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Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MAGI2-AS3 Gene

ORGUL Members for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for MAGI2-AS3 Gene

Start:
79,452,877 bp from pter
End:
79,471,208 bp from pter
Size:
18,332 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

No data available for Regulatory Elements for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains for MAGI2-AS3 Gene

Gene Families for MAGI2-AS3 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MAGI2-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways for MAGI2-AS3 Gene

SuperPathways for MAGI2-AS3 Gene

No Data Available

Interacting Proteins for MAGI2-AS3 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene

None

No data available for Pathways by source for MAGI2-AS3 Gene

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

(9) Additional mRNA sequences :
(29) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS3 Gene

MAGI2 antisense RNA 3:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MAGI2-AS3
    • Block miRNA regulation of MAGI2-AS3 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for MAGI2-AS3

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

    No ASD Table

    Relevant External Links for MAGI2-AS3 Gene

    GeneLoc Exon Structure for
    MAGI2-AS3
    ECgene alternative splicing isoforms for
    MAGI2-AS3

    Expression for MAGI2-AS3 Gene

    mRNA expression in normal human tissues for MAGI2-AS3 Gene

    SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene Hs.31474

    genes like me logo Genes that share expressions with MAGI2-AS3: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MAGI2-AS3 Gene

    Orthologs for MAGI2-AS3 Gene

    Evolution for MAGI2-AS3 Gene

    ENSEMBL:
    Gene Tree for MAGI2-AS3 (if available)
    TreeFam:
    Gene Tree for MAGI2-AS3 (if available)

    No data available for Orthologs for MAGI2-AS3 Gene

    Paralogs for MAGI2-AS3 Gene

    No data available for Paralogs for MAGI2-AS3 Gene

    Variants for MAGI2-AS3 Gene

    Sequence variations from dbSNP and Humsavar for MAGI2-AS3 Gene

    SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
    rs140713 -- 79,459,030(+) TAGTT(-/CTGT/TGTC)TGTGG intron-variant
    rs726655 -- 79,467,259(+) AAATG(A/G)GGGTT nc-transcript-variant, intron-variant
    rs980354 -- 79,465,960(+) TTTAT(A/G)TAATT nc-transcript-variant, intron-variant
    rs1055056 -- 79,460,431(+) CATCT(C/T)AAAAA nc-transcript-variant, intron-variant
    rs2158706 -- 79,469,955(+) ATTTT(A/G)GTGGA intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

    Variant ID Type Subtype PubMed ID
    nsv888512 CNV Loss 21882294
    nsv888515 CNV Loss 21882294
    dgv7348n71 CNV Loss 21882294
    nsv428175 CNV Gain 18775914

    Relevant External Links for MAGI2-AS3 Gene

    HapMap Linkage Disequilibrium report
    MAGI2-AS3

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

    Disorders for MAGI2-AS3 Gene

    No disorders were found for MAGI2-AS3 Gene.

    No data available for UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

    Publications for MAGI2-AS3 Gene

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
    2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    4. Fine expression profiling of full-length transcripts using a size- unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M. … Kato S. (DNA Res. 2008) 3
    5. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim Y.C. … Wang S.M. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3

    Products for MAGI2-AS3 Gene

    Sources for MAGI2-AS3 Gene

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