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MCC Gene

protein-coding   GIFtS: 60

GC05M112388
mutated in colorectal cancers
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
DKFZp762O1615 2
FLJ38893 2
FLJ46755 2
MCC1 2
Descriptions
Protein MCC 3
mutated in colorectal cancers 2
External Ids
HGNC: 69351
Entrez Gene: 41632
UniProtKB: P235083
Ensembl: ENSG000001714447
Search outside databases for aliases for MCC gene

Previous GC identifers: GC05M111957 GC05M112808 GC05M112392 GC05M112437 GC05M112434

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for MCC:
This gene is a candidate colorectal tumor suppressor gene that is thought to negatively regulate
cell cycle progression. The orthologous gene in the mouse expresses a phosphoprotein associated
with the plasma membrane and membrane organelles, and overexpression of the mouse protein inhibits
entry into S phase. Multiple transcript variants encoding different isoforms have been found for
this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508
Function: Candidate for the putative colorectal tumor suppressor gene located at 5q21

Gene Wiki entry for MCC

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the MCC gene  

Entrez Gene cytogenetic band: 5q21   Ensembl cytogenetic band:  5q22.2   HGNC cytogenetic band: 5q21-q22

MCC Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M112388:     (about GC identifiers)

Start:
112,385,695 bp from pter
End:
112,852,426 bp from pter
Size:
466,732 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000005.8  NT_034772.5  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508 (See protein sequence)
Recommended Name: Colorectal mutant cancer protein  
Size: 829 amino acids; 93055 Da

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_001078846.1  NP_002378.1  


    ENSEMBL proteins: 
    ENSP00000305617 ENSP00000386227 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (MCC)
    Human Recombinant Proteins from Abnova (MCC)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 


    Antibodies for MCC: 
    Browse Antibodies Central at Invitrogen
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    Sigma-Aldrich Antibodies for MCC
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    Antibodies from Abcam (MCC), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (MCC)
    Novus Biologicals Antibodies for MCC

    Assays for MCC: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR019536 USH1C-bd_PDZ_domain


       GeneDecks  MCC for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P23508

    ProtoNet protein and cluster: P23508

    UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508
    Similarity: Belongs to the MCC family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (MCC)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (MCC)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_002387

                  Applied Biosystems Silencer® siRNAs for MCC

                  Sigma-Aldrich siRNA for MCC  
                         Sigma-Aldrich shRNA Panels and shRNA for MCC  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for MCC
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001085377
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001085377
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_001085377 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001085377

    UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508
    Function: Candidate for the putative colorectal tumor suppressor gene located at 5q21

    Genatlas biochemistry entry for MCC:
    mutated in colorectal cancer (see TSG5A)

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872 receptor activity TAS1848370
    GO:0005515 protein binding IPI14743216 17353931
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  MCC 


    5/35 Interacting proteins for MCC (P235081, 2) via UniProtKB, MINT, and/or STRING (see all 35 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NFKBIBQ156531, 2EBI-307531, EBI-352889 MINT-47859 EBI-307531, EBI-352889 MINT-47859
    CBR1P161521EBI-307531, EBI-351348
    CCNA1P783961EBI-307531, EBI-375065
    CLTCQ006101EBI-307531, EBI-354967
    CSNK1DP487301EBI-307531, EBI-751621
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165 signal transduction TAS1848370
    GO:0045786 negative regulation of cell cycle IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for MCC

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (MCC)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (MCC)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_002387

                  Sigma-Aldrich siRNA for MCC  
                         Sigma-Aldrich shRNA Panels and shRNA for MCC  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001085377  NM_002387  

    REFSEQ mRNAs for MCC gene (2 alternative transcripts): 

    NM_001085377.1   NM_002387.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001085377  NM_002387  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001085377
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001085377
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_001085377 

    Additional cDNA sequence: 

    AK096212.1 AK128596.1 AK300259.1 AL359558.1 BC009279.2 BC018919.2 BC043431.2 BX537952.1 
    BX647710.1 CR749713.1 M62397.1 

    12 DOTS entries:

    DT.441438  DT.439205  DT.206787  DT.99936084  DT.437378  DT.101982227  DT.120847212  DT.40210745 
    DT.92419764  DT.92426124  DT.120847111  DT.100800143 

    24/155 AceView cDNA sequences (see all 155 ):

    CA337225 AV661084 BM313537 CF890841 CB305455 CD515997 AW169982 AA018666 
    BM665160 BM666451 BQ188031 AK096212 BX445883 N29051 BQ423407 BM695282 
    AL706228 AI031639 AK128596 N85260 BV202211 BU189477 BC009279 AV645733 

    highest scoring ESTs for MCC:

    AA587459 BC009279 BC018919 BF203829 BF308292 BX647710 M62397 AA053723 AA317497 AI025592 

    Unigene Cluster for MCC:

    Mutated in colorectal cancers
    Hs.593171  [show with all ESTs]
    Unigene Representative Sequence: NM_001085377


    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for MCC

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b
    SP1:                                                  -                                                                                 
    SP2:              -                                   -                                                                                 
    SP3:              -     -                             -                                                                                 
    SP4:                                                                                                                                    

    About this scheme

    ECgene alternative splicing isoforms for MCC

    2 Ensembl transcripts including schematic representations:
    ENST00000302475  ENST00000408903  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    MCC expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for MCC

