MARCH3 Gene
protein-coding GIFtS : 44
GCID: GC05 M126235
membrane-associated ring finger (C3HC4) 3, E3 ubiquitin... (Previous name: membrane-associated ring finger (C3HC4) 3 )
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Aliasesfor MARCH3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Membrane-Associated Ring Finger (C3HC4) 3, E3 Ubiquitin Protein Ligase 1 2 MGC483321 MARCH-III1 2 3 Membrane-Associated Ring Finger (C3HC4) 31 RNF1731 2 3 E3 Ubiquitin-Protein Ligase MARCH32 Membrane-Associated RING Finger Protein 32 3 EC 6.3.2.-3 Membrane-Associated RING-CH Protein III2 3 EC 6.3.28 RING Finger Protein 1732 3
Export aliases for MARCH3 gene to outside databases Previous GC identifer: GC05M121395
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Summariesfor MARCH3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for MARCH3 : MARCH3 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH proteins add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH3 appears to function in the endosomal recycling pathway (Fukuda et al., 2006 (PubMed 16428329)).(supplied by OMIM, Mar 2010) UniProtKB/Swiss-Prot: MARH3_HUMAN, Q86UD3 Function : E3 ubiquitin-protein ligase which may be involved in endosomal trafficking. E3 ubiquitin ligases acceptubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates (By similarity)
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Genomic Viewsfor MARCH3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000005.9 NC_018916.1 NT_034772.6 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MARCH3 gene promoter: HFH-3 GATA-3 IRF-1 E47 GATA-2 GATA-1 MZF-1 FOXI1 FOXO1a FOXO1 Other transcription factors Search SABiosciences Chromatin IP Primers for MARCH3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MARCH3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q23.2 Ensembl cytogenetic band: 5q23.2 HGNC cytogenetic band: 5q23.2 MARCH3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M126235: view genomic region
(about GC identifiers )
Start:
126,203,406 bp from pter
End:
126,366,500 bp from pter
Size:
163,095 bases
Orientation:
minus strand
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Proteinsfor MARCH3 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: MARH3_HUMAN, Q86UD3 (See
protein sequence )Recommended Name: E3 ubiquitin-protein ligase MARCH3 Size : 253 amino acids; 28504 Da
Subunit : Interacts with MARCH2 and STX6 (By similarity)
Subcellular location : Cytoplasmic vesicle membrane; Multi-pass membrane protein. Early endosome membrane; Multi-passmembrane protein
Secondary accessions : A8K264Explore the universe of human proteins at neXtProt for MARCH3: NX_Q86UD3 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q86UD3 4/9 DME Specific Peptides for MARCH3 (Q86UD3 ) (see all 9 )MARCH3 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_848545.1 ENSEMBL proteins: ENSP00000309141 ENSP00000421979 Human Recombinant Protein Products: Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view) : About this table
MARCH3 for ontologies About GeneDecksing MARCH3 Antibody Products: Assay Products for MARCH3:
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Protein
Domains / Familiesfor MARCH3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MARCH3 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q86UD3 ProtoNet protein and cluster: Q86UD3
2 Blocks protein families : IPB001841 Zn-finger IPB011016 RINGv UniProtKB/Swiss-Prot: MARH3_HUMAN, Q86UD3 Domain : The RING-CH-type zinc finger domain is required for E3 ligase activity (By similarity)Similarity : Contains 1 RING-CH-type zinc finger
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Functionfor MARCH3 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: MARH3_HUMAN, Q86UD3 Function : E3 ubiquitin-protein ligase which may be involved in endosomal trafficking. E3 ubiquitin ligases acceptubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates (By similarity) Enzyme Numbers (IUBMB): EC 6.3.2.- 1 EC 6.3.2 2
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MARCH3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MARCH3OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript Custom all cDNA clones Services for MARCH3 Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MARCH3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MARCH3
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MARCH3
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008270 zinc ion binding
IEA -- GO:0016874 ligase activity
IEA --
MARCH3 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for MARCH3 :
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Pathways & Interactionsfor MARCH3 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section UniProtKB/Swiss-Prot: MARH3_HUMAN, Q86UD3 Pathway : Protein modification; protein ubiquitinationInteractions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MARCH3 STRING Interaction
Network Preview (showing 5 interactants - click image to see 7)5/8 Interacting proteins for MARCH3 (Q86UD3 3 ENSP00000309141 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 8 )
About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006897 endocytosis
IEA -- GO:0016567 protein ubiquitination
IEA --
MARCH3 for ontologies About GeneDecksing
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Drugs & Compoundsfor MARCH3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for MARCH3 4 HMDB Compounds for MARCH3 About this table Search CenterWatch for drugs/clinical trials and news about MARCH3 / MARH3
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Transcriptsfor MARCH3 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for MARCH3 gene: NM_178450.3 Unigene Cluster for MARCH3:
Membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase Hs.132441 [show with all ESTs ] Unigene Representative Sequence: NM_178450 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000308660 (uc003kuf.3 uc011cxc.1 ) ENST00000506088 ENST00000504239 ENST00000515241 ENST00000502289 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MARCH3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MARCH3OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript Custom all cDNA clones Services for MARCH3 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MARCH3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MARCH3
Additional cDNA sequence: AF055007.1 AK000103.1 AK290129.1 BC047569.1 BC146948.1 BC146964.1
7 DOTS entries : DT.312594 DT.311012
DT.97842964 DT.91749833 DT.99926902 DT.120883567 DT.120883621 24/85 AceView cDNA sequences (see all 85 ):
AI347342 BG200932 CA306167 BU735044 BQ014016 BQ641458 AI215020 AI918773 AI376818 BE408696 BF063553 BM790732 CA444753 AV707675 BM727738 BE514584 CD674715 BM682935 CK820969 AI203073 BM696411 AI492023 AW051764 BM931562 GeneLoc Exon Structure
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Expression for MARCH3 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section MARCH3 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTTATTTAGC
About this image MARCH3 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See MARCH3 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for MARCH3 SOURCE GeneReport for Unigene cluster: Hs.132441 SABiosciences Expression via Pathway-Focused PCR Array including MARCH3 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MARCH3Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat MARCH3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MARCH3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MARCH3 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MARCH3
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Orthologsfor MARCH3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for MARCH3 gene from 6/12 species (see all 12 ) About this table
ENSEMBL Gene Tree for MARCH3 (if available)TreeFam Gene Tree for MARCH3 (if available)
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Paralogsfor MARCH3 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for MARCH3 gene MARCH8 2 MARCH11 2 MARCH1 2 MARCH4 2 MARCH2 2 MARCH9 2 4 SIMAP similar genes for MARCH3 using alignment to 2 protein entries: MARH3_HUMAN (see all proteins ):MARCH2 MARCH1 MARCH6 MARCH8
MARCH3 for paralogs About GeneDecksing
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Genomic Variantsfor MARCH3 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 5 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for MARCH3 (126203406 - 126366500 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for MARCH3: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MARCH3
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Disorders
/ Diseasesfor MARCH3 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
MARCH3 for disorders About MalaCards
MARCH3 for disorders About GeneDecksing
OMIM gene information: 613333
OMIM disorders : --Export disorders for MARCH3 gene to outside databases
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Publicationsfor MARCH3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for MARCH3 gene integrated from 9 sources : (articles sorted by number of sources associating them with MARCH3) Utopia : connect your pdf to the dynamic world of online information
MARCH-III is a novel component of endosomes with properties similar to those of MARCH-II. (PubMed id 16428329) 1 , 2 Fukuda H.... Hirose S. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Downregulation of major histocompatibility complex class I by human ubiquitin ligases related to viral immune evasion proteins. (PubMed id 14722266) 1 , 3 Bartee E.... Frueh K. (2004) A "double adaptor" method for improved shotgun library construction. (PubMed id 8619474) 1 , 3 Andersson B.... Gibbs R.A. (1996) Systematic analysis of dimeric E3-RING interactions re veals increased combinatorial complexity in human ubiquitination networks. (PubMed id 22493164) 1 Woodsmith J....Sanderson C.M. (2012) Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049) 1 OlA!h J....OvA!di J. (2011) Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PubMed id 19549727) 1 Markson G....Sanderson C.M. (2009) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Large-scale concatenation cDNA sequencing. (PubMed id 9110174) 1 Yu W.... Gibbs R.A. (1997)
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External Searches for MARCH3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MARCH3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MARCH3 gene
(According to HUGE )
About This Section --
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Specialized Databases showing MARCH3 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for MARCH3 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for MARCH3 gene: Search GeneIP for patents involving MARCH3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MARCH3 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for MARCH3 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for MARCH3 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MARCH3 OriGene Protein Over-expression Lysate for MARCH3 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for MARCH3 OriGene 3'-UTR Clone for MARCH3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MARCH3 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MARCH3 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for MARCH3 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for MARCH3 OriGene Custom Protein Services for MARCH3 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MARCH3 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MARCH3 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MARCH3 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat MARCH3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MARCH3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MARCH3
Search Tocris compounds for MARCH3
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MARCH3
Search ThermoFisher Antibodies for MARCH3
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MARCH3
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