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Aliases & Descriptions for MCF2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DBL 1 , 2 , 3 , 5 OTTHUMP00000024156 2
Descriptions MCF.2 cell line derived transforming sequence 2 Oncogene MCF2 (oncogene DBL) 2 Proto-oncogene MCF-2 3
Search outside databases for aliases for MCF2 genePrevious GC identifers: GC0XM133248 GC0XM135521 GC0XM136608 GC0XM137369 GC0XM138389
Summaries for MCF2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for MCF2 : MCF2 is a member of a large family of GDP-GTP exchange factors that modulate the activity of smallGTPases of the Rho family. Five-prime recombinations result in the loss of N-terminal codons,producing MCF2 variants with oncogenic potential.[supplied by OMIM] UniProtKB/Swiss-Prot: MCF2_HUMAN, P10911 Function : Guanine nucleotide exchange factor (GEF) that modulates the Rho family of GTPases.Promotes the conversion of some member of the Rho family GTPase from the GDP-bound to theGTP-bound form. Isoform 1 exhibits no activity toward RHOA, RAC1 or CDC42. Isoform 2 exhibitsdecreased GEF activity toward CDC42. Isoform 3 exhibits a weak but significant activity towardRAC1 and CDC42. Isoform 4 exhibits significant activity toward RHOA and CDC42. The truncated DBLoncogene is active toward RHOA, RAC1 and CDC42
Gene Wiki entry for MCF2
Genomic Location for MCF2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the MCF2 gene Entrez Gene cytogenetic band: Xq27 Ensembl cytogenetic band: Xq27.1 HGNC cytogenetic band: Xq26.3-q27.1 MCF2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XM138491:
(about GC identifiers )
Start:
138,491,596 bp from pter
End:
138,618,047 bp from pter
Size:
126,452 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000023.9 NT_011786.15 Proteins for MCF2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MCF2_HUMAN, P10911 (See
protein sequence )Recommended Name: Proto-oncogene DBL Size : 925 amino acids; 107673 Da
Subunit : Interacts with an array of inositol phospholipids such as phosphatidylinositol 3-phosphate(PI3P), phosphatidylinositol 4-phosphate (PI4P) and phosphatidylinositol 5-phosphate (PI5P). Mayinteract with CCPG1
Subcellular location : Cytoplasm
Subcellular location : Isoform 1: Membrane
Subcellular location : Isoform 3: Membrane. Note=Colocalizes with CDC42 to plasma membrane
Secondary accessions : P14919 Q5JYJ4 Q8IUF3 Q8IUF4 Q9UJB3Alternative splicing : 4 isoforms : P10911-1 P10911-2 P10911-3 P10911-4
REFSEQ proteins (2 alternative transcripts):
NP_001093325.1 NP_005360.3 ENSEMBL proteins: ENSP00000359605 ENSP00000359610 ENSP00000359608 ENSP00000342204 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for MCF2: Assays for MCF2:
Protein
Domains/ Families for MCF2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10911 ProtoNet protein and cluster: P10911
4 Blocks protein families : IPB000219 DH domain IPB001849 Pleckstrin-like IPB002017 Spectrin repeat IPB003957 CCAAT-binding transcription factor subunit A signature UniProtKB/Swiss-Prot: MCF2_HUMAN, P10911 Domain : The CRAL-TRIO domain is involved in interaction with inositol phospholipidsDomain : The DH domain is essential for transforming activity and directly catalyzes GDP-GTPexchange activity. It may interact with CCPG1 Similarity : Belongs to the MCF2 familySimilarity : Contains 1 CRAL-TRIO domainSimilarity : Contains 1 DH (DBL-homology) domainSimilarity : Contains 1 PH domainSimilarity : Contains 1 spectrin repeat
Gene Function for MCF2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Clones , and
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_005369 Applied Biosystems Silencer ® siRNAs for MCF2 Sigma-Aldrich siRNA for MCF2 Sigma-Aldrich shRNA Panels and shRNA for MCF2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099855                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099855                                  untagged cDNA clones in CMV expression vector (see all 3 ): AL117234  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001099855 UniProtKB/Swiss-Prot: MCF2_HUMAN, P10911 Function : Guanine nucleotide exchange factor (GEF) that modulates the Rho family of GTPases.Promotes the conversion of some member of the Rho family GTPase from the GDP-bound to theGTP-bound form. Isoform 1 exhibits no activity toward RHOA, RAC1 or CDC42. Isoform 2 exhibitsdecreased GEF activity toward CDC42. Isoform 3 exhibits a weak but significant activity towardRAC1 and CDC42. Isoform 4 exhibits significant activity toward RHOA and CDC42. The truncated DBLoncogene is active toward RHOA, RAC1 and CDC42
Genatlas biochemistry entry for MCF2 :transforming sequence,MCF.2 cell line derived,highly expressed in brain,specifically activatingCDC42 and not RAC or RHOA
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Mcf2) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005085 guanyl-nucleotide exchange factor activity
IEA -- GO:0005089 Rho guanyl-nucleotide exchange factor activity
IEA -- GO:0005515 protein binding
IPI 18470881
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Pathways & Interactions for MCF2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for MCF2 5/99 Interacting proteins for MCF2 (P10911 1 , 2 ENSP00000359610 3 ) via UniProtKB, MINT, and/or STRING (see all 99
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007242 intracellular signaling cascade
IEA -- GO:0035023 regulation of Rho protein signal transduction
IEA --
