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MAGT1 Gene

protein-coding GIFtS: 46

GC0XM076968

magnesium transporter 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
DKFZp564K142 ^¹, ²
FLJ14726 ^²
IAG2 ^³
IAP ^¹, ², ³, ⁵
MGC64926 ^²
MagT1 ^³
OST3B ^¹, ²
OTTHUMP00000023589 ^²
OTTHUMP00000062081 ^²
PRO0756 ^²
bA217H1.1 ^²

Descriptions
Implantation-associated protein ^², ³
magnesium transporter 1 ^²

External Ids
HGNC: 28880¹
Entrez Gene: 84061²
UniProtKB: Q9H0U3³
Ensembl: ENSG00000102158⁷

Search outside databases for aliases for MAGT1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: MAGT1_HUMAN, Q9H0U3

Function: May be involved in N-glycosylation through its association with N-oligosaccharyl

transferase. May be involved in Mg(2+) transport in epithelial cells

Gene Wiki entry for MAGT1 (RP11-217H1.1)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq21.1 Ensembl cytogenetic band: Xq21.1 HGNC cytogenetic band: Xq21.1

MAGT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XM076968: (about GC identifiers)

Start:	76,968,517 bp from pter
End:	77,037,593 bp from pter
Size:	69,077 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000023.9 NT_011651.16

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: MAGT1_HUMAN, Q9H0U3 (See protein sequence)

Recommended Name: Magnesium transporter protein 1 precursor

Size: 335 amino acids; 38037 Da

Subunit: Weakly associates with the oligosaccharyl transferase (OST) complex which contains at

least RPN1/ribophorin I, RPN2/ribophorin II, OST48, DAD1, and either STT3A or STT3B (By

similarity)

Subcellular location: Endoplasmic reticulum membrane; Multi-pass membrane protein (Probable)

Secondary accessions: Q53G00 Q8NBN6

REFSEQ proteins: NP_115497.4

ENSEMBL proteins:

ENSP00000362434 ENSP00000362433 ENSP00000378943 ENSP00000354649 ENSP00000378946

Human Recombinant Proteins

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4 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005783	endoplasmic reticulum	IEA	--
GO:0008250	oligosaccharyltransferase complex	IDA	15835887
GO:0016020	membrane	IEA	--
GO:0016021	integral to membrane	IEA	--

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Antibodies for MAGT1:

	Browse Antibodies Central at Invitrogen
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Assays for MAGT1:

	Browse Invitrogen for biochemical assays
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	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9H0U3

ProtoNet protein and cluster: Q9H0U3

1 Blocks protein family: IPB006844 OST3/OST6

UniProtKB/Swiss-Prot: MAGT1_HUMAN, Q9H0U3

Similarity: Belongs to the OST3/OST6 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (MAGT1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_032121

Applied Biosystems Silencer® siRNAs for MAGT1

Sigma-Aldrich siRNA and siRNA Panels for MAGT1

Sigma-Aldrich shRNA for MAGT1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for MAGT1
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_032121
Myc/DDK tagged cDNA clone in CMV expression vector: NM_032121
untagged cDNA clone in CMV expression vector: NM_032121

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_032121

UniProtKB/Swiss-Prot: MAGT1_HUMAN, Q9H0U3

Function: May be involved in N-glycosylation through its association with N-oligosaccharyl

transferase. May be involved in Mg(2+) transport in epithelial cells

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004579	contributes to dolichyl-diphosphooligosaccharide-protein glycotransferase activity	TAS	12887896

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for MAGT1 (Your Favorite Gene powered by Ingenuity)

N-Glycan Biosynthesis

GeneDecks MAGT1 for the pathways selected above

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5/9 Interacting proteins for MAGT1 (ENSP00000354649³) via UniProtKB, MINT, and/or STRING (see all 9 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
DDOST	ENSP00000364188³	STRING (score=.922)
DAD1	ENSP00000250498³	STRING (score=.903)
RPN1	ENSP00000296255³	STRING (score=.899)
RPN2	ENSP00000345904³	STRING (score=.899)
TUSC3	ENSP00000221167³	STRING (score=.899)

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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0018279	protein amino acid N-linked glycosylation via asparagine	TAS	12887896

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for MAGT1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (MAGT1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_032121

Sigma-Aldrich siRNA and siRNA Panels for MAGT1

Sigma-Aldrich shRNA for MAGT1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_032121

REFSEQ mRNAs for MAGT1 gene:

NM_032121.5

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_032121

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_032121
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_032121
                                 untagged cDNA clone in CMV expression vector: NM_032121

Additional cDNA sequence:

