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Aliases for MATN1-AS1 Gene

Subcategory (RNA class) for MATN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MATN1-AS1 Gene

  • MATN1 Antisense RNA 1 2 3 5
  • MATN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MATN1-AS1 Gene

Previous GeneCards Identifiers for MATN1-AS1 Gene

  • GC01P031193

Summaries for MATN1-AS1 Gene

GeneCards Summary for MATN1-AS1 Gene

MATN1-AS1 (MATN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MATN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MATN1-AS1 Gene

Genomics for MATN1-AS1 Gene

Regulatory Elements for MATN1-AS1 Gene

Enhancers for MATN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H030768 1.7 FANTOM5 ENCODE dbSUPER 23.1 +50.6 50641 2 HDGF PKNOX1 ARNT YBX1 ZNF766 CBX5 FOS REST SMARCB1 ZNF592 SNRNP40 MATN1-AS1 ENSG00000229447 MATN1 PUM1 LAPTM5 LOC105378621
GH01H030737 2 FANTOM5 Ensembl ENCODE dbSUPER 12.8 +32.8 32764 27 HDGF PKNOX1 ARNT SIN3A YY1 ZNF766 CBX5 ZNF302 ZNF416 ZNF143 SNRNP40 ENSG00000229447 LAPTM5 LOC400748 ENSG00000236335 MATN1 MATN1-AS1 PUM1 SDC3 LOC105378620
GH01H030777 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +60.2 60191 2 HDGF PKNOX1 ARNT ZNF766 CBX5 ZNF143 ZNF207 FOS DEK REST SNRNP40 MATN1-AS1 LAPTM5 SDC3 LOC105378621
GH01H030765 1.5 FANTOM5 ENCODE dbSUPER 12.7 +47.7 47700 0 HDGF PTBP1 NFRKB ZNF766 EGR1 ZNF143 RUNX3 CREM SMARCA5 CBFB MATN1 MATN1-AS1 PUM1 SNRNP40 ENSG00000229447 LAPTM5 LOC105378621
GH01H030801 1.5 Ensembl ENCODE dbSUPER 11.3 +83.4 83407 0 ATF1 GLIS2 CBX5 ZNF143 ATF7 YY2 TSHZ1 REST ZNF662 ZNF623 ENSG00000229447 SNRNP40 PUM1 LOC105378626 SDC3 LAPTM5 LOC400748 MATN1 MATN1-AS1 ADGRB2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MATN1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000004072 -3 1800 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC30A9 ZNF766

Genomic Location for MATN1-AS1 Gene

Chromosome:
1
Start:
30,718,504 bp from pter
End:
30,726,827 bp from pter
Size:
8,324 bases
Orientation:
Plus strand

Genomic View for MATN1-AS1 Gene

Genes around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MATN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MATN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MATN1-AS1 Gene

Proteins for MATN1-AS1 Gene

Post-translational modifications for MATN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MATN1-AS1 Gene

Domains & Families for MATN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MATN1-AS1 Gene

Function for MATN1-AS1 Gene

Phenotypes From GWAS Catalog for MATN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MATN1-AS1 Gene

Localization for MATN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MATN1-AS1 Gene

Pathways & Interactions for MATN1-AS1 Gene

SuperPathways for MATN1-AS1 Gene

No Data Available

Interacting Proteins for MATN1-AS1 Gene

Gene Ontology (GO) - Biological Process for MATN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MATN1-AS1 Gene

Drugs & Compounds for MATN1-AS1 Gene

No Compound Related Data Available

Transcripts for MATN1-AS1 Gene

mRNA/cDNA for MATN1-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MATN1-AS1 Gene

MATN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MATN1-AS1 Gene

No ASD Table

Relevant External Links for MATN1-AS1 Gene

GeneLoc Exon Structure for
MATN1-AS1
ECgene alternative splicing isoforms for
MATN1-AS1

Expression for MATN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MATN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for MATN1-AS1 Gene:

Hs.659751
genes like me logo Genes that share expression patterns with MATN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MATN1-AS1 Gene

Orthologs for MATN1-AS1 Gene

Evolution for MATN1-AS1 Gene

ENSEMBL:
Gene Tree for MATN1-AS1 (if available)
TreeFam:
Gene Tree for MATN1-AS1 (if available)

No data available for Orthologs for MATN1-AS1 Gene

Paralogs for MATN1-AS1 Gene

No data available for Paralogs for MATN1-AS1 Gene

Variants for MATN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MATN1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000109348 -- 30,720,489(+) AGCAA(C/G)TTGCT intron-variant
rs1000978765 -- 30,719,249(+) GCCTT(C/T)CCCTC intron-variant, nc-transcript-variant
rs1001180956 -- 30,717,542(+) CATGT(A/G)TAGGT intron-variant, upstream-variant-2KB
rs1001262870 -- 30,717,247(+) ACAGC(A/T)CCTAT intron-variant, upstream-variant-2KB
rs1001285891 -- 30,725,157(+) GTTAC(C/T)CATTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MATN1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv145n100 CNV gain 25217958
nsv460995 CNV gain 19166990
nsv509124 CNV insertion 20534489
nsv545947 CNV gain 21841781

Relevant External Links for MATN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MATN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MATN1-AS1 Gene

Disorders for MATN1-AS1 Gene

Relevant External Links for MATN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MATN1-AS1

No disorders were found for MATN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MATN1-AS1 Gene

Publications for MATN1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for MATN1-AS1 Gene

Sources for MATN1-AS1 Gene

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