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Aliases for MAPT-AS1 Gene

Subcategory (RNA class) for MAPT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAPT-AS1 Gene

  • MAPT Antisense RNA 1 2 3 5
  • MAPT Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MAPT-AS1 Gene

Previous GeneCards Identifiers for MAPT-AS1 Gene

  • GC17M043921
  • GC17M045843

Summaries for MAPT-AS1 Gene

GeneCards Summary for MAPT-AS1 Gene

MAPT-AS1 (MAPT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAPT-AS1 Gene

Genomics for MAPT-AS1 Gene

Regulatory Elements for MAPT-AS1 Gene

Enhancers for MAPT-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MAPT-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MAPT-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MAPT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAPT-AS1 Gene

Chromosome:
17
Start:
45,799,390 bp from pter
End:
45,895,630 bp from pter
Size:
96,241 bases
Orientation:
Minus strand

Genomic View for MAPT-AS1 Gene

Genes around MAPT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAPT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAPT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-AS1 Gene

Proteins for MAPT-AS1 Gene

Post-translational modifications for MAPT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-AS1 Gene

Domains & Families for MAPT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAPT-AS1 Gene

Function for MAPT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAPT-AS1 Gene

Localization for MAPT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAPT-AS1 Gene

Pathways & Interactions for MAPT-AS1 Gene

SuperPathways for MAPT-AS1 Gene

No Data Available

Interacting Proteins for MAPT-AS1 Gene

Gene Ontology (GO) - Biological Process for MAPT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAPT-AS1 Gene

Drugs & Compounds for MAPT-AS1 Gene

No Compound Related Data Available

Transcripts for MAPT-AS1 Gene

mRNA/cDNA for MAPT-AS1 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAPT-AS1 Gene

MAPT antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-AS1 Gene

No ASD Table

Relevant External Links for MAPT-AS1 Gene

GeneLoc Exon Structure for
MAPT-AS1
ECgene alternative splicing isoforms for
MAPT-AS1

Expression for MAPT-AS1 Gene

mRNA expression in normal human tissues for MAPT-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MAPT-AS1 Gene

This gene is overexpressed in Testis (x5.4), Brain - Hypothalamus (x5.1), and Brain - Amygdala (x4.5).

SOURCE GeneReport for Unigene cluster for MAPT-AS1 Gene Hs.666302

genes like me logo Genes that share expression patterns with MAPT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MAPT-AS1 Gene

Orthologs for MAPT-AS1 Gene

Evolution for MAPT-AS1 Gene

ENSEMBL:
Gene Tree for MAPT-AS1 (if available)
TreeFam:
Gene Tree for MAPT-AS1 (if available)

No data available for Orthologs for MAPT-AS1 Gene

Paralogs for MAPT-AS1 Gene

No data available for Paralogs for MAPT-AS1 Gene

Variants for MAPT-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAPT-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs183086 -- 45,868,379(-) tcttg(C/T)gctga intron-variant
rs962885 -- 45,858,265(+) GGTCA(A/C/T)GGATG intron-variant
rs242921 -- 45,871,485(-) acccc(A/T)ggcta intron-variant
rs242922 -- 45,869,004(-) cagac(G/T)cctga intron-variant
rs242923 -- 45,868,615(-) ttgcc(C/T)gctga intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for MAPT-AS1 Gene

Disorders for MAPT-AS1 Gene

Relevant External Links for MAPT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAPT-AS1

No disorders were found for MAPT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAPT-AS1 Gene

Publications for MAPT-AS1 Gene

  1. Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study. (PMID: 24429156) Noth I. … Garcia J.G. (Lancet Respir Med 2013) 3 67
  2. Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases. (PMID: 22693459) Li R. … Richards J.B. (PLoS Genet. 2012) 3
  3. Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease. (PMID: 21738487) Do C.B. … Eriksson N. (PLoS Genet. 2011) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for MAPT-AS1 Gene

Sources for MAPT-AS1 Gene

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