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Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3 5
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

Regulatory Elements for MAGI2-AS3 Gene

Enhancers for MAGI2-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F079280 1.3 FANTOM5 Ensembl ENCODE 10.6 -170.1 -170138 4.3 CTCF ZNF146 JUN BACH1 CEBPG RAD21 ZNF316 SMC3 NFE2 MAFK MAGI2-AS3 MAGI2 GC07M079259 RNU6-530P GC07M079344
GH07F079317 1.4 FANTOM5 Ensembl ENCODE 8.6 -135.1 -135096 1.0 ELF3 PKNOX1 SIN3A RAD21 ZEB1 ZNF366 FOS MIXL1 ZNF263 TSHZ1 MAGI2-AS3 MAGI2 GC07M079344 RNU6-530P GC07M079259
GH07F079290 1.1 FANTOM5 ENCODE 10.6 -160.4 -160365 4.2 SOX13 CHD4 GATA3 RERE FOS EGR2 GATAD2A FOXA3 MIER2 ATF2 MAGI2-AS3 MAGI2 GC07M079259 RNU6-530P GC07M079344
GH07F079461 0.9 ENCODE 10.8 +8.9 8922 1.0 ELF3 MLX ARID4B THRB RAD21 ZBTB40 RARA GATA4 FOS CREM MAGI2-AS3 MAGI2 GC07M079545
GH07F079450 1.1 ENCODE 7.3 +0.4 383 4.8 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS ZNF263 MAGI2-AS3 MAGI2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for MAGI2-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000629087 623 3801 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS ZNF263

Genomic Location for MAGI2-AS3 Gene

Chromosome:
7
Start:
79,452,877 bp from pter
End:
79,471,208 bp from pter
Size:
18,332 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS3 Gene

Genes around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains & Families for MAGI2-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways & Interactions for MAGI2-AS3 Gene

SuperPathways for MAGI2-AS3 Gene

No Data Available

Interacting Proteins for MAGI2-AS3 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI2-AS3 Gene

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

(9) Additional mRNA sequences :
(26) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS3 Gene

MAGI2 antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

No ASD Table

Relevant External Links for MAGI2-AS3 Gene

GeneLoc Exon Structure for
MAGI2-AS3
ECgene alternative splicing isoforms for
MAGI2-AS3

Expression for MAGI2-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MAGI2-AS3 Gene

SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene:

Hs.31474
genes like me logo Genes that share expression patterns with MAGI2-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MAGI2-AS3 Gene

Orthologs for MAGI2-AS3 Gene

Evolution for MAGI2-AS3 Gene

ENSEMBL:
Gene Tree for MAGI2-AS3 (if available)
TreeFam:
Gene Tree for MAGI2-AS3 (if available)

No data available for Orthologs for MAGI2-AS3 Gene

Paralogs for MAGI2-AS3 Gene

No data available for Paralogs for MAGI2-AS3 Gene

Variants for MAGI2-AS3 Gene

Sequence variations from dbSNP and Humsavar for MAGI2-AS3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs148240352 Uncertain significance 79,453,102(+) GCCAC(A/G)GGGGT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs146012909 Benign 79,453,045(+) CGGAG(C/G)GGGTC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs1003900 -- 79,452,967(+) CCTGC(G/T)CCCCG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs10085575 -- 79,469,795(+) TTAGA(A/G)AGAAC intron-variant
rs10215487 -- 79,465,031(+) TGGTG(A/G)GGTTC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2764028 CNV gain+loss 21179565
nsv428175 CNV gain 18775914
nsv607659 CNV gain 21841781

Relevant External Links for MAGI2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI2-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI2-AS3 Gene

Disorders for MAGI2-AS3 Gene

Relevant External Links for MAGI2-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI2-AS3

No disorders were found for MAGI2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS3 Gene

Publications for MAGI2-AS3 Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim Y.C. … Wang S.M. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 64
  2. Fine expression profiling of full-length transcripts using a size- unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M. … Kato S. (DNA Res. 2008) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for MAGI2-AS3 Gene

Sources for MAGI2-AS3 Gene

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