MAMDC4 Gene
protein-coding GIFtS : 41
GCID: GC09 P139745
MAM domain containing 4
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Aliasesfor MAMDC4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases MAM Domain Containing 4 1 2 AEGP1 2 3 MAM Domain-Containing Protein 42 3 DKFZp434M14111 Apical Early Endosomal Glycoprotein2 Apical Endosomal Glycoprotein2
Export aliases for MAMDC4 gene to outside databases Previous GC identifers: GC09P137023 GC09P138866 GC09P109206
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Summariesfor MAMDC4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: AEGP_HUMAN, Q6UXC1 Function : Probably involved in the sorting and selective transport of receptors and ligands across polarized epithelia(By similarity)
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Genomic Viewsfor MAMDC4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000009.11 NC_018920.1 NT_024000.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the MAMDC4 gene promoter: E47 C/EBPalpha Egr-2 RORalpha1 MEF-2A AREB6 SEF-1 (1) aMEF-2 NF-Y CBF(2) Other transcription factors Search SABiosciences Chromatin IP Primers for MAMDC4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MAMDC4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q34.3 Ensembl cytogenetic band: 9q34.3 HGNC cytogenetic band: 9q34.3 MAMDC4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P139745: view genomic region
(about GC identifiers )
Start:
139,745,395 bp from pter
End:
139,755,251 bp from pter
Size:
9,857 bases
Orientation:
plus strand
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Proteinsfor MAMDC4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: AEGP_HUMAN, Q6UXC1 (See
protein sequence )Recommended Name: Apical endosomal glycoprotein precursor Size : 1216 amino acids; 131499 Da
Subcellular location : Membrane; Single-pass type I membrane protein (By similarity)
Secondary accessions : A2A3D4 B0QZ81 Q5T5S2 Q8NCX7Alternative splicing : 3 isoforms : Q6UXC1-1 Q6UXC1-2 Q6UXC1-3 (May be due to intron retention. No experimental confirmation available)Explore the universe of human proteins at neXtProt for MAMDC4: NX_Q6UXC1 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6UXC1 MAMDC4 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_996803.2 ENSEMBL proteins: ENSP00000319388 ENSP00000400009 ENSP00000435513 ENSP00000411339 Human Recombinant Protein Products for MAMDC4: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
MAMDC4 for ontologies About GeneDecksing MAMDC4 Antibody Products: Assay Products for MAMDC4:
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Protein
Domains / Familiesfor MAMDC4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
MAMDC4 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6UXC1 ProtoNet protein and cluster: Q6UXC1
1 Blocks protein family : IPB002172 Low density lipoprotein-receptor UniProtKB/Swiss-Prot: AEGP_HUMAN, Q6UXC1 Similarity : Contains 3 LDL-receptor class A domainsSimilarity : Contains 6 MAM domains
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Functionfor MAMDC4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: AEGP_HUMAN, Q6UXC1 Function : Probably involved in the sorting and selective transport of receptors and ligands across polarized epithelia(By similarity) Animal Models:
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MAMDC4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MAMDC4OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MAMDC4 (NM_206920 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MAMDC4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MAMDC4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAMDC4
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Pathways & Interactionsfor MAMDC4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MAMDC4 Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0015031 protein transport
IEA --
MAMDC4 for ontologies About GeneDecksing
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Drugs & Compoundsfor MAMDC4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for MAMDC4 Search CenterWatch for drugs/clinical trials and news about MAMDC4 / AEGP
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Transcriptsfor MAMDC4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for MAMDC4 gene: NM_206920.2 Unigene Cluster for MAMDC4:
MAM domain containing 4 Hs.376780 [show with all ESTs ] Unigene Representative Sequence: AY358419 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000485732 ENST00000317446 (uc004cjs.3 ) ENST00000413647 ENST00000481327 ENST00000479475 ENST00000445819 (uc011mej.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MAMDC4 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MAMDC4OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: MAMDC4 (NM_206920 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for MAMDC4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MAMDC4
Additional cDNA sequence: AY358419.1 BC144258.1 BC144259.1
3 DOTS entries : DT.100739467 DT.40316134
DT.101983584 24/383 AceView cDNA sequences (see all 383 ):
BM832536 AA954003 AL045051 BM709330 AI139948 AF393504 AL137659 BG272982 AA687909 CA433414 BU727547 CB158840 AV693647 BU157095 BQ640096 CD671496 AI198392 BU726352 CD107634 BE502037 BU173973 BQ639651 BM662299 CR614794 GeneLoc Exon Structure
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Expression for MAMDC4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section MAMDC4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGGGCAGCCCAbout this image MAMDC4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
Stem Cell Differentiation: 2 LifeMap Cells Name Category PureStem™ mesenchymal progenitor SM30 (Embryonic Progenitor Cell)Adipose, Bone, Cartilage PureStem™ progenitor W8 (Embryonic Progenitor Cell)Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See MAMDC4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for MAMDC4 SOURCE GeneReport for Unigene cluster: Hs.376780 SABiosciences Custom PCR Arrays for MAMDC4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MAMDC4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat MAMDC4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MAMDC4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MAMDC4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAMDC4
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Orthologsfor MAMDC4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for MAMDC4 gene from 3/13 species (see all 13 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
MAMDC46
Uncharacterized protein
37(a)
1 ↔ 1
17(936761-945861)
lizard (Anolis carolinensis)
Reptilia
MAMDC46
--
17(a)
1 ↔ 1
GL344740.1(720-11959)
zebrafish (Danio rerio)
Actinopterygii
LOC7971661
apical endosomal glycoprotein-like
46.51(n) 35.76(a)
 
797166 XM_001337588.3 XP_001337624.3
ENSEMBL Gene Tree for MAMDC4 (if available)TreeFam Gene Tree for MAMDC4 (if available)
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Paralogsfor MAMDC4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for MAMDC4 gene MDGA2 2 MDGA1 2 C10orf112 2 MAMDC2 2 1 SIMAP similar gene for MAMDC4 using alignment to 2 protein entries: AEGP_HUMAN (see all proteins ):NRP1
MAMDC4 for paralogs About GeneDecksing
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Genomic Variantsfor MAMDC4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 9 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for MAMDC4 (139745395 - 139755251 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 7 variations for MAMDC4 7 CNVs : 3785 9631 30350 5415 23294 30359 31536
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MAMDC4
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Disorders
/ Diseasesfor MAMDC4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Publicationsfor MAMDC4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for MAMDC4 gene integrated from 9 sources : (articles sorted by number of sources associating them with MAMDC4) Utopia : connect your pdf to the dynamic world of online information
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Molecular characterization of an apical early endosomal glycoprotein from developing rat intestinal epithelial cells. (PubMed id 7829488) 1 , 3 Speelman B.A....Wilson J.M. (1995) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974) 2 Sjoeblom T.... Velculescu V.E. (2006) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 2 Humphray S.J.... Dunham I. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for MAMDC4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing MAMDC4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing MAMDC4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing MAMDC4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for MAMDC4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for MAMDC4 gene: Search GeneIP for patents involving MAMDC4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor MAMDC4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for MAMDC4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for MAMDC4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for MAMDC4 OriGene Protein Over-expression Lysate for MAMDC4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for MAMDC4 OriGene 3'-UTR Clone for MAMDC4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for MAMDC4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for MAMDC4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for MAMDC4 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for MAMDC4 OriGene Custom Protein Services for MAMDC4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MAMDC4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing MAMDC4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat MAMDC4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat MAMDC4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat MAMDC4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat MAMDC4
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAMDC4
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat MAMDC4
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