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Aliases for MATN1-AS1 Gene

Subcategory (RNA class) for MATN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MATN1-AS1 Gene

  • MATN1 Antisense RNA 1 2 3 5
  • MATN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MATN1-AS1 Gene

Previous GeneCards Identifiers for MATN1-AS1 Gene

  • GC01P031193

Summaries for MATN1-AS1 Gene

GeneCards Summary for MATN1-AS1 Gene

MATN1-AS1 (MATN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MATN1-AS1 Gene

Genomics for MATN1-AS1 Gene

Regulatory Elements for MATN1-AS1 Gene

Enhancers for MATN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F030767 1.7 FANTOM5 Ensembl ENCODE 23.1 +50.6 50641 2.3 HDGF PKNOX1 ARNT CREB3L1 SIN3A YBX1 FOS KLF13 JUNB REST MATN1-AS1 SNRNP40 MATN1 LOC105378626 LAPTM5 LOC105378621
GH01F030765 1.6 FANTOM5 Ensembl ENCODE 12.7 +47.7 47659 0.7 HDGF ZNF133 GLIS2 ZNF143 KLF7 SP3 YY2 ZNF488 CREB3 GLIS1 MATN1 MATN1-AS1 LAPTM5 LOC105378621
GH01F030737 1.5 FANTOM5 ENCODE 12.7 +32.8 32764 28.0 HDGF PKNOX1 ARNT WRNIP1 ZFP64 SIN3A FEZF1 YY1 ZNF302 ZNF416 SNRNP40 LAPTM5 ENSG00000229447 LOC400748 ENSG00000236335 LOC105378626 MATN1 MATN1-AS1 SDC3 PUM1
GH01F030777 1.6 FANTOM5 Ensembl ENCODE 10.7 +60.6 60622 3.8 HDGF PKNOX1 ARNT CREB3L1 CBX5 ZNF143 ZNF207 FOS KLF13 JUNB SNRNP40 MATN1-AS1 LAPTM5 SDC3 LOC105378621
GH01F030929 1.4 FANTOM5 Ensembl ENCODE 10.9 +210.9 210898 0.8 HDGF PKNOX1 WRNIP1 ZNF2 RAD21 RARA SCRT2 ZNF143 SMARCA5 ZNF654 MATN1 MATN1-AS1 GC01M030941 GC01M030942 PIR48625 RN7SL371P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MATN1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000533742 96 2001 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143

Genomic Location for MATN1-AS1 Gene

Chromosome:
1
Start:
30,718,504 bp from pter
End:
30,726,827 bp from pter
Size:
8,324 bases
Orientation:
Plus strand

Genomic View for MATN1-AS1 Gene

Genes around MATN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MATN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MATN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MATN1-AS1 Gene

Proteins for MATN1-AS1 Gene

Post-translational modifications for MATN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MATN1-AS1 Gene

Domains & Families for MATN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MATN1-AS1 Gene

Function for MATN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MATN1-AS1 Gene

Localization for MATN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MATN1-AS1 Gene

Pathways & Interactions for MATN1-AS1 Gene

SuperPathways for MATN1-AS1 Gene

No Data Available

Interacting Proteins for MATN1-AS1 Gene

Gene Ontology (GO) - Biological Process for MATN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MATN1-AS1 Gene

Transcripts for MATN1-AS1 Gene

mRNA/cDNA for MATN1-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MATN1-AS1 Gene

MATN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MATN1-AS1 Gene

No ASD Table

Relevant External Links for MATN1-AS1 Gene

GeneLoc Exon Structure for
MATN1-AS1
ECgene alternative splicing isoforms for
MATN1-AS1

Expression for MATN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MATN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for MATN1-AS1 Gene:

Hs.659751
genes like me logo Genes that share expression patterns with MATN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MATN1-AS1 Gene

Orthologs for MATN1-AS1 Gene

Evolution for MATN1-AS1 Gene

ENSEMBL:
Gene Tree for MATN1-AS1 (if available)
TreeFam:
Gene Tree for MATN1-AS1 (if available)

No data available for Orthologs for MATN1-AS1 Gene

Paralogs for MATN1-AS1 Gene

No data available for Paralogs for MATN1-AS1 Gene

Variants for MATN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MATN1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10553997 -- 30,720,099(+) GTGAC(-/TA)TTCGC intron-variant
rs10665962 -- 30,727,123(+) TTTTT(-/TT)AGGAT downstream-variant-500B
rs10914186 -- 30,718,669(+) gccct(C/G)gcccc intron-variant, upstream-variant-2KB
rs112223415 -- 30,724,100(+) GGCCT(C/T)CAGGC intron-variant, upstream-variant-2KB
rs112514621 -- 30,721,785(+) GAGAG(C/T)AGAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MATN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv545947 CNV gain 21841781
nsv509124 CNV insertion 20534489
nsv460995 CNV gain 19166990
dgv145n100 CNV gain 25217958

Relevant External Links for MATN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MATN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MATN1-AS1 Gene

Disorders for MATN1-AS1 Gene

Relevant External Links for MATN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MATN1-AS1

No disorders were found for MATN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MATN1-AS1 Gene

Publications for MATN1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MATN1-AS1 Gene

Sources for MATN1-AS1 Gene

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