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MARVELD1 Gene

protein-coding   GIFtS: 37
GCID: GC10P099464

MARVEL Domain Containing 1

(Previous name: MARVEL (membrane-associating) domain containing 1)
(Previous symbol: MRVLDC1)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
MARVEL Domain Containing 11 2     MARVD12
MRVLDC11 2 3     bA548K23.82
MARVEL (Membrane-Associating) Domain Containing 11 2     MARVEL Domain-Containing Protein 12
GB142     Putative MARVEL Domain-Containing Protein 12

External Ids:    HGNC: 286741   Entrez Gene: 837422   Ensembl: ENSG000001552547   UniProtKB: Q9BSK03   
ORGUL members:         

Export aliases for MARVELD1 gene to outside databases

Previous GC identifer: GC10P093098


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for MARVELD1 Gene:
MARVELD1 (MARVEL domain containing 1) is a protein-coding gene. Diseases associated with MARVELD1 include hepatocellular carcinoma.

UniProtKB/Swiss-Prot: MALD1_HUMAN, Q9BSK0
Function: Microtubule-associated protein that exhibits cell cycle-dependent localization and can inhibit cell
proliferation and migration (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the MARVELD1 gene promoter:
         RFX1   Egr-1   MIF-1   Tal-1beta   HEN1   Max   MZF-1   GCNF-2   ITF-2   c-Myc   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MARVELD1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MARVELD1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q24.2   Ensembl cytogenetic band:  10q24.2   HGNC cytogenetic band: 10q24.2

MARVELD1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MARVELD1 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P099464:  view genomic region     (about GC identifiers)

Start:
99,472,930 bp from pter      End:
99,477,909 bp from pter
Size:
4,980 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MALD1_HUMAN, Q9BSK0 (See protein sequence)
Recommended Name: MARVEL domain-containing protein 1  
Size: 173 amino acids; 18914 Da
Miscellaneous: Down-regulated in primary multiple tumors derived from ovary, vulva, uterus, cervix, breast,
testis, kidney bladder and liver. The reduced expression is owing to DNA methylation and could be reversed by
pharmacologic demethylation (PubMed:19364627)

Explore the universe of human proteins at neXtProt for MARVELD1: NX_Q9BSK0

Explore proteomics data for MARVELD1 at MOPED


See MARVELD1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_113672.1  
ENSEMBL proteins: 
 ENSP00000441365  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR008253 Marvel

Graphical View of Domain Structure for InterPro Entry Q9BSK0

ProtoNet protein and cluster: Q9BSK0

2 Blocks protein domains:
IPB000408 Regulator of chromosome condensation
IPB008253 Marvel


UniProtKB/Swiss-Prot: MALD1_HUMAN, Q9BSK0
Similarity: Contains 1 MARVEL domain


MARVELD1 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: MALD1_HUMAN, Q9BSK0
Function: Microtubule-associated protein that exhibits cell cycle-dependent localization and can inhibit cell
proliferation and migration (By similarity)

Phenotypes:
     1 GenomeRNAi human phenotype for MARVELD1:

 Decreased cell number 

Animal Models:
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hsa-miR-485-5p hsa-miR-3194-5p hsa-miR-218-1* hsa-miR-548v hsa-miR-124 hsa-miR-9 hsa-miR-3122 hsa-miR-637
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
MALD1_HUMAN, Q9BSK0: Cell membrane; Multi-pass membrane protein (By similarity). Cytoplasm, cytoskeleton (By
similarity). Nucleus. Note=Observed in the nucleus and at the perinuclear region during interphase, but localizes
at the mitotic spindle and midbody at metaphase. A significant fraction of MARVELD1 translocates to the plasma
membrane during anaphase or upon microtubule depolymerization (By similarity)

Gene Ontology (GO): Selected cellular component terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--
GO:0005737cytoplasm IEA--
GO:0005856cytoskeleton IEA--
GO:0005886plasma membrane IEA--
GO:0016020membrane ----

MARVELD1 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MARVELD1
Interactions:

    Search GeneGlobe Interaction Network for MARVELD1

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007049cell cycle IEA--

MARVELD1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for MARVELD1 (MALD1)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for MARVELD1 gene: 
NM_031484.3  

4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000451097 ENST00000434038 ENST00000285605(uc001koj.4) ENST00000421644

miRNA
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Selected qRT-PCR Assays for microRNAs that regulate MARVELD1 (see all 25):
hsa-miR-485-5p hsa-miR-3194-5p hsa-miR-218-1* hsa-miR-548v hsa-miR-124 hsa-miR-9 hsa-miR-3122 hsa-miR-637
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat MARVELD1
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OriGene ORF clones in mouse, rat for MARVELD1
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GenScript: all cDNA clones in your preferred vector: MARVELD1 (NM_031484)
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Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MARVELD1
Primer
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  QuantiFast Probe-based Assays in human, mouse, rat MARVELD1

Selected AceView cDNA sequences (see all 270):

