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MAP9 Gene

protein-coding   GIFtS: 48
GCID: GC04M156263

Microtubule-Associated Protein 9

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Microtubule-Associated Protein 91 2
Aster-Associated Protein1 2 3
ASAP2 3 5

External Ids:    HGNC: 261181   Entrez Gene: 798842   Ensembl: ENSG000001641147   OMIM: 6100705   UniProtKB: Q49MG53   

Export aliases for MAP9 gene to outside databases

Previous GC identifers: GC04M156483 GC04M152002


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MAP9 Gene:
ASAP is a microtubule-associated protein required for spindle function, mitotic progression, and cytokinesis
(Saffin et al., 2005 (PubMed 16049101)).(supplied by OMIM, Mar 2008)

GeneCards Summary for MAP9 Gene:
MAP9 (microtubule-associated protein 9) is a protein-coding gene. Diseases associated with MAP9 include hemopericardium, and metachromatic leukodystrophy.

UniProtKB/Swiss-Prot: MAP9_HUMAN, Q49MG5
Function: Involved in organization of the bipolar mitotic spindle. Required for bipolar spindle assembly, mitosis
progression and cytokinesis. May act by stabilizing interphase microtubules




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000004.12  NT_016354.20  NC_018915.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the MAP9 gene promoter:
         RFX1   MyoD   POU3F2 (N-Oct-5b)   STAT5A   HNF-3beta   CREB   MZF-1   Pax-4a   En-1   Ik-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for MAP9

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MAP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q32.1   Ensembl cytogenetic band:  4q32.1   HGNC cytogenetic band: 4q32.1

MAP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MAP9 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M156263:  view genomic region     (about GC identifiers)

Start:
156,263,810 bp from pter      End:
156,298,122 bp from pter
Size:
34,313 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: MAP9_HUMAN, Q49MG5 (See protein sequence)
Recommended Name: Microtubule-associated protein 9  
Size: 647 amino acids; 74234 Da
Subunit: Binds to purified microtubules via its C-terminus
Developmental stage: Constitutively expressed during the cell cycle
Secondary accessions: Q4W5I7 Q68DU1 Q9H781 Q9H7B6
Alternative splicing: 2 isoforms:  Q49MG5-1   Q49MG5-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for MAP9: NX_Q49MG5

Explore proteomics data for MAP9 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See MAP9 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001034669.1  
    ENSEMBL proteins: 
     ENSP00000310593   ENSP00000427402   ENSP00000422989   ENSP00000413553   ENSP00000394048  
     ENSP00000368550   ENSP00000401509  

    MAP9 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for MAP9

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    Cloud-Clone Corp. CLIAs for MAP9


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR026106 MAP9

    Graphical View of Domain Structure for InterPro Entry Q49MG5

    ProtoNet protein and cluster: Q49MG5


    MAP9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MAP9_HUMAN, Q49MG5
    Function: Involved in organization of the bipolar mitotic spindle. Required for bipolar spindle assembly, mitosis
    progression and cytokinesis. May act by stabilizing interphase microtubules

    Animal Models:

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    Selected qRT-PCR Assays for microRNAs that regulate MAP9 (see all 26):
    hsa-miR-142-5p hsa-miR-509-5p hsa-miR-548k hsa-miR-139-5p hsa-miR-371-5p hsa-miR-3921 hsa-miR-340 hsa-miR-373*
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    MAP9_HUMAN, Q49MG5: Cytoplasm. Cytoplasm, cytoskeleton. Cytoplasm, cytoskeleton, spindle. Note=Localizes to
    microtubules in interphase, associates with the mitotic spindle during mitosis, localizes to the central body
    during cytokinesis
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton5
    golgi apparatus4
    nucleus4
    cytosol3
    chloroplast1

    Gene Ontology (GO): 5 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ----
    GO:0005737cytoplasm IEA--
    GO:0005794Golgi apparatus ----
    GO:0005819spindle IEA--
    GO:0005874microtubule IEA--

    MAP9 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MAP9
    Interactions:

        Search GeneGlobe Interaction Network for MAP9

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for MAP9 (ENSP000003105934) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SH3KBP1ENSP000003809214STRING: ENSP00000380921
    EP300ENSP000002632534STRING: ENSP00000263253
    TP53ENSP000002693054STRING: ENSP00000269305
    About this table

    Gene Ontology (GO): 4 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000910cytokinesis IEA--
    GO:0007067mitosis IEA--
    GO:0007088regulation of mitosis IEA--
    GO:0051225spindle assembly IEA--

    MAP9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for MAP9



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for MAP9 gene: 
    NM_001039580.1  

    Unigene Cluster for MAP9:

    Microtubule-associated protein 9
    Hs.61271  [show with all ESTs]
    Unigene Representative Sequence: NM_001039580
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000311277(uc003ios.3 uc011cin.2 uc010iqa.1 uc003iot.1)
    ENST00000515654 ENST00000503466 ENST00000424373 ENST00000433024 ENST00000379248(uc010iqb.2)
    ENST00000481250 ENST00000450097
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate MAP9 (see all 26):
    hsa-miR-142-5p hsa-miR-509-5p hsa-miR-548k hsa-miR-139-5p hsa-miR-371-5p hsa-miR-3921 hsa-miR-340 hsa-miR-373*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MAP9
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat MAP9
      QuantiTect SYBR Green Assays in human, mouse, rat MAP9
      QuantiFast Probe-based Assays in human, mouse, rat MAP9

    Additional mRNA sequence: 

