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Aliases for MAP3K20-AS1 Gene

Subcategory (RNA class) for MAP3K20-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAP3K20-AS1 Gene

  • MAP3K20 Antisense RNA 1 2 3
  • MLK7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MLK7 Antisense RNA 1 2 5
  • MLK7-AS1 3 5

External Ids for MAP3K20-AS1 Gene

Previous HGNC Symbols for MAP3K20-AS1 Gene

  • MLK7-AS1

Summaries for MAP3K20-AS1 Gene

GeneCards Summary for MAP3K20-AS1 Gene

MAP3K20-AS1 (MAP3K20 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAP3K20-AS1 Gene

Genomics for MAP3K20-AS1 Gene

Regulatory Elements for MAP3K20-AS1 Gene

Enhancers for MAP3K20-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F173183 1.1 Ensembl ENCODE 5.8 +97.4 97437 2.0 TBP KLF17 RAD21 ZEB1 ZNF766 ZNF366 RCOR1 FOS CEBPB ZEB2 MAP3K20 MAP3K20-AS1 PIR34994 GC02P173132
GH02F173209 1.3 Ensembl ENCODE 4.6 +71.3 71311 2.0 ATF1 PKNOX1 ARNT ZNF2 ZNF766 GATA2 ZNF143 FOS SP3 NCOA1 MAP3K20 CDCA7 LOC100289479 MAP3K20-AS1 PIR34994 GC02P173132
GH02F173158 1.2 Ensembl ENCODE 4.2 +121.5 121548 3.8 PKNOX1 MLX FEZF1 YY1 CBX5 ZNF143 FOS ZNF263 JUNB REST MAP3K20 MAP3K20-AS1 GC02P173132 PIR34994
GH02F173193 0.9 Ensembl ENCODE 5.2 +88.1 88070 0.5 MAFG ZNF175 GTF2A2 ZBTB40 ZNF644 ZNF316 IRF1 ZNF584 MAFK EMSY MAP3K20 MAP3K20-AS1 PIR34994 GC02P173132
GH02F173213 0.6 ENCODE 5.7 +67.7 67744 2.2 CTCF RAD21 YY1 ZNF316 ATF3 SMC3 NFE2 ZBTB33 MAP3K20 MAP3K20-AS1 PIR34994 GC02P173132
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAP3K20-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAP3K20-AS1 Gene

Chromosome:
2
Start:
173,166,446 bp from pter
End:
173,282,036 bp from pter
Size:
115,591 bases
Orientation:
Minus strand

Genomic View for MAP3K20-AS1 Gene

Genes around MAP3K20-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAP3K20-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAP3K20-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAP3K20-AS1 Gene

Proteins for MAP3K20-AS1 Gene

Post-translational modifications for MAP3K20-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAP3K20-AS1 Gene

Domains & Families for MAP3K20-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAP3K20-AS1 Gene

Function for MAP3K20-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAP3K20-AS1 Gene

Localization for MAP3K20-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAP3K20-AS1 Gene

Pathways & Interactions for MAP3K20-AS1 Gene

SuperPathways for MAP3K20-AS1 Gene

No Data Available

Interacting Proteins for MAP3K20-AS1 Gene

Gene Ontology (GO) - Biological Process for MAP3K20-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAP3K20-AS1 Gene

Transcripts for MAP3K20-AS1 Gene

mRNA/cDNA for MAP3K20-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAP3K20-AS1 Gene

MLK7 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAP3K20-AS1 Gene

No ASD Table

Relevant External Links for MAP3K20-AS1 Gene

GeneLoc Exon Structure for
MAP3K20-AS1
ECgene alternative splicing isoforms for
MAP3K20-AS1

Expression for MAP3K20-AS1 Gene

SOURCE GeneReport for Unigene cluster for MAP3K20-AS1 Gene:

Hs.570083
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MAP3K20-AS1 Gene

Orthologs for MAP3K20-AS1 Gene

Evolution for MAP3K20-AS1 Gene

ENSEMBL:
Gene Tree for MAP3K20-AS1 (if available)
TreeFam:
Gene Tree for MAP3K20-AS1 (if available)

No data available for Orthologs for MAP3K20-AS1 Gene

Paralogs for MAP3K20-AS1 Gene

No data available for Paralogs for MAP3K20-AS1 Gene

Variants for MAP3K20-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAP3K20-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs863225437 Pathogenic 173,232,359(+) CTTGT(G/T)TAAAG intron-variant, reference, missense
rs10169914 -- 173,229,401(+) AAATT(C/G)CTTGA intron-variant
rs10173050 -- 173,216,414(+) TTTTA(C/T)AAAAT intron-variant
rs10182247 -- 173,229,417(+) GAGGC(C/T)TGATT intron-variant
rs10183332 -- 173,198,825(+) TGAGC(C/G)TACAT intron-variant, splice-acceptor-variant

Structural Variations from Database of Genomic Variants (DGV) for MAP3K20-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3584178 CNV loss 25503493
nsv3037 CNV insertion 18451855
nsv834460 CNV gain 17160897
nsv953517 CNV duplication 24416366

Relevant External Links for MAP3K20-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAP3K20-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAP3K20-AS1 Gene

Disorders for MAP3K20-AS1 Gene

Relevant External Links for MAP3K20-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAP3K20-AS1

No disorders were found for MAP3K20-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAP3K20-AS1 Gene

Publications for MAP3K20-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for MAP3K20-AS1 Gene

Sources for MAP3K20-AS1 Gene

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