BG325189 BM982041 BM857647 BU789782 BC062544 BF446195 BU753022 AI244268 
BX090352 BM564996 W57786 AI002605 BU845149 BU844661 BE273183 BM971765 
AW419078 CD679436 BU178922 BM788130 BU617019 W81344 BQ685706 BQ685699 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for MARVELD1    About this scheme

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b
SP1:        -                                 
SP2:                    -                     
SP3:                                          


ECgene alternative splicing isoforms for MARVELD1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MARVELD1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAGCCTCATC
MARVELD1 Expression
About this image


MARVELD1 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Neural Crest (Gastrulation Derivatives)
         Cranial Neural Crest Cells Branchial Arch 1
 
 Head Mesenchyme (Muscoskeletal System)
         Cranial Neural Crest Cells Branchial Arch 1
MARVELD1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MARVELD1 Protein Expression

UniProtKB/Swiss-Prot: MALD1_HUMAN, Q9BSK0
Tissue specificity: Widely expressed in normal tissues. Down-regulated in multiple primary tumors

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QuantiFast Probe-based Assays in human, mouse, rat MARVELD1
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MARVELD1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MARVELD1 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Marveld11 , 5 MARVEL (membrane-associating) domain containing 11, 5 90.89(n)1
88.95(a)1
  19 (35.84 cM)5
2770101  NM_183195.21  NP_899018.11 
 421474005 
chicken
(Gallus gallus)
Aves MARVELD11 MARVEL domain containing 1 66.41(n)
55.73(a)
  100858221  XM_004942388.1  XP_004942445.1 
lizard
(Anolis carolinensis)
Reptilia MARVELD16
MARVEL domain containing 1
50(a)
1 ↔ 1
3(39161491-39162018)
tropical clawed frog
(Xenopus tropicalis)
Amphibia marveld11 MARVEL domain containing 1 56.99(n)
49.03(a)
  100379963  XM_002936434.2  XP_002936480.1 
zebrafish
(Danio rerio)
Actinopterygii marveld11 MARVEL domain containing 1 60.59(n)
49.32(a)
  497317  NM_001202417.1  NP_001189346.1 


ENSEMBL Gene Tree for MARVELD1 (if available)
TreeFam Gene Tree for MARVELD1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MARVELD1 (see all 113)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 10 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs2010205531,2
C--99471492(+) CTCTA-/TTTTTT 1 -- us2k10--------
rs1812550321,2
--99471515(+) CAGAGC/TCTTCT 1 -- us2k10--------
rs1147238641,2
F--99471654(+) ATGACC/AGGGAG 1 -- us2k11Minor allele frequency- A:0.01WA 118
rs1866646441,2
--99471655(+) TGACCA/GGGAGA 1 -- us2k10--------
rs1907119551,2
--99471710(+) ATGCAA/CTGTCC 1 -- us2k10--------
rs1129803991,2
F--99471723(+) AGGGTG/AAGAGG 1 -- us2k11Minor allele frequency- A:0.50CSA 2
rs1407827951,2
--99471781(+) TCCACA/GTATTT 1 -- us2k10--------
rs755904571,2
C,F--99471939(+) AAGCAG/TCATTT 1 -- us2k11Minor allele frequency- T:0.06WA 118
rs65841481,2
C,F,A,H--99472221(+) TGACCC/TGGCTT 1 -- us2k124Minor allele frequency- T:0.47NS EA NA WA CSA 2357
rs764103681,2
F--99472253(+) CAGCAC/TTTTGG 1 -- us2k12Minor allele frequency- T:0.02WA NA 238

HapMap Linkage Disequilibrium report for MARVELD1 (99472930 - 99477909 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for MARVELD1: --
Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing MARVELD1
DNA2.0 Custom Variant and Variant Library Synthesis for MARVELD1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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1 disease for MARVELD1:    
About MalaCards
hepatocellular carcinoma


MARVELD1 for disorders           About GeneDecksing


Export disorders for MARVELD1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MARVELD1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with MARVELD1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification and characterization of MARVELD1, a novel nuclear protein that is down-regulated in multiple cancers and silenced by DNA methylation. (PubMed id 19364627)1, 2 Wang S.... Wu H. (Cancer Lett. 2009)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (Nature 2004)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  5. Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-I+-acetylation features. (PubMed id 22223895)2 Bienvenut W.V....Giglione C. (amp 2012)
  6. MARVELD1 inhibited cell proliferation and enhance chemosensitivity via increasing expression of p53 and p16 in hepatocellular carcinoma. (PubMed id 22320884)1 Yu Y....Li Y. (Cancer Sci. 2012)
  7. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
  8. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (Genome Res. 1996)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 83742 HGNC: 28674 AceView: MARVELD1 Ensembl:ENSG00000155254 euGenes: HUgn83742
ECgene: MARVELD1 H-InvDB: MARVELD1

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MARVELD1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MARVELD1 gene:
Search GeneIP for patents involving MARVELD1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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