Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3 5
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAGI2-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

Regulatory Elements for MAGI2-AS3 Gene

Enhancers for MAGI2-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H079280 1.2 FANTOM5 Ensembl ENCODE 10.6 -170.1 -170138 4.3 CTCF JUN CEBPB MAFG BACH1 CEBPG EP300 RAD21 MAFF JUND MAGI2-AS3 MAGI2 GC07M079259 GC07M079344 RNU6-530P
GH07H079317 1.4 FANTOM5 Ensembl ENCODE 8.6 -135.1 -135096 1 ELF3 PKNOX1 FOXA2 ZEB1 ZNF366 FOS MIXL1 TSHZ1 ZEB2 PPARG MAGI2-AS3 MAGI2 RNU6-530P GC07M079344 GC07M079259
GH07H079290 1.1 FANTOM5 ENCODE 10.6 -160.4 -160365 4.2 SOX13 FOXA2 CHD4 GATA3 RERE FOS ATF7 EGR2 GATAD2A FOXA3 MAGI2-AS3 MAGI2 GC07M079259 RNU6-530P GC07M079344
GH07H079461 0.9 ENCODE 10.8 +8.9 8922 1 ELF3 FOXA2 MLX ARID4B RAD21 THRB RARA FOS CREM HMG20B MAGI2-AS3 MAGI2 GC07M079546
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for MAGI2-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Locations for MAGI2-AS3 Gene

Genomic Locations for MAGI2-AS3 Gene
18,332 bases
Plus strand

Genomic View for MAGI2-AS3 Gene

Genes around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains & Families for MAGI2-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

Phenotypes From GWAS Catalog for MAGI2-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways & Interactions for MAGI2-AS3 Gene

SuperPathways for MAGI2-AS3 Gene

No Data Available

Interacting Proteins for MAGI2-AS3 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene


No data available for Pathways by source and SIGNOR curated interactions for MAGI2-AS3 Gene

Drugs & Compounds for MAGI2-AS3 Gene

No Compound Related Data Available

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

(9) Additional mRNA sequences :
(26) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS3 Gene

MAGI2 antisense RNA 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

No ASD Table

Relevant External Links for MAGI2-AS3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MAGI2-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAGI2-AS3 Gene

SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene:

genes like me logo Genes that share expression patterns with MAGI2-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI2-AS3 Gene

Orthologs for MAGI2-AS3 Gene

Evolution for MAGI2-AS3 Gene

Gene Tree for MAGI2-AS3 (if available)
Gene Tree for MAGI2-AS3 (if available)

No data available for Orthologs for MAGI2-AS3 Gene

Paralogs for MAGI2-AS3 Gene

No data available for Paralogs for MAGI2-AS3 Gene

Variants for MAGI2-AS3 Gene

Sequence variations from dbSNP and Humsavar for MAGI2-AS3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs148240352 Uncertain significance 79,453,102(+) GCCAC(A/G)GGGGT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs146012909 Benign 79,453,045(+) CGGAG(C/G)GGGTC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs1000089623 -- 79,464,908(+) GAGGC(C/T)GCTTC intron-variant, nc-transcript-variant
rs1000173678 -- 79,456,525(+) CCTAG(A/C)AAGTT intron-variant
rs1000207817 -- 79,456,177(+) GTCAC(A/T)GAGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv607659 CNV gain 21841781
nsv428175 CNV gain 18775914
esv2764028 CNV gain+loss 21179565

Relevant External Links for MAGI2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI2-AS3 Gene

Disorders for MAGI2-AS3 Gene

Relevant External Links for MAGI2-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MAGI2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS3 Gene

Publications for MAGI2-AS3 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 60
  2. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 60
  3. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 60
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for MAGI2-AS3 Gene

Sources for MAGI2-AS3 Gene

Loading form....