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Aliases for MATN1-AS1 Gene

Subcategory (RNA class) for MATN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MATN1-AS1 Gene

  • MATN1 Antisense RNA 1 2 3 5
  • MATN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MATN1-AS1 Gene

Previous GeneCards Identifiers for MATN1-AS1 Gene

  • GC01P031193

Summaries for MATN1-AS1 Gene

GeneCards Summary for MATN1-AS1 Gene

MATN1-AS1 (MATN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MATN1-AS1 Gene

Genomics for MATN1-AS1 Gene

Regulatory Elements for MATN1-AS1 Gene

Enhancers for MATN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G030768 1.7 FANTOM5 ENCODE dbSUPER 23.1 +50.6 50641 2.3 HDGF PKNOX1 CREB3L1 ARNT SIN3A YBX1 ZNF766 CBX5 FOS KLF13 MATN1-AS1 SNRNP40 MATN1 LOC105378626 LAPTM5 LOC105378621
GH01G030737 2 FANTOM5 Ensembl ENCODE dbSUPER 12.8 +32.8 32764 28.0 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ZFP64 SIN3A FEZF1 YY1 ZNF766 SNRNP40 LAPTM5 ENSG00000229447 LOC105378626 MATN1 MATN1-AS1 SDC3 PUM1 LOC105378620 MIR4420
GH01G030777 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +60.2 60191 2.9 HDGF PKNOX1 CREB3L1 ARNT ZNF766 CBX5 ZNF143 ZNF207 FOS KLF13 SNRNP40 MATN1-AS1 LAPTM5 SDC3 LOC105378621
GH01G030765 1.6 FANTOM5 ENCODE dbSUPER 12.7 +47.7 47700 0.6 HDGF ZNF133 ZNF766 GLIS2 ZNF143 KLF7 SP3 YY2 ZNF488 ZNF592 MATN1 MATN1-AS1 LAPTM5 LOC105378621
GH01G030808 1.5 Ensembl ENCODE dbSUPER 11.5 +91.1 91144 3.2 HDGF PKNOX1 ATF1 CREB3L1 SIN3A FEZF1 GATA2 FOS ZNF263 PAF1 SDC3 LOC400748 MATN1 MATN1-AS1 ENSG00000229607 GC01P030805
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MATN1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for MATN1-AS1 Gene

30,718,504 bp from pter
30,726,827 bp from pter
8,324 bases
Plus strand

Genomic View for MATN1-AS1 Gene

Genes around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MATN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MATN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MATN1-AS1 Gene

Proteins for MATN1-AS1 Gene

Post-translational modifications for MATN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MATN1-AS1 Gene

Domains & Families for MATN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MATN1-AS1 Gene

Function for MATN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MATN1-AS1 Gene

Localization for MATN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MATN1-AS1 Gene

Pathways & Interactions for MATN1-AS1 Gene

SuperPathways for MATN1-AS1 Gene

No Data Available

Interacting Proteins for MATN1-AS1 Gene

Gene Ontology (GO) - Biological Process for MATN1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MATN1-AS1 Gene

Drugs & Compounds for MATN1-AS1 Gene

No Compound Related Data Available

Transcripts for MATN1-AS1 Gene

mRNA/cDNA for MATN1-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MATN1-AS1 Gene

MATN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MATN1-AS1 Gene

No ASD Table

Relevant External Links for MATN1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MATN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MATN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for MATN1-AS1 Gene:

genes like me logo Genes that share expression patterns with MATN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MATN1-AS1 Gene

Orthologs for MATN1-AS1 Gene

Evolution for MATN1-AS1 Gene

Gene Tree for MATN1-AS1 (if available)
Gene Tree for MATN1-AS1 (if available)

No data available for Orthologs for MATN1-AS1 Gene

Paralogs for MATN1-AS1 Gene

No data available for Paralogs for MATN1-AS1 Gene

Variants for MATN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MATN1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000109348 -- 30,720,489(+) AGCAA(C/G)TTGCT intron-variant
rs1000978765 -- 30,719,249(+) GCCTT(C/T)CCCTC intron-variant, nc-transcript-variant
rs1001180956 -- 30,717,542(+) CATGT(A/G)TAGGT intron-variant, upstream-variant-2KB
rs1001262870 -- 30,717,247(+) ACAGC(A/T)CCTAT intron-variant, upstream-variant-2KB
rs1001285891 -- 30,725,157(+) GTTAC(C/T)CATTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MATN1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv145n100 CNV gain 25217958
nsv460995 CNV gain 19166990
nsv509124 CNV insertion 20534489
nsv545947 CNV gain 21841781

Relevant External Links for MATN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MATN1-AS1 Gene

Disorders for MATN1-AS1 Gene

Relevant External Links for MATN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MATN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MATN1-AS1 Gene

Publications for MATN1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MATN1-AS1 Gene

Sources for MATN1-AS1 Gene

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