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Aliases & Descriptions for MAL
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions T-cell differentiation protein MAL 2 T-lymphocyte maturation-associated protein 2 , 3 mal, T-cell differentiation protein 2 myelin and lymphocyte protein 2
Search outside databases for aliases for MAL genePrevious GC identifers: GC02P093589 GC02P094125 GC02P095159 GC02P095176
Summaries for MAL (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for MAL : The protein encoded by this gene is a highly hydrophobic integral membrane protein belonging to theMAL family of proteolipids. The protein has been localized to the endoplasmic reticulum of T-cellsand is a candidate linker protein in T-cell signal transduction. In addition, this proteolipid islocalized in compact myelin of cells in the nervous system and has been implicated in myelinbiogenesis and/or function. The protein plays a role in the formation, stabilization andmaintenance of glycosphingolipid-enriched membrane microdomains. Alternative splicing producesfour transcript variants which vary from each other by the presence or absence of alternativelyspliced exons 2 and 3. [provided by RefSeq] UniProtKB/Swiss-Prot: MAL_HUMAN, P21145 Function : Could be an important component in vesicular trafficking cycling between the Golgicomplex and the apical plasma membrane. Could be involved in myelin biogenesis and/or myelinfunction
Gene Wiki entry for MAL
Genomic Location for MAL
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the MAL gene Entrez Gene cytogenetic band: 2cen-q13 Ensembl cytogenetic band: 2q11.1 HGNC cytogenetic band: 2q11.1 MAL Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P095113:
(about GC identifiers )
Start:
95,055,156 bp from pter
End:
95,083,462 bp from pter
Size:
28,307 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000002.10 NT_026970.9 Proteins for MAL
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MAL_HUMAN, P21145 (See
protein sequence )Recommended Name: Myelin and lymphocyte protein Size : 153 amino acids; 16714 Da
Subcellular location : Membrane; Multi-pass membrane protein
Developmental stage : Expressed in the intermediate and late stages of T-cell differentiationAlternative splicing : 4 isoforms : P21145-1 P21145-2 P21145-3 P21145-4
Post-translational modifications:
Lipoprotein1
REFSEQ proteins (4 alternative transcripts):
NP_002362.1 NP_071883.1 NP_071884.1 NP_071885.1 ENSEMBL proteins: ENSP00000310880 ENSP00000306568 ENSP00000322860 ENSP00000304924 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for MAL: Assays for MAL:
Protein
Domains/ Families for MAL(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P21145 ProtoNet protein and cluster: P21145
1 Blocks protein family : IPB008253 Marvel UniProtKB/Swiss-Prot: MAL_HUMAN, P21145 Similarity : Belongs to the MAL familySimilarity : Contains 1 MARVEL domain
Gene Function for MAL
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_022438 Applied Biosystems Silencer ® siRNAs for MAL Sigma-Aldrich siRNA and siRNA Panels for MAL Sigma-Aldrich shRNA Panels and shRNA for MAL Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_002371                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_002371                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_002371  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002371 UniProtKB/Swiss-Prot: MAL_HUMAN, P21145 Function : Could be an important component in vesicular trafficking cycling between the Golgicomplex and the apical plasma membrane. Could be involved in myelin biogenesis and/or myelinfunction
Genatlas biochemistry entry for MAL :T-cell differentiation proteolipid protein,localized in the endoplasmic reticulum
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Mal) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for MAL
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for MAL 2 Interacting proteins for MAL (ENSP00000310880 3 ) via UniProtKB, MINT, and/or STRING About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
About this table
Drugs & Compounds for MAL (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for MAL 3 Novoseek chemical compound relationships for MAL gene
About this table
Transcripts for MAL(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_022438 Sigma-Aldrich siRNA and siRNA Panels for MAL Sigma-Aldrich shRNA Panels and shRNA for MAL Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002371 NM_022438 NM_022439 NM_022440
REFSEQ mRNAs for MAL gene (4 alternative transcripts): NM_002371.2 NM_022438.1 NM_022439.1 NM_022440.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002371 NM_022438 NM_022439 NM_022440
