Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MAPT-IT1 Gene

Subcategory (RNA class) for MAPT-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAPT-IT1 Gene

  • MAPT Intronic Transcript 1 2 3 5
  • MAPT Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MAPT-IT1 Gene

Previous GeneCards Identifiers for MAPT-IT1 Gene

  • GC17P043974
  • GC17P043976

Summaries for MAPT-IT1 Gene

GeneCards Summary for MAPT-IT1 Gene

MAPT-IT1 (MAPT Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAPT-IT1 Gene

Genomics for MAPT-IT1 Gene

Regulatory Elements for MAPT-IT1 Gene

Enhancers for MAPT-IT1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MAPT-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAPT-IT1 Gene

Chromosome:
17
Start:
45,895,783 bp from pter
End:
45,898,798 bp from pter
Size:
3,016 bases
Orientation:
Plus strand

Genomic View for MAPT-IT1 Gene

Genes around MAPT-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAPT-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPT-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-IT1 Gene

Proteins for MAPT-IT1 Gene

Post-translational modifications for MAPT-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-IT1 Gene

Domains & Families for MAPT-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAPT-IT1 Gene

Function for MAPT-IT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPT-IT1 Gene

Localization for MAPT-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAPT-IT1 Gene

Pathways & Interactions for MAPT-IT1 Gene

SuperPathways for MAPT-IT1 Gene

No Data Available

Interacting Proteins for MAPT-IT1 Gene

Gene Ontology (GO) - Biological Process for MAPT-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAPT-IT1 Gene

Drugs & Compounds for MAPT-IT1 Gene

No Compound Related Data Available

Transcripts for MAPT-IT1 Gene

mRNA/cDNA for MAPT-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAPT-IT1 Gene

MAPT intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-IT1 Gene

No ASD Table

Relevant External Links for MAPT-IT1 Gene

GeneLoc Exon Structure for
MAPT-IT1
ECgene alternative splicing isoforms for
MAPT-IT1

Expression for MAPT-IT1 Gene

mRNA expression in normal human tissues for MAPT-IT1 Gene

mRNA expression in normal human tissues for MAPT-IT1 Gene

SOURCE GeneReport for Unigene cluster for MAPT-IT1 Gene Hs.669307

genes like me logo Genes that share expression patterns with MAPT-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MAPT-IT1 Gene

Orthologs for MAPT-IT1 Gene

Evolution for MAPT-IT1 Gene

ENSEMBL:
Gene Tree for MAPT-IT1 (if available)
TreeFam:
Gene Tree for MAPT-IT1 (if available)

No data available for Orthologs for MAPT-IT1 Gene

Paralogs for MAPT-IT1 Gene

No data available for Paralogs for MAPT-IT1 Gene

Variants for MAPT-IT1 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for MAPT-IT1 Gene

Disorders for MAPT-IT1 Gene

Relevant External Links for MAPT-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAPT-IT1

No disorders were found for MAPT-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAPT-IT1 Gene

Publications for MAPT-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for MAPT-IT1 Gene

Sources for MAPT-IT1 Gene

Content