AK027632.1 XM_001722247.1

11 DOTS entries:

DT.95245342 DT.95129638 DT.100753133 DT.121292715 DT.95129646 DT.100826606 DT.100826609 DT.121292714

DT.91639236 DT.100826607 DT.95129637

24/289 AceView cDNA sequences (see all 289 ):

BP344320 AI628314 BM828564 AI215697 W38740 AW197684 AI436234 AI872218

AI219265 AW518003 BM876318 AI498655 AA196715 AA890501 BC018447 C03639

AI298715 BM842185 CR599925 BM763184 BF445892 BU072446 AK075394 BX956360

Unigene Clusters for MAGT1:

Magnesium transporter 1

Hs.323562 [show with all ESTs], Hs.710189 [show with all ESTs]

Unigene Representative Sequences: NM_032121, AK027632

GeneLoc Exon Structure

5 Ensembl transcripts including schematic representations:

ENST00000373338 ENST00000373336 ENST00000395576 ENST00000358075 ENST00000395579

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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MAGT1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for MAGT1

¹ / ²

7 probe-sets matching MAGT1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
90925_at²	U95-E	2	1.00	0.50	0.94	0.96	--	--	--	--	--
45230_at²	U95-B	2	1.00	0.50	0.92	1.20	--	--	--	--	--
43481_at²	U95-B	2	1.00	0.50	0.75	0.84	--	--	--	--	--
224899_s_at²	U133-B	2	1.00	0.50	--	--	--	--	--	--	--
221553_at²	U133-A	2	1.00	0.50	--	--	--	--	--	--	--
224899_s_at²	U133Plus2	2	1.00	0.50	--	--	--	--	--	--	--
221553_at²	U133Plus2	2	1.00	0.50	--	--	--	--	--	--	--

GeneDecks MAGT1 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
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CGAP SAGE TAG: --

SOURCE GeneReport for Unigene clusters: Hs.323562 Hs.710189
UniProtKB/Swiss-Prot: MAGT1_HUMAN, Q9H0U3
Tissue specificity: Expressed in placenta, liver, muscle and pancreas, and at very low levels in
brain, lung and kidney

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for MAGT1 gene from 5/13 species (see all 13 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	MAGT1¹	--	magnesium transporter 1	93.83(n) 96.72(a)	491975 XM_549095.2 XP_549095.2
rat (Rattus norvegicus)	Magt1¹	--	magnesium transporter 1	89.33(n) 93.66(a)	116967 NM_053946.1 NP_446398.1
mouse (Mus musculus)	Magt1^{1, 5}	X⁵	magnesium transporter 1^{1, 5}	90.63(n)¹ 94.56(a)¹	67075¹ NM_025952.2¹ NP_080228.2¹ AI448366⁵ AK012185⁵ (see all 13)
chicken (Gallus gallus)	MAGT1¹	--	magnesium transporter 1	81.16(n) 90.06(a)	422332 NM_001006435.1 NP_001006435.1
zebrafish (Danio rerio)	wufc49b02²	--	wufc49b02	78.66(n)	324944 BC046002.1

About this table Species with no ortholog for MAGT1

ENSEMBL Gene Tree for MAGT1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for MAGT1 gene

ENSG00000215762² TUSC3²

Pseudogenes

1 related pseudogene

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/97 NCBI SNPs in MAGT1 are shown (see all 97 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 2)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
--	rs6616733^1,2	A	77018319(+)	`tatatA/Tttttt`	1	--	int¹ trp³		0	--	--	--	--
--	rs4826198^1,2	C	76991520(+)	`gagccA/Gccgca`	1	--	int¹		0	--	--	--	--
--	rs11266653^1,2	A	77023987(+)	`ggaatC/Tgccac`	1	--	int¹		0	--	--	--	--
--	rs5959775^1,2	A	76991943(+)	`gaatcA/Gcctga`	1	--	int¹		0	--	--	--	--
--	rs6622371^1,2	H	76973084(+)	`GCAGGT/CTGAGT`	1	--	int¹		4		EU EA WA	418
--	rs34489722^1,2	--	77039440(+)	`TGGTG-/CGTGGT`	1	--	ng3¹		0	--	--	--	--
--	rs35532825^1,2	--	77039076(+)	`GTGTGA/GTGGCG`	1	--	ng3¹		0	--	--	--	--
--	rs5959873^1,2	--	77023315(+)	`GATACC/GGTTTT`	1	--	int¹		0	--	--	--	--
--	rs6622455^1,2	--	77025635(+)	`AGGCTC/TTTATA`	1	--	int¹		0	--	--	--	--
--	rs71868973^1,2	--	77033479(+)	`CTATC-/CTATC TATCTATTATCT`	1	--	int¹		0	--	--	--	--

