellum (6.1) and Brain - Cerebellar Hemisphere (5.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MCF2L Gene

SOURCE GeneReport for Unigene cluster for MCF2L Gene Hs.170422

genes like me logo Genes that share expressions with MCF2L: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for MCF2L Gene

Orthologs for MCF2L Gene

This gene was present in the common ancestor of animals.

Orthologs for MCF2L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MCF2L 35
  • 99.26 (n)
  • 99.56 (a)
MCF2L 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MCF2L 35
  • 82.91 (n)
  • 83.18 (a)
MCF2L 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MCF2L 35
  • 84.43 (n)
  • 86.12 (a)
MCF2L 36
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mcf2l 35
  • 85.41 (n)
  • 89.31 (a)
Mcf2l 16
Mcf2l 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MCF2L 36
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MCF2L 36
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mcf2l 35
  • 84.84 (n)
  • 88.66 (a)
chicken
(Gallus gallus)
Aves MCF2L 35
  • 71.08 (n)
  • 76.64 (a)
MCF2L 36
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MCF2L 36
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497730 35
  • 67.43 (n)
  • 71.22 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6690 35
zebrafish
(Danio rerio)
Actinopterygii mcf2la 35
  • 66.64 (n)
  • 66.45 (a)
mcf2la 36
  • 62 (a)
OneToMany
mcf2lb 36
  • 57 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG30440 36
  • 24 (a)
OneToMany
CG30440 37
  • 40 (a)
worm
(Caenorhabditis elegans)
Secernentea cgef-1 36
  • 26 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToMany
Species with no ortholog for MCF2L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MCF2L Gene

ENSEMBL:
Gene Tree for MCF2L (if available)
TreeFam:
Gene Tree for MCF2L (if available)

Paralogs for MCF2L Gene

genes like me logo Genes that share paralogs with MCF2L: view

Variants for MCF2L Gene

Sequence variations from dbSNP and Humsavar for MCF2L Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs2042 -- 112,957,529(-) GAGGC(A/G)CGGCA intron-variant
rs10665 -- 113,098,517(+) TATGG(A/G)TGACG utr-variant-3-prime, nc-transcript-variant
rs478261 -- 113,090,920(-) GGGCA(C/T)GGGAG intron-variant
rs486849 -- 113,077,772(-) GACAC(A/G)GAGGT intron-variant
rs487612 -- 113,086,964(-) TACAC(A/G)CCTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MCF2L Gene

Variant ID Type Subtype PubMed ID
dgv596e1 CNV Complex 17122850
nsv428291 CNV Loss 18775914
nsv901039 CNV Loss 21882294
nsv832723 CNV Loss 17160897
essv1950 CNV CNV 17122850
dgv1797n71 CNV Loss 21882294
nsv509519 CNV Insertion 20534489
nsv901043 CNV Loss 21882294
nsv901045 CNV Loss 21882294
dgv1798n71 CNV Loss 21882294
esv2519311 CNV Insertion 19546169
esv1191518 CNV Insertion 17803354
esv2748215 CNV Deletion 23290073
esv2748216 CNV Deletion 23290073
esv1008448 CNV Deletion 20482838
esv1345410 CNV Insertion 17803354
esv2748217 CNV Deletion 23290073
esv2748219 CNV Deletion 23290073
esv2064600 CNV Deletion 18987734
esv2748220 CNV Deletion 23290073
nsv901049 CNV Loss 21882294
esv2748221 CNV Deletion 23290073
esv2748222 CNV Deletion 23290073
nsv518044 CNV Gain 19592680
nsv9111 CNV Loss 18304495
esv26193 CNV Loss 19812545
nsv821247 CNV Deletion 20802225
nsv512341 CNV Loss 21212237
nsv901050 CNV Loss 21882294
esv2748223 CNV Deletion 23290073
esv22881 CNV Loss 19812545
esv2748224 CNV Deletion 23290073
esv2671771 CNV Deletion 23128226
esv2748225 CNV Deletion 23290073
dgv1799n71 CNV Loss 21882294
esv2748226 CNV Deletion 23290073
esv2748227 CNV Deletion 23290073
esv2748228 CNV Deletion 23290073
esv2748230 CNV Deletion 23290073
esv30000 CNV Loss 17803354
esv2748231 CNV Deletion 23290073
esv2748232 CNV Deletion 23290073
nsv901053 CNV Loss 21882294
esv2748233 CNV Deletion 23290073
nsv901054 CNV Loss 21882294
esv2748234 CNV Deletion 23290073
esv1660371 CNV Deletion 17803354
dgv1800n71 CNV Loss 21882294
nsv832724 CNV Loss 17160897
nsv519639 CNV Loss 19592680
nsv819070 CNV Gain 19587683
esv2748235 CNV Deletion 23290073
esv2748236 CNV Deletion 23290073
esv2748237 CNV Deletion 23290073
esv2748238 CNV Deletion 23290073
esv1104322 CNV Insertion 17803354
nsv64645 CNV Loss 16902084
esv2748239 CNV Deletion 23290073
esv1071073 CNV Deletion 17803354
esv1002984 CNV Deletion 20482838
nsv818996 CNV Gain 17921354
esv2748241 CNV Deletion 23290073
esv992602 CNV Insertion 20482838
esv2748242 CNV Deletion 23290073
esv2748243 CNV Deletion 23290073

Relevant External Links for MCF2L Gene

HapMap Linkage Disequilibrium report
MCF2L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MCF2L Gene

Disorders for MCF2L Gene

Relevant External Links for MCF2L

Genetic Association Database (GAD)
MCF2L
Human Genome Epidemiology (HuGE) Navigator
MCF2L
genes like me logo Genes that share disorders with MCF2L: view

No data available for UniProtKB/Swiss-Prot for MCF2L Gene

Publications for MCF2L Gene

  1. Role of the Sec14-like domain of Dbl family exchange factors in the regulation of Rho family GTPases in different subcellular sites. (PMID: 15157669) Ueda S. … Satoh T. (Cell. Signal. 2004) 3 4 23
  2. Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9205841) Nagase T. … Ohara O. (DNA Res. 1997) 2 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Mutation of ARHGAP9 in patients with coronary spastic angina. (PMID: 19911011) Takefuji M. … Kaibuchi K. (J. Hum. Genet. 2010) 3 48
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48

Products for MCF2L Gene

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