    1 / 2 / 3

    12 probe-sets matching MCC gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    1832_at2, 3 U95-A 1 1.00 1.00 0.02 0.69 M62397 0.80 1.00 0.91 1
    74146_at2, 3 U95-D 1 1.00 1.00 0.78 1.11 AA587459 0.80 1.00 0.91 1
    49504_r_at2, 3 U95-B 1 1.00 1.00 0.98 0.95 AI379607 0.60 1.00 0.82 1
    73437_at2, 3 U95-E 1 1.00 1.00 0.92 1.31 AI025592 0.60 1.00 0.82 1
    49502_i_at2, 3 U95-B 1 1.00 1.00 0.95 1.20 AI379607 0.60 1.00 0.82 1

    35561_at2, 3 U95-A 1 0.88 1.00 0.40 0.15 M62397 0.80 1.00 0.91 1

    49506_at2, 3 U95-B 1 0.81 1.00 0.88 1.00 AA053723 0.60 1.00 0.82 1

    52730_at*2, 3 U95-C 1 -- -- -0.35 0.78 N26089 0.20 1.00 0.72 1

    206132_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002387 0.60 1.00 0.82 1

    226225_at2 U133-B 1 1.00 1.00 -- -- -- -- -- -- --

    206132_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    226225_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  MCC for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TGACTAAGTT

    SOURCE GeneReport for Unigene cluster: Hs.593171

    Expression variation in blood from EXPOLDB for MCC

    UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508
    Tissue specificity: Expressed in a variety of tissues

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for MCC gene from 5/8 species (see all 8 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    MCC1   -- mutated in colorectal cancers 91.48(n)
    97.9(a)
    611208  XM_848846.1  XP_853939.1 
    chimpanzee
    (Pan troglodytes)
    MCC1   -- mutated in colorectal cancers 99.15(n)
    99.61(a)
    462002  XM_517879.2  XP_517879.2 
    cow
    (Bos taurus)
    MCC1   -- mutated in colorectal cancers 90.23(n)
    95.49(a)
    784835  XM_001253034.1  XP_001253035.1 
    rat
    (Rattus norvegicus)
    RGD15619881   -- similar to Colorectal mutant cancer protein (MCC protein) 87.19(n)
    94.21(a)
    307449  XM_225962.4  XP_225962.4 
    mouse
    (Mus musculus)
    Mcc5 18 (21.00 cM) mutated in colorectal cancers   -- C86509 
    About this table        Species with no ortholog for MCC

    ENSEMBL Gene Tree for MCC
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for MCC gene
    USHBP12  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/2985 NCBI SNPs in MCC are shown (see all 2985 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 717)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 5 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs14222221,2
    A,C,F,H,O112387978(-) GTTGCG/AAGTGC 2 -- ut3116Minor allele frequency- A:0.14MN EA NA EU WA 2714
    rs21124521,2
    A,C,F,H,O112386392(-) GTCATT/CCATCT 2 -- ut31 ese37Minor allele frequency- C:0.19EU EA WA NA 554
    rs15491811,2
    A,C,F,H,O112390739(-) TGGGGT/CGACTG 2 -- ut31 ese312Minor allele frequency- C:0.45MN EU EA WA NA 1164
    --
    rs3489391,2
    A,C,F,H,O112852636(-) AGACTG/CTTCCC 1 -- ng317Minor allele frequency- C:0.11EU EA WA NA 562
    rs70331,2
    A,C,F,H112385821(-) TGTAAA/GATAGC 2 -- ut3111Minor allele frequency- G:0.27EU EA WA NA 980
    --
    rs3489381,2
    A,C,F,H112852931(-) taacaT/Gttgtt 1 -- ng318Minor allele frequency- G:0.29EU EA WA 840
    --
    rs3489371,2
    A,C,F,H112853576(-) gctctA/Gggggt 1 -- ng318Minor allele frequency- G:0.50EU EA WA 840
    rs91221,2
    A,C,F,H112386030(-) TATACA/GCTTGA 2 -- ut31 ese314Minor allele frequency- G:0.47MN NS NA EU EA WA 1026
    rs32098741,2
    C,F,H,O112386789(-) AACTTG/ATGGCC 2 -- ut31 ese312Minor allele frequency- A:0.15NS NA EU EA WA 660
    rs31857331,2
    C,F,H112386919(-) TCTTAG/TAGAGT 2 -- ut315Minor allele frequency- T:0.49MN EU EA WA 582
    About this table

    HapMap Linkage Disequilibrium images for MCC (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 159350

    UniProtKB/Swiss-Prot: CRCM_HUMAN, P23508

  • Is probably involved in early stages of colorectal neoplasia in both sporadic and familial
    tumors
  • 9 Novoseek disease relationships for MCC gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    familial adenomatous polyposis 76.79 4 1565631 (2), 1325652 (2)
    colorectal tumors 75.96 7 1848370 (2), 8626604 (2), 1651562 (1), 1682292 (1)
    colorectal cancer 53.37 5 1848370 (1), 1668888 (1), 1682292 (1), 1339098 (1) (see all 5)
    colorectal carcinoma 53.15 3 1682292 (2), 1325652 (1)
    nsclc 45.69 2 7812947 (1)
    colon cancer 34.59 4 1565631 (2), 1314630 (1), 11311560 (1)
    tumors 27.00 10 11311560 (2), 7796415 (1), 8226275 (1), 7812947 (1) (see all 8)
    cancer lung 23.18 2 1565631 (1), 1348017 (1)
    cancer 4.80 2 1565631 (2)
    About this table

    Tumor Gene Database: MCC
    Breast Cancer Gene Database: MCC

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/35 PubMed articles for MCC gene (see all 35 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 4163 HGNC: 6935 AceView: MCC Ensembl:ENSG00000171444 euGenes: HUgn4163
    ECgene: MCC H-InvDB: MCC
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for MCC Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for MCC:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for MCC Antibodies for MCC
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