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Aliases for MAPT-AS1 Gene

Subcategory (RNA class) for MAPT-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for MAPT-AS1 Gene

  • MAPT Antisense RNA 1 2 3
  • MAPT Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MAPT-AS1 Gene

ORGUL Members for MAPT-AS1 Gene

Previous GeneCards Identifiers for MAPT-AS1 Gene

  • GC17M043921

Summaries for MAPT-AS1 Gene

GeneCards Summary for MAPT-AS1 Gene

MAPT-AS1 (MAPT Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for MAPT-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MAPT-AS1 Gene

Genomics for MAPT-AS1 Gene

Genomic Location for MAPT-AS1 Gene

Start:
45,843,356 bp from pter
End:
45,895,600 bp from pter
Size:
52,245 bases
Orientation:
Minus strand

Genomic View for MAPT-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MAPT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAPT-AS1 Gene

No data available for Regulatory Elements for MAPT-AS1 Gene

Proteins for MAPT-AS1 Gene

Post-translational modifications for MAPT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAPT-AS1 Gene

Domains for MAPT-AS1 Gene

Gene Families for MAPT-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MAPT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAPT-AS1 Gene

Function for MAPT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MAPT-AS1 Gene

Localization for MAPT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAPT-AS1 Gene

Pathways for MAPT-AS1 Gene

SuperPathways for MAPT-AS1 Gene

No Data Available

Interacting Proteins for MAPT-AS1 Gene

Gene Ontology (GO) - Biological Process for MAPT-AS1 Gene

None

No data available for Pathways by source for MAPT-AS1 Gene

Transcripts for MAPT-AS1 Gene

mRNA/cDNA for MAPT-AS1 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAPT-AS1 Gene

MAPT antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAPT-AS1 Gene

No ASD Table

Relevant External Links for MAPT-AS1 Gene

GeneLoc Exon Structure for
MAPT-AS1
ECgene alternative splicing isoforms for
MAPT-AS1

Expression for MAPT-AS1 Gene

mRNA expression in normal human tissues for MAPT-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MAPT-AS1 Gene

This gene is overexpressed in Testis (5.4), Brain - Hypothalamus (5.1), and Brain - Amygdala (4.5).

SOURCE GeneReport for Unigene cluster for MAPT-AS1 Gene Hs.666302

genes like me logo Genes that share expressions with MAPT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for MAPT-AS1 Gene

Orthologs for MAPT-AS1 Gene

Evolution for MAPT-AS1 Gene

ENSEMBL:
Gene Tree for MAPT-AS1 (if available)
TreeFam:
Gene Tree for MAPT-AS1 (if available)

No data available for Orthologs for MAPT-AS1 Gene

Paralogs for MAPT-AS1 Gene

No data available for Paralogs for MAPT-AS1 Gene

Variants for MAPT-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAPT-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs183086 -- 45,868,379(-) tcttg(C/T)gctga intron-variant
rs242921 -- 45,871,485(-) acccc(A/T)ggcta intron-variant
rs242922 -- 45,869,004(-) cagac(G/T)cctga intron-variant
rs242923 -- 45,868,615(-) ttgcc(C/T)gctga intron-variant
rs242926 -- 45,888,739(-) agttc(C/G)cataa intron-variant

Relevant External Links for MAPT-AS1 Gene

HapMap Linkage Disequilibrium report
MAPT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MAPT-AS1 Gene

Disorders for MAPT-AS1 Gene

No disorders were found for MAPT-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for MAPT-AS1 Gene

Publications for MAPT-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease. (PMID: 21738487) Do C.B. … Eriksson N. (PLoS Genet. 2011) 3
  4. Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases. (PMID: 22693459) Li R. … Richards J.B. (PLoS Genet. 2012) 3
  5. Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study. (PMID: 24429156) Noth I. … Garcia J.G. (Lancet Respir Med 2013) 3

Products for MAPT-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MAPT-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MAPT-AS1
    • Block miRNA regulation of MAPT-AS1 using miScript Target Protectors

    Sources for MAPT-AS1 Gene

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