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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

MAK16 Gene

protein-coding GIFtS: 46
GCID: GC08P033342

MAK16 homolog (S. cerevisiae)

(Previous name: RNA binding motif protein 13 )
(Previous symbol: RBM13)

Explore 1 disease affiliated with
MAK16 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
MAK16 Homolog (S. Cerevisiae)¹ ²		NNP78² ³
RBM13¹ ² ³		Protein MAK16 Homolog²
MAK16L¹ ²		RNA Binding Protein²
RNA Binding Motif Protein 13¹ ²		Protein RBM13³

External Ids:	HGNC: 13703¹	Entrez Gene: 84549²	Ensembl: ENSG00000198042⁷	UniProtKB: Q9BXY0³

Export aliases for MAK16 gene to outside databases

Previous GC identifers: GC08P033464 GC08P031874

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for MAK16 (RBM13)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000008.10 NC_018919.1 NT_167187.1

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the MAK16 gene promoter:
Elk-1 FOXF2 MEF-2 LCR-F1 YY1 c-Ets-1 MEF-2A Nkx6-1 HFH-1 FOXO4
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: MAK16 promoter sequence

Search SABiosciences Chromatin IP Primers for MAK16

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MAK16

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8p12 Ensembl cytogenetic band: 8p12 HGNC cytogenetic band: 8p12

MAK16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MAK16 gene location

GeneLoc information about chromosome 8 GeneLoc Exon Structure

GeneLoc location for GC08P033342: view genomic region (about GC identifiers)

Start:	33,342,268 bp from pter	End:	33,358,778 bp from pter
Size:	16,511 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MAK16_HUMAN, Q9BXY0 (See protein sequence)

Recommended Name: Protein MAK16 homolog

Size: 300 amino acids; 35369 Da

Subcellular location: Nucleus, nucleolus

Secondary accessions: B2RB44 Q5U5T1 Q86UC4 Q96SY6

Explore the universe of human proteins at neXtProt for MAK16: NX_Q9BXY0

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q9BXY0

MAK16 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_115898.2

ENSEMBL proteins:

ENSP00000353246 ENSP00000430403

Human Recombinant Protein Products:

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	Uscn Proteins for MAK16

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005730	nucleolus	IEA	--

MAK16 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

MAK16 for domains About GeneDecksing

1 InterPro domain/family:

IPR006958 Mak16

Graphical View of Domain Structure for InterPro Entry Q9BXY0

ProtoNet protein and cluster: Q9BXY0

1 Blocks protein family: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

UniProtKB/Swiss-Prot: MAK16_HUMAN, Q9BXY0

Similarity: Belongs to the MAK16 family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

miRNA Products:		OriGene 3'-UTR Clone: MAK16 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat MAK16
		8/14 QIAGEN miScript miRNA Assays for microRNAs that regulate MAK16 (see all 14):
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for MAK16

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/61 Interacting proteins for MAK16 (Q9BXY0³ ENSP00000353246⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 61)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PES1	O00541³, ENSP00000346725⁴	I2D: score=5 STRING: ENSP00000346725
COX10	Q12887³, ENSP00000261643⁴	I2D: score=1 STRING: ENSP00000261643
DDX55	Q8NHQ9³, ENSP00000238146⁴	I2D: score=1 STRING: ENSP00000238146
RSL24D1	Q9UHA3³, ENSP00000260443⁴	I2D: score=2 STRING: ENSP00000260443
RPF1	Q9H9Y2³, ENSP00000359688⁴	I2D: score=1 STRING: ENSP00000359688

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MAK16
Search CenterWatch for drugs/clinical trials and news about MAK16

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for MAK16 gene:

NM_032509.3

Unigene Cluster for MAK16:

MAK16 homolog (S. cerevisiae)

Hs.583805 [show with all ESTs]

Unigene Representative Sequence: NM_032509

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000360128(uc003xjj.3) ENST00000517567 ENST00000520763 ENST00000518389

ENST00000519089

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		hsa-miR-3163 hsa-miR-576-5p hsa-miR-548am hsa-miR-4263 hsa-miR-452* hsa-miR-4282 hsa-miR-145* hsa-miR-1276

		SwitchGear 3'UTR luciferase reporter plasmid: MAK16 3' UTR sequence

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Additional cDNA sequence:

AF251062.1 AK027469.1 AK225476.1 AK314491.1 AL049422.1 BC015965.1 BC028230.1 BC039740.1

BC050528.1

3 DOTS entries:

DT.417148 DT.97842507 DT.91754281

24/138 AceView cDNA sequences (see all 138):

BQ003931 BU739253 BF739848 N36343 AA311927 N20272 BC015965 BM453641

BP355257 BU074444 AW504890 CA389303 AI656197 BQ938208 CA432842 AA416699

BQ432203 BM549323 BM824231 BQ900462 AA343763 CB158724 AW071429 CD514765

GeneLoc Exon Structure

5/6 Alternative Splicing Database (ASD) splice patterns (SP) for MAK16 (see all 6) About this scheme

ExUns:	1a	·	1b	·	1c	^	2	^	3a	·	3b	^	4	^	5a	·	5b	·	5c	^	6	^	7	^	8a	·	8b	·	8c	^	9	^	10
SP1:					-														-
SP2:																			-		-
SP3:					-
SP4:
SP5:					-

ECgene alternative splicing isoforms for MAK16

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

MAK16 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGCTGAGAAG

About this image

MAK16 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Kidney

Metanephros

Kidney

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See MAK16 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for MAK16