    AK024730.1 AK024812.1 AK301075.1 AY690636.1 BC022852.1 BC056683.1 BC128540.1 BC128541.1 
    BC146864.1 CR749274.1 

    5 DOTS entries:

    DT.97837203  DT.101965274  DT.97837204  DT.99990116  DT.97776186 

    Selected AceView cDNA sequences (see all 92):

    AI656815 AI080389 AI079258 AA805679 AI433877 AI075224 H97366 AI498318 
    BU629726 BU633891 AK024812 AI335673 BM021126 N34719 BX112660 CR749274 
    AI267304 BM670854 AL598336 AI273184 H97802 R96089 AA845360 AA912285 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for MAP9    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11
    SP1:                    -                                                                           
    SP2:                    -                                                           -               
    SP3:                                                                                                
    SP4:                    -     -                                                                     
    SP5:                                                                                                


    ECgene alternative splicing isoforms for MAP9

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    MAP9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAATGCACAG
    MAP9 Expression
    About this image

    MAP9 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    MAP9 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.61271
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAP9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for MAP9 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Map91 , 5 microtubule-associated protein 91, 5 76.96(n)1
    71.29(a)1
      3 (36.37 cM)5
    2135821  NM_001081230.11  NP_001074699.11 
     823580725 
    chicken
    (Gallus gallus)
    Aves MAP96
    microtubule-associated protein 9
    32(a)
    1 ↔ 1
    4(20085254-20097716)
    lizard
    (Anolis carolinensis)
    Reptilia MAP96
    microtubule-associated protein 9
    43(a)
    1 ↔ 1
    5(129804147-129823839)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia map91 microtubule-associated protein 9 54.79(n)
    40.97(a)
      100496836  XM_002933476.2  XP_002933522.1 
    zebrafish
    (Danio rerio)
    Actinopterygii map96
    microtubule-associated protein 9
    27(a)
    1 ↔ 1
    1(24595167-24607288) ENSDARG00000037276


    ENSEMBL Gene Tree for MAP9 (if available)
    TreeFam Gene Tree for MAP9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for MAP9 (see all 742)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs352881291,2
    C--156057167(+) TGAAA-/ATATATG 1 -- ut311Minor allele frequency- AT:0.00NA 2
    rs10203561,2
    C,F,O,H--156263418(+) ATTCAA/GTCCAG 1 -- ds500131Minor allele frequency- G:0.21NA EA NS WA CSA 2738
    rs1845670881,2
    --156263559(+) CTATAG/TCTCTC 1 -- ds50010--------
    rs738554081,2
    C,F--156263611(+) GGTTTC/TGAAAC 1 -- ds50012Minor allele frequency- T:0.04WA 120
    rs1890645791,2
    --156263698(+) ACTGAC/TGTGCA 1 -- ds50010--------
    rs1919950571,2
    --156263858(+) GACATC/TACAAA 1 -- ut310--------
    rs103261,2
    C,F,A,H--156263871(-) TGTCAT/CGGGTC 1 -- ut3116Minor allele frequency- C:0.24MN NA WA CSA EA 696
    rs729604931,2
    C--156264094(+) GGCTAC/TAAGAA 1 -- ut312Minor allele frequency- T:0.07CSA WA 119
    rs100341441,2
    C,F,H--156264133(+) TACCAT/CTTGTA 1 -- ut3119Minor allele frequency- C:0.16NS EA NA WA 2344
    rs1850680801,2
    --156264397(+) ACACAA/CAGATA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for MAP9 (156263810 - 156298122 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for MAP9:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv512839CNV Insertion21212237
    esv2619911CNV Insertion19546169
    nsv819084CNV Loss19587683
    nsv819615CNV Loss19587683
    nsv881641CNV Loss21882294
    nsv881593CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing MAP9
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 610070    OMIM disorders: --

    5 diseases for MAP9:    
    About MalaCards
    hemopericardium    metachromatic leukodystrophy    leukodystrophy    prostate cancer
    prostatitis

    1 disease from the University of Copenhagen DISEASES database for MAP9:
    Prostate cancer

    MAP9 for disorders           About GeneDecksing

    Genetic Association Database (GAD): MAP9
    Human Genome Epidemiology (HuGE) Navigator: MAP9 (1 document)

    Export disorders for MAP9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MAP9 gene, integrated from 10 sources (see all 17):
    (articles sorted by number of sources associating them with MAP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. ASAP, a human microtubule-associated protein required for bipolar spindle assembly and cytokinesis. (PubMed id 16049101)1, 2, 3 Saffin J.-M.... Rouquier S. (Proc. Natl. Acad. Sci. U.S.A. 2005)
    2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
    3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W.... Wilson R.K. (Nature 2005)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Induction of ASAP (MAP9) contributes to p53 stabilization in response to DNA damage. (PubMed id 22672907)1 Basbous J....Rouquier S. (Cell Cycle 2012)
    6. Plk1 regulates both ASAP localization and its role in spindle pole integrity. (PubMed id 20615875)1 Eot-Houllier G....Rouquier S. (J. Biol. Chem. 2010)
    7. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)
    8. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (Sci. Signal. 2009)
    9. ASAP is a novel substrate of the oncogenic mitotic kinase Aurora-A: phosphorylation on Ser625 is essential to spindle formation and mitosis. (PubMed id 17925329)1 Venoux M....Rouquier S. (Hum. Mol. Genet. 2008)
    10. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 79884 HGNC: 26118 AceView: FLJ21159 Ensembl:ENSG00000164114 euGenes: HUgn79884
    ECgene: MAP9 H-InvDB: MAP9

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for MAP9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MAP9 gene:
    Search GeneIP for patents involving MAP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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