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Aliases for MAGT1 Gene

Aliases for MAGT1 Gene

  • Magnesium Transporter 1 2 3
  • IAP 3 4 6
  • Implantation-Associated Protein 3 4
  • XMEN 3 6
  • Oligosaccharyltransferase 3 Homolog B (S. Cerevisiae) 2
  • Oligosaccharyltransferase 3 Homolog B 3
  • Magnesium Transporter Protein 1 3
  • BA217H1.1 3
  • PRO0756 3
  • MRX95 3
  • OST3B 3
  • MagT1 4
  • IAG2 4

External Ids for MAGT1 Gene

Previous GeneCards Identifiers for MAGT1 Gene

  • GC0XM076968
  • GC0XM077081
  • GC0XM070668

Summaries for MAGT1 Gene

Entrez Gene Summary for MAGT1 Gene

  • This gene encodes a magnesium cation transporter protein that localizes to the cell membrane. This protein also associates with N-oligosaccharyl transferase and therefore may have a role in N-glycosylation. Mutations in this gene cause mental retardation X-linked type 95 (MRX95). This gene may have multiple in-frame translation initiation sites, one of which would encode a shorter protein with an N-terminus containing a signal peptide at amino acids 1-29. [provided by RefSeq, Jan 2010]

GeneCards Summary for MAGT1 Gene

MAGT1 (Magnesium Transporter 1) is a Protein Coding gene. Diseases associated with MAGT1 include immunodeficiency, x-linked, with magnesium defect, epstein-barr virus infection and neoplasia and non-syndromic x-linked intellectual disability. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include magnesium ion transmembrane transporter activity. An important paralog of this gene is TUSC3.

UniProtKB/Swiss-Prot for MAGT1 Gene

  • May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. May be involved in Mg(2+) transport in epithelial cells.

Gene Wiki entry for MAGT1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGT1 Gene

Genomics for MAGT1 Gene

Regulatory Elements for MAGT1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MAGT1 Gene

Start:
77,826,364 bp from pter
End:
77,895,593 bp from pter
Size:
69,230 bases
Orientation:
Minus strand

Genomic View for MAGT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MAGT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGT1 Gene

Proteins for MAGT1 Gene

  • Protein details for MAGT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H0U3-MAGT1_HUMAN
    Recommended name:
    Magnesium transporter protein 1
    Protein Accession:
    Q9H0U3
    Secondary Accessions:
    • B2RAR4
    • D3DTE3
    • Q53G00
    • Q6P577
    • Q8NBN6

    Protein attributes for MAGT1 Gene

    Size:
    335 amino acids
    Molecular mass:
    38037 Da
    Quaternary structure:
    • Weakly associates with the oligosaccharyl transferase (OST) complex which contains at least RPN1/ribophorin I, RPN2/ribophorin II, OST48, DAD1, and either STT3A or STT3B.

    Alternative splice isoforms for MAGT1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MAGT1 Gene

Proteomics data for MAGT1 Gene at MOPED

Post-translational modifications for MAGT1 Gene

Other Protein References for MAGT1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for MAGT1 Gene

Domains for MAGT1 Gene

Protein Domains for MAGT1 Gene

Suggested Antigen Peptide Sequences for MAGT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H0U3

UniProtKB/Swiss-Prot:

MAGT1_HUMAN :
  • Q9H0U3
Domain:
  • Contains 1 thioredoxin domain.
Family:
  • Belongs to the OST3/OST6 family.
genes like me logo Genes that share domains with MAGT1: view

No data available for Gene Families for MAGT1 Gene

Function for MAGT1 Gene

Molecular function for MAGT1 Gene

UniProtKB/Swiss-Prot Function: May be involved in N-glycosylation through its association with N-oligosaccharyl transferase. May be involved in Mg(2+) transport in epithelial cells.
UniProtKB/Swiss-Prot Induction: Up-regulated by low extracellular Mg(2+).

Gene Ontology (GO) - Molecular Function for MAGT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015095 magnesium ion transmembrane transporter activity IMP 19717468
genes like me logo Genes that share ontologies with MAGT1: view

Phenotypes for MAGT1 Gene

genes like me logo Genes that share phenotypes with MAGT1: view

Animal Model Products

CRISPR Products

miRNA for MAGT1 Gene

miRTarBase miRNAs that target MAGT1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MAGT1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for MAGT1 Gene

Localization for MAGT1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MAGT1 Gene

Cell membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MAGT1 Gene COMPARTMENTS Subcellular localization image for MAGT1 gene
Compartment Confidence
endoplasmic reticulum 5
plasma membrane 5
extracellular 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for MAGT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane NAS 19717468
GO:0008250 oligosaccharyltransferase complex IDA 15835887
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with MAGT1: view

Pathways for MAGT1 Gene

genes like me logo Genes that share pathways with MAGT1: view

Pathways by source for MAGT1 Gene

Gene Ontology (GO) - Biological Process for MAGT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006487 protein N-linked glycosylation NAS 18455129
GO:0015693 magnesium ion transport IMP 19717468
GO:0018279 protein N-linked glycosylation via asparagine TAS --
GO:0043687 post-translational protein modification TAS --
GO:0044267 cellular protein metabolic process TAS --
genes like me logo Genes that share ontologies with MAGT1: view

