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Aliases for MAP3K20-AS1 Gene

Subcategory (RNA class) for MAP3K20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAP3K20-AS1 Gene

  • MAP3K20 Antisense RNA 1 2 3 5
  • MLK7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MLK7 Antisense RNA 1 2
  • MLK7-AS1 3

External Ids for MAP3K20-AS1 Gene

Previous HGNC Symbols for MAP3K20-AS1 Gene

  • MLK7-AS1

Summaries for MAP3K20-AS1 Gene

GeneCards Summary for MAP3K20-AS1 Gene

MAP3K20-AS1 (MAP3K20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAP3K20-AS1 Gene

Genomics for MAP3K20-AS1 Gene

Regulatory Elements for MAP3K20-AS1 Gene

Enhancers for MAP3K20-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G173183 1.4 Ensembl ENCODE dbSUPER 5.8 +97.4 97437 2.0 TBP KLF17 ZBTB40 RAD21 ZEB1 TCF12 ZNF766 EGR1 ZNF366 RCOR1 MAP3K20 MAP3K20-AS1 PIR34994 GC02P173132
GH02G173209 1.6 Ensembl ENCODE dbSUPER 4.6 +71.3 71311 2.0 FOXA2 PKNOX1 ARNT SIN3A ZNF2 YY1 ZNF766 ZNF143 FOS DEK MAP3K20 CDCA7 LOC100289479 MAP3K20-AS1 PIR34994 GC02P173132
GH02G173174 1.1 dbSUPER 5.9 +106.6 106575 1.3 HDGF CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 CBX5 ZNF143 MAP3K20 MAP3K20-AS1 GC02P173132 PIR34994
GH02G173158 1.5 Ensembl ENCODE dbSUPER 4.2 +121.5 121548 3.8 PKNOX1 FOXA2 MLX SIN3A FEZF1 YY1 CBX5 ZNF143 FOS ZNF263 MAP3K20 MAP3K20-AS1 GC02P173132 PIR34994
GH02G173193 1.2 Ensembl ENCODE dbSUPER 5.2 +88.1 88070 0.5 MAFG ZNF175 GTF2A2 ZNF644 ZBTB40 ZNF316 ZNF274 MAFF IRF1 ZNF584 MAP3K20 MAP3K20-AS1 PIR34994 GC02P173132
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAP3K20-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAP3K20-AS1 Gene

Chromosome:
2
Start:
173,166,446 bp from pter
End:
173,282,036 bp from pter
Size:
115,591 bases
Orientation:
Minus strand

Genomic View for MAP3K20-AS1 Gene

Genes around MAP3K20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAP3K20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAP3K20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAP3K20-AS1 Gene

Proteins for MAP3K20-AS1 Gene

Post-translational modifications for MAP3K20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAP3K20-AS1 Gene

Domains & Families for MAP3K20-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAP3K20-AS1 Gene

Function for MAP3K20-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAP3K20-AS1 Gene

Localization for MAP3K20-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAP3K20-AS1 Gene

Pathways & Interactions for MAP3K20-AS1 Gene

SuperPathways for MAP3K20-AS1 Gene

No Data Available

Interacting Proteins for MAP3K20-AS1 Gene

Gene Ontology (GO) - Biological Process for MAP3K20-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAP3K20-AS1 Gene

Drugs & Compounds for MAP3K20-AS1 Gene

No Compound Related Data Available

Transcripts for MAP3K20-AS1 Gene

mRNA/cDNA for MAP3K20-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAP3K20-AS1 Gene

No ASD Table

Relevant External Links for MAP3K20-AS1 Gene

GeneLoc Exon Structure for
MAP3K20-AS1
ECgene alternative splicing isoforms for
MAP3K20-AS1

Expression for MAP3K20-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAP3K20-AS1 Gene

Orthologs for MAP3K20-AS1 Gene

Evolution for MAP3K20-AS1 Gene

ENSEMBL:
Gene Tree for MAP3K20-AS1 (if available)
TreeFam:
Gene Tree for MAP3K20-AS1 (if available)

No data available for Orthologs for MAP3K20-AS1 Gene

Paralogs for MAP3K20-AS1 Gene

No data available for Paralogs for MAP3K20-AS1 Gene

Variants for MAP3K20-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAP3K20-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs863225437 Pathogenic 173,232,359(+) CTTGT(G/T)TAAAG intron-variant, reference, missense
rs1000025659 -- 173,263,103(+) ACTGA(C/T)TGGTG intron-variant
rs1000033607 -- 173,262,599(+) GTCTC(-/AAAAAAGAAAAA)AAAAA intron-variant
rs1000035729 -- 173,209,180(+) CTCAC(C/T)CAGAT intron-variant
rs1000084344 -- 173,219,103(+) TTCAG(A/G)TATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MAP3K20-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3584178 CNV loss 25503493
nsv3037 CNV insertion 18451855
nsv834460 CNV gain 17160897
nsv953517 CNV duplication 24416366

Relevant External Links for MAP3K20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAP3K20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAP3K20-AS1 Gene

Disorders for MAP3K20-AS1 Gene

Relevant External Links for MAP3K20-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAP3K20-AS1

No disorders were found for MAP3K20-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAP3K20-AS1 Gene

Publications for MAP3K20-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for MAP3K20-AS1 Gene

Sources for MAP3K20-AS1 Gene

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