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Aliases for MAPT-IT1 Gene

Subcategory (RNA class) for MAPT-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MAPT-IT1 Gene

  • MAPT Intronic Transcript 1 2 3 5
  • MAPT Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MAPT-IT1 Gene

Previous GeneCards Identifiers for MAPT-IT1 Gene

  • GC17P043974
  • GC17P043976

Summaries for MAPT-IT1 Gene

GeneCards Summary for MAPT-IT1 Gene

MAPT-IT1 (MAPT Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAPT-IT1 Gene

Genomics for MAPT-IT1 Gene

Regulatory Elements for MAPT-IT1 Gene

Enhancers for MAPT-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F045903 1.1 Ensembl ENCODE 0.4 +7.4 7418 0.4 HDAC1 PKNOX1 TAL1 ZNF644 RAD21 TEAD3 YY1 SLC30A9 GATA3 NCOR1 CRHR1-IT1 LRRC37A2 ENSG00000262881 GC17P045896 MAPT-IT1
GH17F045900 0.7 ENCODE 0.4 +5.2 5173 1.6 YBX1 ZBTB40 ZNF217 ZNF664 E2F1 GATA3 CTBP1 JUND ZNF366 ZNF512 CRHR1-IT1 ENSG00000262881 GC17P045896 MAPT-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAPT-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAPT-IT1 Gene

45,895,783 bp from pter
45,898,798 bp from pter
3,016 bases
Plus strand

Genomic View for MAPT-IT1 Gene

Genes around MAPT-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAPT-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPT-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-IT1 Gene

Proteins for MAPT-IT1 Gene

Post-translational modifications for MAPT-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-IT1 Gene

Domains & Families for MAPT-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAPT-IT1 Gene

Function for MAPT-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPT-IT1 Gene

Localization for MAPT-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAPT-IT1 Gene

Pathways & Interactions for MAPT-IT1 Gene

SuperPathways for MAPT-IT1 Gene

No Data Available

Interacting Proteins for MAPT-IT1 Gene

Gene Ontology (GO) - Biological Process for MAPT-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MAPT-IT1 Gene

Transcripts for MAPT-IT1 Gene

mRNA/cDNA for MAPT-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAPT-IT1 Gene

MAPT intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-IT1 Gene

No ASD Table

Relevant External Links for MAPT-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MAPT-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAPT-IT1 Gene

mRNA expression in normal human tissues for MAPT-IT1 Gene

SOURCE GeneReport for Unigene cluster for MAPT-IT1 Gene:

genes like me logo Genes that share expression patterns with MAPT-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MAPT-IT1 Gene

Orthologs for MAPT-IT1 Gene

Evolution for MAPT-IT1 Gene

Gene Tree for MAPT-IT1 (if available)
Gene Tree for MAPT-IT1 (if available)

No data available for Orthologs for MAPT-IT1 Gene

Paralogs for MAPT-IT1 Gene

No data available for Paralogs for MAPT-IT1 Gene

Variants for MAPT-IT1 Gene

Sequence variations from dbSNP and Humsavar for MAPT-IT1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10593245 -- 45,895,091(+) GTGTG(-/TG)GAGGG intron-variant, upstream-variant-2KB
rs11079726 -- 45,898,869(+) GAAGC(A/G)GGTGG intron-variant
rs111665304 -- 45,896,980(+) GGTCG(C/T)CCAGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111752348 -- 45,896,978(+) CGGGT(-/CGC)CCAGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111782674 -- 45,895,938(+) ACTGG(A/G)GGCGT intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MAPT-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv3178n100 CNV gain 25217958
esv2762433 CNV gain+loss 21179565
nsv1146669 OTHER inversion 26484159

Relevant External Links for MAPT-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAPT-IT1 Gene

Disorders for MAPT-IT1 Gene

Relevant External Links for MAPT-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MAPT-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAPT-IT1 Gene

Publications for MAPT-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MAPT-IT1 Gene

Sources for MAPT-IT1 Gene

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