Transcripts for MAGT1 Gene

Unigene Clusters for MAGT1 Gene

Magnesium transporter 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MAGT1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGT1 Gene

No ASD Table

Relevant External Links for MAGT1 Gene

GeneLoc Exon Structure for
MAGT1
ECgene alternative splicing isoforms for
MAGT1

Expression for MAGT1 Gene

mRNA expression in normal human tissues for MAGT1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for MAGT1 Gene

SOURCE GeneReport for Unigene cluster for MAGT1 Gene Hs.323562

mRNA Expression by UniProt/SwissProt for MAGT1 Gene

Q9H0U3-MAGT1_HUMAN
Tissue specificity: Ubiquitous. Expressed at very low levels in brain, lung and kidney.
genes like me logo Genes that share expressions with MAGT1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for MAGT1 Gene

Orthologs for MAGT1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for MAGT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MAGT1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MAGT1 35
  • 94.43 (n)
  • 97.31 (a)
MAGT1 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MAGT1 35
  • 92.46 (n)
  • 93.46 (a)
MAGT1 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Magt1 35
  • 89.16 (n)
  • 90.71 (a)
Magt1 16
Magt1 36
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MAGT1 36
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 90 (a)
OneToMany
-- 36
  • 85 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Magt1 35
  • 89.09 (n)
  • 93.09 (a)
chicken
(Gallus gallus)
Aves MAGT1 35
  • 80.91 (n)
  • 89.78 (a)
MAGT1 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MAGT1 36
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia magt1 35
  • 76.45 (n)
  • 87.38 (a)
Str.15570 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9275 35
zebrafish
(Danio rerio)
Actinopterygii magt1 35
  • 75.03 (n)
  • 82.76 (a)
magt1 36
  • 80 (a)
OneToOne
wufc49b02 35
fruit fly
(Drosophila melanogaster)
Insecta CG7830 36
  • 51 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ZK686.3 36
  • 42 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes OST3 36
  • 19 (a)
OneToMany
OST3 38
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10969 36
  • 46 (a)
OneToMany
Species with no ortholog for MAGT1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for MAGT1 Gene

ENSEMBL:
Gene Tree for MAGT1 (if available)
TreeFam:
Gene Tree for MAGT1 (if available)

Paralogs for MAGT1 Gene

Paralogs for MAGT1 Gene

Selected SIMAP similar genes for MAGT1 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for MAGT1 Gene

genes like me logo Genes that share paralogs with MAGT1: view

Variants for MAGT1 Gene

Sequence variations from dbSNP and Humsavar for MAGT1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs13994 -- 77,826,498(+) CCAGA(A/G)AAGTA utr-variant-3-prime
rs1537892 -- 77,857,912(+) CTAAA(A/G)CAGCA intron-variant
rs2027209 -- 77,891,585(+) ATAGA(A/T)AATGA intron-variant
rs4826198 -- 77,849,367(+) gagcc(A/G)ccgca intron-variant
rs5912451 -- 77,831,502(+) AATAA(G/T)GAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGT1 Gene

Variant ID Type Subtype PubMed ID
nsv511668 CNV Loss 21212237
esv2740244 CNV Deletion 23290073
nsv512679 CNV Loss 21212237
esv2661329 CNV Deletion 23128226
dgv202e180 CNV Loss 20482838
nsv821080 CNV Deletion 20802225
nsv829381 CNV Loss 20364138
esv21463 CNV Gain+Loss 19812545
esv1784785 CNV Deletion 17803354

Relevant External Links for MAGT1 Gene

HapMap Linkage Disequilibrium report
MAGT1
Human Gene Mutation Database (HGMD)
MAGT1
Locus Specific Mutation Databases (LSDB)
MAGT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MAGT1 Gene

Disorders for MAGT1 Gene

(1) OMIM Diseases for MAGT1 Gene (300715)

UniProtKB/Swiss-Prot

MAGT1_HUMAN
  • Immunodeficiency, X-linked, with magnesium defect, Epstein-Barr virus infection and neoplasia (XMEN) [MIM:300853]: A disease characterized by CD4 lymphopenia, severe chronic viral infections, and defective T-lymphocyte activation. {ECO:0000269 PubMed:21796205}. Note=The disease is caused by mutations affecting the gene represented in this entry.
genes like me logo Genes that share disorders with MAGT1: view

Publications for MAGT1 Gene

  1. Identification and characterization of a novel mammalian Mg2+ transporter with channel-like properties. (PMID: 15804357) Goytain A. … Quamme G.A. (BMC Genomics 2005) 2 3 4
  2. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4
  3. Oligosaccharyltransferase-subunit mutations in nonsyndromic mental retardation. (PMID: 18455129) Molinari F. … Colleaux L. (Am. J. Hum. Genet. 2008) 3 4
  4. Mammalian MagT1 and TUSC3 are required for cellular magnesium uptake and vertebrate embryonic development. (PMID: 19717468) Zhou H. … Clapham D.E. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 4
  5. Oligosaccharyltransferase isoforms that contain different catalytic STT3 subunits have distinct enzymatic properties. (PMID: 12887896) Kelleher D.J. … Gilmore R. (Mol. Cell 2003) 3 4

Products for MAGT1 Gene

Sources for MAGT1 Gene

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