SOURCE GeneReport for Unigene cluster: Hs.583805

SABiosciences Custom PCR Arrays for MAK16

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for MAK16 gene from 10/35 species (see all 35) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Mak16^{1 , 5}	MAK16 homolog (S. cerevisiae)^{1, 5}	87.61(n)¹ 90.2(a)¹		8 (18.05 cM)⁵ 67920¹ NM_026453.3¹ NP_080729.1¹ 31159468⁵
chicken (Gallus gallus)	Aves	MAK16¹	MAK16 homolog (S. cerevisiae)	74.66(n) 81.85(a)		426924 XM_424533.3 XP_424533.2
lizard (Anolis carolinensis)	Reptilia	MAK16⁶	--	81(a)	1 ↔ 1	GL343238.1(1037185-1042737)
African clawed frog (Xenopus laevis)	Amphibia	mak16l-prov²	RNA binding protein	73.97(n)		BC043795.1
zebrafish (Danio rerio)	Actinopterygii	mak16l²	mak16-like homolog (S. pombe)	75.02(n)		192312 AY099519.1
fruit fly (Drosophila melanogaster)	Insecta	Rbm13¹	RNA-binding motif protein 13	56.88(n) 54.27(a)		31818 NM_132280.3 NP_572508.1
worm (Caenorhabditis elegans)	Secernentea	C16A3.6¹	Protein C16A3.6	55.86(n) 54.73(a)		175903 NM_065994.3 NP_498395.1
baker's yeast (Saccharomyces cerevisiae)	Saccharomycetes	MAK16(YAL025C)⁴ MAK16¹	Essential nuclear protein, constituent of 66S pre-ribosomal more⁴ Mak16p¹	54.65(n)¹ 50.88(a)¹		1(101145-100225)⁴ 851208^{1, 4} NP_009377.2¹ NP_009377.1⁴
thale cress (Arabidopsis thaliana)	eudicotyledons	AT1G23280¹	MAK16 protein-like protein	55.79(n) 48.75(a)		838937 NM_102177.2 NP_173742.1
rice (Oryza sativa)	Liliopsida	Os07g0271600¹	hypothetical protein	51.34(n) 49.11(a)		4342897 NM_001065881.2 NP_001059346.2

ENSEMBL Gene Tree for MAK16 (if available)
TreeFam Gene Tree for MAK16 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 8 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs142018277^1,2		--	33340698(+)	`ACGCCA/GTCCTT`	1	--	us2k¹		0	--	--	--	--
rs7816830^1,2	C,F,A,H,	--	33340772(+)	`ccaatC/Tagacc`	1	--	us2k¹		14		NS EA NA WA	1880
rs7838438^1,2	C,A,	--	33340856(+)	`GCTTAT/CTAAGA`	1	--	us2k¹		3		WA NA	240
rs7815973^1,2	C,F,A,H,	--	33340908(+)	`GCACCG/CAGGGC`	1	--	us2k¹		11		NS EA WA NA	1032
rs150280586^1,2		--	33341096(+)	`ACCACA/GCCTGG`	1	--	us2k¹		0	--	--	--	--
rs2732269^1,2		--	33341173(+)	`acctcA/Gggtga`	1	--	us2k¹ tfbs³		0	--	--	--	--
rs2732270^1,2	C,F,	--	33341191(+)	`GCCTCA/GGCCTC`	1	--	us2k¹		9		NA WA CSA	16
rs116634540^1,2	F,	--	33341334(+)	`TTGTGG/ACGCCA`	1	--	us2k¹		1		WA	118
rs189570883^1,2		--	33341359(+)	`GTGAGA/GACGAC`	1	--	us2k¹		0	--	--	--	--
rs34325031^1,2	C,	--	33341395(+)	`GTTTTC/-GTGGG`	1	--	us2k¹		1		CSA	2

HapMap Linkage Disequilibrium report for MAK16 (33342268 - 33358778 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for MAK16: --

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MAK16

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

MAK16 for disorders About GeneDecksing

1 disease for MAK16: About MalaCards

malaria

Export disorders for MAK16 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for MAK16 gene, integrated from 9 sources (see all 18):
(articles sorted by number of sources associating them with MAK16)

Utopia: connect your pdf to the dynamic
world of online information

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{1, 2} Olsen J.V....Mann M. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Functional proteomic analysis of human nucleolus. (PubMed id 12429849)^{1, 2} Scherl A.... Diaz J.-J. (2002)
Directed proteomic analysis of the human nucleolus. (PubMed id 11790298)^{1, 2} Andersen J.S.... Lamond A.I. (2002)
Functional proteomics establishes the interaction of S IRT7 with chromatin remodeling complexes and expands its role in regulation of R NA polymerase I transcription. (PubMed id 22586326)¹ Tsai Y.C....Cristea I.M. (2012)
A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)¹ Wagner S.A....Choudhary C. (2011)
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)² Rigbolt K.T....Blagoev B. (2011)
Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)¹ Danielsen J.M....Nielsen M.L. (2011)
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)² Olsen J.V....Mann M. (2010)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 84549	HGNC: 13703	AceView: LOC84549	Ensembl:ENSG00000198042	euGenes: HUgn84549
ECgene: MAK16	H-InvDB: MAK16

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for MAK16	Pharmacogenomics, SNPs, Pathways

Intellectual Property for MAK16 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for MAK16 gene:
Search GeneIP for patents involving MAK16

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes MAK16 gene at Home site.

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MAK16 Gene

MAK16 homolog (S. cerevisiae)

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MAK16 Gene

MAK16 homolog (S. cerevisiae)

Aliasesfor MAK16 gene

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Genomic Viewsfor MAK16 gene

Proteinsfor MAK16 gene

Protein Domains /Familiesfor MAK16 gene

Functionfor MAK16 gene

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