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HapMap Linkage Disequilibrium images for MAGT1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 300715 disorders: 300716

UniProtKB/Swiss-Prot: MAGT1_HUMAN, Q9H0U3

Defects in MAGT1 are the cause of mental retardation X-linked type 95 (MRX95)

[MIM:300716]. Mental retardation is characterized by significantly sub-average general

intellectual functioning associated with impairments in adaptative behavior and manifested during

the developmental period. In contrast to syndromic or specific X-linked mental retardation which

also present with associated physical, neurological and/or psychiatric manifestations,

intellectual deficiency is the only primary symptom of non-syndromic X-linked mental retardation

Human Gene Mutation Database: MAGT1

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/14 PubMed articles for MAGT1 gene (see all 14 ):

Identification and characterization of a novel mammalian Mg2+ transporter with channel-like properties. (PubMed id 15804357)^{2, 3, 4} Goytain A. and Quamme G.A. (2005)
Oligosaccharyltransferase-subunit mutations in nonsyndromic mental retardation. (PubMed id 18455129)^{3, 4} Molinari F.... Colleaux L. (2008)
Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PubMed id 16303743)^{3, 4} Otsuki T....Isogai T. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)^{3, 4} Deloukas P.... Rogers J. (2004)
Oligosaccharyltransferase isoforms that contain different catalytic STT3 subunits have distinct enzymatic properties. (PubMed id 12887896)^{3, 4} Kelleher D.J.... Gilmore R. (2003)
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{3, 4} Clark H.F....Gray A. (2003)
Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)^{3, 4} Wiemann S.... Poustka A. (2001)
Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61, TRAP, and two potential new subunits. (PubMed id 15835887)³ Shibatani T.... Skach W.R. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 84061	HGNC: 28880	AceView: DKFZp564K142	Ensembl:ENSG00000102158	euGenes: HUgn84061
ECgene: MAGT1	H-InvDB: MAGT1

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for MAGT1
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for MAGT1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for MAGT1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for MAGT1		Browse antibodies at Sigma-Aldrich
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	Lentivirus-delivered shRNAs for MAGT1		Browse small molecules at Sigma-Aldrich
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MAGT1 Gene

protein-coding GIFtS: 46

Aliases &
Descriptions
for MAGT1

Summaries
for MAGT1

Genomic Location
for MAGT1

Proteins
for MAGT1

Protein Domains/
Families
for MAGT1

Gene Function
for MAGT1

Pathways & Interactions
for MAGT1

Drugs & Compounds
for MAGT1

Transcripts
for MAGT1

Expression
for MAGT1

Orthologs
for MAGT1

Paralogs
for MAGT1

SNPs/Variants
for MAGT1

Disorders & Mutations
for MAGT1

Medical News
for MAGT1

Publications
for MAGT1

Search for MAGT1

Genome Databases showing MAGT1

Other Databases showing MAGT1

Specialized Databases showing MAGT1

Licensable Technologies
for MAGT1

Services
for MAGT1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

MAGT1 Gene

protein-coding GIFtS: 46

Aliases & Descriptionsfor MAGT1

Summariesfor MAGT1

Genomic Locationfor MAGT1

Proteinsfor MAGT1

Protein Domains/Familiesfor MAGT1

Gene Functionfor MAGT1

Pathways & Interactionsfor MAGT1

Drugs & Compoundsfor MAGT1

Transcriptsfor MAGT1

Expression for MAGT1

Orthologsfor MAGT1

Paralogsfor MAGT1

SNPs/Variantsfor MAGT1

Disorders & Mutationsfor MAGT1

Medical Newsfor MAGT1

Publicationsfor MAGT1

Search for MAGT1

Genome Databases showing MAGT1

Other Databases showing MAGT1

Specialized Databases showing MAGT1

Licensable Technologiesfor MAGT1

Servicesfor MAGT1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for MAGT1

Summaries
for MAGT1

Genomic Location
for MAGT1

Proteins
for MAGT1

Protein Domains/
Families
for MAGT1

Gene Function
for MAGT1

Pathways & Interactions
for MAGT1

Drugs & Compounds
for MAGT1

Transcripts
for MAGT1

Expression
for MAGT1

Orthologs
for MAGT1

Paralogs
for MAGT1

SNPs/Variants
for MAGT1

Disorders & Mutations
for MAGT1

Medical News
for MAGT1

Publications
for MAGT1

Licensable Technologies
for MAGT1

Services
for MAGT1