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_002371                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_002371                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_002371  
Additional cDNA sequence: AK096093.1 AK123269.1 AK311844.1 BC000458.2 BC003006.1 CR541879.1 M15800.1 X76678.1 X76679.1 X76680.1 X76681.1
6 DOTS entries : DT.451570 DT.97817686 DT.95272873 DT.99935745 DT.97806374 DT.92428352
24/134 AceView cDNA sequences (see all 134
):AA025979 NM_002371 BM703177 BX457478 AA227594 BM664675 CR541879 H41612 C00666 H20324 BC000458 AU099297 BI755543 T87640 X76680 CD674955 BC003006 X76679 AA341422 X76681 BQ067434 AA227727 AK096093 X76678
highest scoring ESTs for MAL :AA025161 AA025979 AA227594 AA227727 AA227885 AA228104 AA341422 AA640014 AA741204 AA769626
Unigene Cluster for MAL: Mal, T-cell differentiation protein Hs.80395 [show with all ESTs ] Unigene Representative Sequence: AK096093 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for MAL ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c SP1 :       -             SP2 :       -   -           SP3 :       -     -         SP4 :                  
About this scheme ECgene alternative splicing isoforms for MAL 4 Ensembl transcripts including schematic representations : ENST00000309988
ENST00000353004
ENST00000349807
ENST00000354078
Expression for MAL
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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MAL expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for MAL 1 / 2 / 3
3 probe-sets matching MAL gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGGAAGACGSOURCE GeneReport for Unigene cluster: Hs.80395 Expression variation in blood from EXPOLDB for MAL
Orthologs for MAL
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for MAL gene from 5/8 species (see all 8
)
About this table Species with no ortholog for MAL ENSEMBL Gene Tree for MAL Paralogs for MAL (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for MAL gene MAL2 2 MALL 2 PLLP 2 CMTM8 2
SNPs/Variants for MAL (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for MAL (up to first 250kb)
Disorders & Mutations for MAL
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 188860 2 Novoseek disease relationships for MAL gene
About this table 1 PharmGKB disease relationship for MAL gene About this table Human Gene Mutation Database : MAL Human Genome Epidemiology Navigator: MAL (16 documents)
Medical News for MAL (Possibly Related Articles in
Doctor's Guide )
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Publications for MAL (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/44 PubMed articles for MAL gene (see all 44
): Genomic structure and subcellular localization of MAL, a human T- cell-specific proteolipid protein. (PubMed id 8132541) 1, 3, 4 Rancano C.... Alonso M.A. (1994) Alternative splicing of human T-cell-specific MAL mRNA and its correlation with the exon/intron organization of the gene. (PubMed id 8088843) 1, 3, 4 Rancano C.... Alonso M.A. (1994) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) cDNA cloning and sequence of MAL, a hydrophobic protein associated with human T-cell differentiation. (PubMed id 3494249) 3, 4 Alonso M.A. and Weissman S.M. (1987) MAL expression in lymphoid cells: further evidence for MAL as a distinct molecular marker of primary mediastinal large B-cell lymphomas. (PubMed id 12429796) 1, 3 Copie-Bergman C....Gaulard P. (2002) Expression of the MAL gene in the thyroid: the MAL proteolipid, a component of glycolipid-enriched membranes, is apically distributed in thyroid follicles. (PubMed id 9528996) 1, 3 Martin-Belmonte F....Alonso M.A. (1998) MAL, a proteolipid in glycosphingolipid enriched domains: functional implications in myelin and beyond. (PubMed id 10739088) 1, 3 Frank M. (2000) Inactivation of the MAL gene in breast cancer is a common event that predicts benefit from adjuvant chemotherapy. (PubMed id 19208741) 1, 3 Horne H.N....Marks J.R. (2009) The MAL proteolipid is a component of the detergent-insoluble membrane subdomains of human T-lymphocytes. (PubMed id 9003426) 1, 3 Millan J....Alonso M.A. (1997) Caveolin and MAL, two protein components of internal detergent-insoluble membranes, are in distinct lipid microenvironments in MDCK cells. (PubMed id 9168919) 1, 3 Millan J....Alonso M.A. (1997)
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Genome Databases showing MAL
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing MAL
(According to HUGE )
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--
Specialized Databases showing MAL (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for MAL (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for MAL:
Recombinant Proteins (MAL ) Antibodies (MAL )
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