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Drugs & Compounds for MCF2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for MCF2 6 Novoseek chemical compound relationships for MCF2 gene
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Transcripts for MCF2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_005369 Sigma-Aldrich siRNA for MCF2 Sigma-Aldrich shRNA Panels and shRNA for MCF2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001099855 NM_005369
REFSEQ mRNAs for MCF2 gene (2 alternative transcripts): NM_001099855.1 NM_005369.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001099855 NM_005369
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099855                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099855                                  untagged cDNA clones in CMV expression vector (see all 3 ): AL117234  
Additional cDNA sequence: AB085901.1 AB085902.1 AK296488.1 AK296529.1 AK302957.1 AK313900.1 AK316416.1 AL117234.1 BC151247.1 J03639.1 X12556.1 X13230.1
5 DOTS entries : DT.95366728 DT.92070670 DT.92070671 DT.95366727 DT.121301235
24 AceView cDNA sequences :AL117234 BQ189571 AL040486 BQ632854 BX093553 AB085901 BQ632565 AB085902 NM_005369 AL120131 AL046410 AW341436 BF062094 X12556 BG205068 X13230 N35192 AV752834 AI004109 AA610032 N23406 J03639 AA758713 BU568480
highest scoring ESTs for MCF2 :X12556 AL117234 AL120131 BQ632854 AA610032 AA758713 AB085901 AB085902 AI004109 AL040486
Unigene Cluster for MCF2: MCF.2 cell line derived transforming sequence Hs.387262 [show with all ESTs ] Unigene Representative Sequence: NM_001099855 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000370573
ENST00000370578
ENST00000370576
ENST00000338585
Expression for MCF2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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MCF2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for MCF2 1 / 2 / 3
7 probe-sets matching MCF2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGTAATTCTSOURCE GeneReport for Unigene cluster: Hs.387262 Expression variation in blood from EXPOLDB for MCF2
UniProtKB/Swiss-Prot: MCF2_HUMAN, P10911 Tissue specificity : Isoform 1 is expressed only in brain. Isoform 3 is expressed in heart, kidney,spleen, liver and testis. Isoform 4 is expressed in brain, heart, kidney, testis, placenta,stomach and peripheral blood. The protein is detectable in brain, heart, kidney, intestine,muscle, lung and testis
Orthologs for MCF2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for MCF2 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for MCF2 ENSEMBL Gene Tree for MCF2 Paralogs for MCF2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for MCF2 gene MCF2L 2 KIAA1755 2 MCF2L2 2
SNPs/Variants for MCF2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for MCF2 (up to first 250kb)
Disorders & Mutations for MCF2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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and/or TGDB .)
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OMIM: 311030 UniProtKB/Swiss-Prot: MCF2_HUMAN, P10911
MCF2 and DBL represent two activated versions of the same proto-oncogene
5 Novoseek disease relationships for MCF2 gene
About this table Tumor Gene Database : MCF2
Medical News for MCF2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for MCF2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/175 PubMed articles for MCF2 gene (see all 175
): Activation of a mcf.2 oncogene by deletion of amino-terminal coding sequences. (PubMed id 2577874) 2, 3, 4 Noguchi T.... Birnbaum D. (1988) Alternative splicing variants of the human DBL (MCF-2) proto- oncogene. (PubMed id 12445822) 1, 3, 4 Komai K.... Shiozawa S. (2002) Localization of the 5' end of the MCF2 oncogene to human chromosome 15q15----q23. (PubMed id 1611909) 1, 2, 3 Galland F....Birnbaum D. (1992) The DNA sequence of the human X chromosome. (PubMed id 15772651) 3, 4 Ross M.T.... Bentley D.R. (2005) Cellular transformation and guanine nucleotide exchange activity are catalyzed by a common domain on the dbl oncogene product. (PubMed id 8276860) 3, 4 Hart M.J.... Zheng Y. (1994) A region of proto-dbl essential for its transforming activity shows sequence similarity to a yeast cell cycle gene, CDC24, and the human breakpoint cluster gene, bcr. (PubMed id 2065022) 3, 4 Ron D.... Eva A. (1991) The predicted DBL oncogene product defines a distinct class of transforming proteins. (PubMed id 3281159) 3, 4 Eva A.... Aaronson S.A. (1988) Molecular cloning and characterization of the human dbl proto- oncogene: evidence that its overexpression is sufficient to transform NIH/3T3 cells. (PubMed id 3056717) 3, 4 Ron D.... Eva A. (1988) Characterization of novel splicing variants of the mouse MCF-2 (DBL) proto-oncogene. (PubMed id 13679059) 1, 3 Komai K....Shiozawa S. (2003) Identification of Rho GTPase-dependent sites in the Dbl homology domain of oncogenic Dbl that are required for transformation. (PubMed id 10854437) 1, 3 Zhu K....Zheng Y. (2000)
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Genome Databases showing MCF2
(According to
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euGenes ,
Ensembl ,
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ECgene ,
and/or
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Specialized Databases showing MCF2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for MCF2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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