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Aliases for MAPT-IT1 Gene

Subcategory (RNA class) for MAPT-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAPT-IT1 Gene

  • MAPT Intronic Transcript 1 2 3 5
  • MAPT Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MAPT-IT1 Gene

Previous GeneCards Identifiers for MAPT-IT1 Gene

  • GC17P043974
  • GC17P043976

Summaries for MAPT-IT1 Gene

GeneCards Summary for MAPT-IT1 Gene

MAPT-IT1 (MAPT Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAPT-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAPT-IT1 Gene

Genomics for MAPT-IT1 Gene

GeneHancer (GH) Regulatory Elements for MAPT-IT1 Gene

Promoters and enhancers for MAPT-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I045893 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.5 -535 2.9 HDGF ARNT SIN3A FEZF1 DMAP1 ZNF2 ZNF766 ZNF213 ZNF143 ZNF548 GC17P045896 MAPT MAPT-AS1 MAPT-IT1 LINC02210 MAPK8IP1P1 ENSG00000262372 KANSL1 ARL17A ARL17B
GH17I045903 Enhancer 0.8 ENCODE 0.4 +7.4 7447 0.2 HDAC1 PKNOX1 FOXA2 RAD21 YY1 SLC30A9 GATA2 RCOR1 ATF7 RXRA LINC02210 LRRC37A2 ENSG00000262881 GC17P045896 MAPT-IT1 MAPT PIRC95
GH17I045900 Enhancer 0.6 ENCODE 0.4 +5.2 5173 1.6 NCOA3 E2F1 ZNF664 ZNF217 JUND GATA3 CTBP1 MYC LINC02210 ENSG00000262881 GC17P045896 MAPT-IT1 MAPT PIRC95
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MAPT-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAPT-IT1 Gene

Genomic Locations for MAPT-IT1 Gene
chr17:45,895,783-45,898,798
(GRCh38/hg38)
Size:
3,016 bases
Orientation:
Plus strand
chr17:43,973,149-43,976,164
(GRCh37/hg19)

Genomic View for MAPT-IT1 Gene

Genes around MAPT-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAPT-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPT-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-IT1 Gene

Proteins for MAPT-IT1 Gene

Post-translational modifications for MAPT-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-IT1 Gene

Domains & Families for MAPT-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAPT-IT1 Gene

Function for MAPT-IT1 Gene

Phenotypes From GWAS Catalog for MAPT-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPT-IT1 Gene

Localization for MAPT-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAPT-IT1 Gene

Pathways & Interactions for MAPT-IT1 Gene

SuperPathways for MAPT-IT1 Gene

No Data Available

Interacting Proteins for MAPT-IT1 Gene

Gene Ontology (GO) - Biological Process for MAPT-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAPT-IT1 Gene

Drugs & Compounds for MAPT-IT1 Gene

No Compound Related Data Available

Transcripts for MAPT-IT1 Gene

mRNA/cDNA for MAPT-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAPT-IT1 Gene

MAPT intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-IT1 Gene

No ASD Table

Relevant External Links for MAPT-IT1 Gene

GeneLoc Exon Structure for
MAPT-IT1
ECgene alternative splicing isoforms for
MAPT-IT1

Expression for MAPT-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAPT-IT1 Gene

mRNA expression in normal human tissues for MAPT-IT1 Gene

SOURCE GeneReport for Unigene cluster for MAPT-IT1 Gene:

Hs.669307
genes like me logo Genes that share expression patterns with MAPT-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAPT-IT1 Gene

Orthologs for MAPT-IT1 Gene

Evolution for MAPT-IT1 Gene

ENSEMBL:
Gene Tree for MAPT-IT1 (if available)
TreeFam:
Gene Tree for MAPT-IT1 (if available)

No data available for Orthologs for MAPT-IT1 Gene

Paralogs for MAPT-IT1 Gene

No data available for Paralogs for MAPT-IT1 Gene

Variants for MAPT-IT1 Gene

Sequence variations from dbSNP and Humsavar for MAPT-IT1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1019760885 uncertain-significance, MAPT-Related Spectrum Disorders 45,894,678(+) G/T upstream_transcript_variant
rs1044833240 uncertain-significance, MAPT-Related Spectrum Disorders 45,894,390(+) G/A upstream_transcript_variant
rs11575895 benign, MAPT-Related Spectrum Disorders 45,894,419(+) A/G upstream_transcript_variant
rs144722105 benign, MAPT-Related Spectrum Disorders 45,894,660(+) CCC/CC upstream_transcript_variant
rs62056779 benign, MAPT-Related Spectrum Disorders 45,894,571(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MAPT-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv3178n100 CNV gain 25217958
esv2762433 CNV gain+loss 21179565
nsv1146669 OTHER inversion 26484159

Additional Variant Information for MAPT-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAPT-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAPT-IT1 Gene

Disorders for MAPT-IT1 Gene

Additional Disease Information for MAPT-IT1

No disorders were found for MAPT-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAPT-IT1 Gene

Publications for MAPT-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MAPT-IT1 Gene

Sources for MAPT-IT1 Gene

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