Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MATN1-AS1 Gene

Subcategory (RNA class) for MATN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MATN1-AS1 Gene

  • MATN1 Antisense RNA 1 2 3 5
  • MATN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MATN1-AS1 Gene

Previous GeneCards Identifiers for MATN1-AS1 Gene

  • GC01P031193

Summaries for MATN1-AS1 Gene

GeneCards Summary for MATN1-AS1 Gene

MATN1-AS1 (MATN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MATN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MATN1-AS1 Gene

Genomics for MATN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for MATN1-AS1 Gene

Promoters and enhancers for MATN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I030718 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 556.6 +0.2 200 2.8 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC30A9 POLR2B MATN1-AS1 SNRNP40 GC01P030723 MATN1
GH01I030720 Enhancer 0.9 ENCODE dbSUPER 550.8 +1.9 1865 0.2 HDAC1 BCOR HDGF ZMYM3 PYGO2 PHF20 ADNP SMARCA5 GATAD2A SMAD5 MATN1-AS1 GC01P030723 MATN1
GH01I030717 Enhancer 0.6 ENCODE dbSUPER 550.8 -1.3 -1295 0.2 ADNP ZNF83 MATN1-AS1 PIR45107 MATN1
GH01I030737 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.8 +32.8 32764 28 HDGF PKNOX1 SMAD1 ARNT IRF4 YY1 ZNF766 CBX5 ZNF302 ZNF416 LAPTM5 LOC105378620 SNRNP40 ENSG00000229447 MATN1 MATN1-AS1 PUM1 SDC3 GC01P030755 MIR4420
GH01I030768 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 23.1 +50.6 50640 2.3 HDGF PKNOX1 SMAD1 FOXA2 ARNT YBX1 POLR2B ZNF766 CBX5 E2F8 SNRNP40 MATN1-AS1 ENSG00000229447 MATN1 PUM1 LAPTM5 LOC105378621
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MATN1-AS1 Gene

Genomic Locations for MATN1-AS1 Gene
chr1:30,718,504-30,726,827
(GRCh38/hg38)
Size:
8,324 bases
Orientation:
Plus strand
chr1:31,191,351-31,199,674
(GRCh37/hg19)

Genomic View for MATN1-AS1 Gene

Genes around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MATN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MATN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MATN1-AS1 Gene

Proteins for MATN1-AS1 Gene

Post-translational modifications for MATN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MATN1-AS1 Gene

Domains & Families for MATN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MATN1-AS1 Gene

Function for MATN1-AS1 Gene

Phenotypes From GWAS Catalog for MATN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MATN1-AS1 Gene

Localization for MATN1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MATN1-AS1 gene
Compartment Confidence
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MATN1-AS1 Gene

Pathways & Interactions for MATN1-AS1 Gene

SuperPathways for MATN1-AS1 Gene

No Data Available

Interacting Proteins for MATN1-AS1 Gene

Gene Ontology (GO) - Biological Process for MATN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MATN1-AS1 Gene

Drugs & Compounds for MATN1-AS1 Gene

No Compound Related Data Available

Transcripts for MATN1-AS1 Gene

mRNA/cDNA for MATN1-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MATN1-AS1 Gene

MATN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MATN1-AS1 Gene

No ASD Table

Relevant External Links for MATN1-AS1 Gene

GeneLoc Exon Structure for
MATN1-AS1
ECgene alternative splicing isoforms for
MATN1-AS1

Expression for MATN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MATN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for MATN1-AS1 Gene:

Hs.659751
genes like me logo Genes that share expression patterns with MATN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MATN1-AS1 Gene

Orthologs for MATN1-AS1 Gene

Evolution for MATN1-AS1 Gene

ENSEMBL:
Gene Tree for MATN1-AS1 (if available)
TreeFam:
Gene Tree for MATN1-AS1 (if available)

No data available for Orthologs for MATN1-AS1 Gene

Paralogs for MATN1-AS1 Gene

No data available for Paralogs for MATN1-AS1 Gene

Variants for MATN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MATN1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000109348 -- 30,720,489(+) G/C intron_variant
rs1000978765 -- 30,719,249(+) C/T non_coding_transcript_variant
rs1001180956 -- 30,717,542(+) G/A upstream_transcript_variant
rs1001262870 -- 30,717,247(+) A/T upstream_transcript_variant
rs1001285891 -- 30,725,157(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MATN1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv145n100 CNV gain 25217958
nsv460995 CNV gain 19166990
nsv509124 CNV insertion 20534489
nsv545947 CNV gain 21841781

Additional Variant Information for MATN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MATN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MATN1-AS1 Gene

Disorders for MATN1-AS1 Gene

Additional Disease Information for MATN1-AS1

No disorders were found for MATN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MATN1-AS1 Gene

Publications for MATN1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MATN1-AS1 Gene

Sources for MATN1-AS1 Gene

Content
Loading form....