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Aliases for MAMDC2-AS1 Gene

Subcategory (RNA class) for MAMDC2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAMDC2-AS1 Gene

  • MAMDC2 Antisense RNA 1 2 3 5

External Ids for MAMDC2-AS1 Gene

Previous GeneCards Identifiers for MAMDC2-AS1 Gene

  • GC09M072701
  • GC09M070086

Summaries for MAMDC2-AS1 Gene

GeneCards Summary for MAMDC2-AS1 Gene

MAMDC2-AS1 (MAMDC2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAMDC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAMDC2-AS1 Gene

Genomics for MAMDC2-AS1 Gene

GeneHancer (GH) Regulatory Elements for MAMDC2-AS1 Gene

Promoters and enhancers for MAMDC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I070176 Enhancer 0.2 dbSUPER 565.7 -1.7 -1749 2.3 MAMDC2-AS1 SMC5 RPL24P8 RNU2-5P GC09M070189 GC09M070097 MAMDC2
GH09I070255 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.1 -82.3 -82332 5.8 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B ZNF766 SMC5 SMC5-AS1 PTAR1 MAMDC2-AS1 MAMDC2 RPL24P8 GC09M070097
GH09I070042 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 8.1 +131.1 131091 4.9 SP2 SIN3A REST ZNF335 SP1 ZFHX2 ZNF610 POLR2A FOS EZH2 MAMDC2 MAMDC2-AS1 SMC5 GC09M070050
GH09I070417 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 8.3 -244.2 -244249 5.6 CLOCK ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC MEF2D LOC101927086 SMC5 SMC5-AS1 PTAR1 MAMDC2-AS1 KLF9 LOC105376079
GH09I070159 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 15.4 +15.2 15189 1.8 GFI1B ATF7 ATF2 MAMDC2-AS1 MAMDC2 SMC5 PIR60342 GC09M070097
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MAMDC2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAMDC2-AS1 Gene

Genomic Locations for MAMDC2-AS1 Gene
chr9:70,033,921-70,175,888
(GRCh38/hg38)
Size:
141,968 bases
Orientation:
Minus strand
chr9:72,700,732-72,790,804
(GRCh37/hg19)

Genomic View for MAMDC2-AS1 Gene

Genes around MAMDC2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAMDC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAMDC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAMDC2-AS1 Gene

Proteins for MAMDC2-AS1 Gene

Post-translational modifications for MAMDC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAMDC2-AS1 Gene

Domains & Families for MAMDC2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAMDC2-AS1 Gene

Function for MAMDC2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAMDC2-AS1 Gene

Localization for MAMDC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAMDC2-AS1 Gene

Pathways & Interactions for MAMDC2-AS1 Gene

SuperPathways for MAMDC2-AS1 Gene

No Data Available

Interacting Proteins for MAMDC2-AS1 Gene

Gene Ontology (GO) - Biological Process for MAMDC2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAMDC2-AS1 Gene

Drugs & Compounds for MAMDC2-AS1 Gene

No Compound Related Data Available

Transcripts for MAMDC2-AS1 Gene

mRNA/cDNA for MAMDC2-AS1 Gene

(23) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MAMDC2-AS1 Gene

No ASD Table

Relevant External Links for MAMDC2-AS1 Gene

GeneLoc Exon Structure for
MAMDC2-AS1
ECgene alternative splicing isoforms for
MAMDC2-AS1

Expression for MAMDC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAMDC2-AS1 Gene

genes like me logo Genes that share expression patterns with MAMDC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAMDC2-AS1 Gene

Orthologs for MAMDC2-AS1 Gene

Evolution for MAMDC2-AS1 Gene

ENSEMBL:
Gene Tree for MAMDC2-AS1 (if available)
TreeFam:
Gene Tree for MAMDC2-AS1 (if available)

No data available for Orthologs for MAMDC2-AS1 Gene

Paralogs for MAMDC2-AS1 Gene

No data available for Paralogs for MAMDC2-AS1 Gene

Variants for MAMDC2-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAMDC2-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000045943 -- 70,161,912(-) A/C intron_variant
rs1000157085 -- 70,169,085(-) A/G intron_variant
rs1000198477 -- 70,174,367(-) G/A intron_variant
rs1000228706 -- 70,154,398(-) A/T intron_variant
rs1000415476 -- 70,161,526(-) GCAGGCATGC/GC intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MAMDC2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1047862 CNV gain 25217958
nsv6553 CNV insertion 18451855

Additional Variant Information for MAMDC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAMDC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAMDC2-AS1 Gene

Disorders for MAMDC2-AS1 Gene

Additional Disease Information for MAMDC2-AS1

No disorders were found for MAMDC2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAMDC2-AS1 Gene

Publications for MAMDC2-AS1 Gene

No publications were found for MAMDC2-AS1 Gene.

Products for MAMDC2-AS1 Gene

Sources for MAMDC2-AS1 Gene

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