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Aliases & Descriptions for MCC
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp762O1615 2 FLJ38893 2 FLJ46755 2 MCC1 2
Descriptions Protein MCC 3 mutated in colorectal cancers 2
Search outside databases for aliases for MCC genePrevious GC identifers: GC05M111957 GC05M112808 GC05M112392 GC05M112437 GC05M112434
Summaries for MCC (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for MCC : This gene is a candidate colorectal tumor suppressor gene that is thought to negatively regulatecell cycle progression. The orthologous gene in the mouse expresses a phosphoprotein associatedwith the plasma membrane and membrane organelles, and overexpression of the mouse protein inhibitsentry into S phase. Multiple transcript variants encoding different isoforms have been found forthis gene. [provided by RefSeq] UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508 Function : Candidate for the putative colorectal tumor suppressor gene located at 5q21
Gene Wiki entry for MCC
Genomic Location for MCC
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the MCC gene Entrez Gene cytogenetic band: 5q21 Ensembl cytogenetic band: 5q22.2 HGNC cytogenetic band: 5q21-q22 MCC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M112388:
(about GC identifiers )
Start:
112,385,695 bp from pter
End:
112,852,426 bp from pter
Size:
466,732 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000005.8 NT_034772.5 Proteins for MCC
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508 (See
protein sequence )Recommended Name: Colorectal mutant cancer protein Size : 829 amino acids; 93055 Da
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001078846.1 NP_002378.1 ENSEMBL proteins: ENSP00000305617 ENSP00000386227 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells Antibodies for MCC: Assays for MCC:
Protein
Domains/ Families for MCC(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P23508 ProtoNet protein and cluster: P23508
UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508 Similarity : Belongs to the MCC family
Gene Function for MCC
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002387 Applied Biosystems Silencer ® siRNAs for MCC Sigma-Aldrich siRNA for MCC Sigma-Aldrich shRNA Panels and shRNA for MCC Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001085377                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001085377                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001085377  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001085377 UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508 Function : Candidate for the putative colorectal tumor suppressor gene located at 5q21
Genatlas biochemistry entry for MCC :mutated in colorectal cancer (see TSG5A) 2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for MCC
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for MCC 5/35 Interacting proteins for MCC (P23508 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 35
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for MCC (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for MCC
Transcripts for MCC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002387 Sigma-Aldrich siRNA for MCC Sigma-Aldrich shRNA Panels and shRNA for MCC Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001085377 NM_002387
REFSEQ mRNAs for MCC gene (2 alternative transcripts): NM_001085377.1 NM_002387.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001085377 NM_002387
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001085377                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001085377                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001085377  
Additional cDNA sequence: AK096212.1 AK128596.1 AK300259.1 AL359558.1 BC009279.2 BC018919.2 BC043431.2 BX537952.1 BX647710.1 CR749713.1 M62397.1
12 DOTS entries : DT.441438 DT.439205 DT.206787 DT.99936084 DT.437378 DT.101982227 DT.120847212 DT.40210745 DT.92419764 DT.92426124 DT.120847111 DT.100800143
24/155 AceView cDNA sequences (see all 155
):CA337225 AV661084 BM313537 CF890841 CB305455 CD515997 AW169982 AA018666 BM665160 BM666451 BQ188031 AK096212 BX445883 N29051 BQ423407 BM695282 AL706228 AI031639 AK128596 N85260 BV202211 BU189477 BC009279 AV645733
highest scoring ESTs for MCC :AA587459 BC009279 BC018919 BF203829 BF308292 BX647710 M62397 AA053723 AA317497 AI025592
Unigene Cluster for MCC: Mutated in colorectal cancers Hs.593171 [show with all ESTs ] Unigene Representative Sequence: NM_001085377 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for MCC ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b SP1 :                 -                             SP2 :     -             -                             SP3 :     -   -           -                             SP4 :                                            
About this scheme ECgene alternative splicing isoforms for MCC 2 Ensembl transcripts including schematic representations : ENST00000302475
ENST00000408903
Expression for MCC
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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MCC expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for MCC 1 / 2 / 3
12 probe-sets matching MCC gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGACTAAGTTSOURCE GeneReport for Unigene cluster: Hs.593171 Expression variation in blood from EXPOLDB for MCC
UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508 Tissue specificity : Expressed in a variety of tissues
Orthologs for MCC
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for MCC gene from 5/8 species (see all 8
)
About this table Species with no ortholog for MCC ENSEMBL Gene Tree for MCC Paralogs for MCC (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for MCC gene USHBP1 2
SNPs/Variants for MCC (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for MCC (up to first 250kb)
Disorders & Mutations for MCC
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 159350 UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508
Is probably involved in early stages of colorectal neoplasia in both sporadic and familialtumors
9 Novoseek disease relationships for MCC gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
familial adenomatous polyposis
76.79
4
1565631 (2), 1325652 (2)
colorectal tumors
75.96
7
1848370 (2), 8626604 (2), 1651562 (1), 1682292 (1)
colorectal cancer
53.37
5
1848370 (1), 1668888 (1), 1682292 (1), 1339098 (1) (see all 5 )
colorectal carcinoma
53.15
3
1682292 (2), 1325652 (1)
nsclc
45.69
2
7812947 (1)
colon cancer
34.59
4
1565631 (2), 1314630 (1), 11311560 (1)
tumors
27.00
10
11311560 (2), 7796415 (1), 8226275 (1), 7812947 (1) (see all 8 )
cancer lung
23.18
2
1565631 (1), 1348017 (1)
cancer
4.80
2
1565631 (2)
About this table Tumor Gene Database : MCC Breast Cancer Gene Database : MCC
Medical News for MCC (Possibly Related Articles in
Doctor's Guide )
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Publications for MCC (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/35 PubMed articles for MCC gene (see all 35
): Identification of a gene located at chromosome 5q21 that is mutated in colorectal cancers. (PubMed id 1848370) 1, 2, 3, 4 Kinzler K.W.... Nakamura Y. (1991) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Mutations of chromosome 5q21 genes in FAP and colorectal cancer patients. (PubMed id 1651563) 3, 4 Nishisho I....Hedge P. (1991) MCC, a cytoplasmic protein that blocks cell cycle progression from the G0/G1 to S phase. (PubMed id 8626604) 1, 3 Matsumine A....Akiyama T. (1996) Mutated in colorectal cancer, a putative tumor suppressor for serrated colorectal cancer, selectively represses beta-catenin-dependent transcription. (PubMed id 18591935) 3 Fukuyama R....Sizemore N. (2008) Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931) 3 Ewing R.M....Figeys D. (2007) The LIFEdb database in 2006. (PubMed id 16381901) 3 Mehrle A....Wiemann S. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3 Ota T....Sugano S. (2004) A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. (PubMed id 14743216) 3 Bouwmeester T....Superti-Furga G. (2004) From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336) 3 Wiemann S....Poustka A. (2004)
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Genome Databases showing MCC
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing MCC
(According to HUGE )
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--
Specialized Databases showing MCC (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for MCC (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for MCC:
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