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Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3 5
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

Regulatory Elements for MAGI2-AS3 Gene

Promoters for MAGI2-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAGI2-AS3 Gene

Chromosome:
7
Start:
79,452,877 bp from pter
End:
79,471,208 bp from pter
Size:
18,332 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS3 Gene

Genes around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains & Families for MAGI2-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways & Interactions for MAGI2-AS3 Gene

SuperPathways for MAGI2-AS3 Gene

No Data Available

Interacting Proteins for MAGI2-AS3 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI2-AS3 Gene

Drugs & Compounds for MAGI2-AS3 Gene

No Compound Related Data Available

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

(9) Additional mRNA sequences :
(26) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS3 Gene

MAGI2 antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

No ASD Table

Relevant External Links for MAGI2-AS3 Gene

GeneLoc Exon Structure for
MAGI2-AS3
ECgene alternative splicing isoforms for
MAGI2-AS3

Expression for MAGI2-AS3 Gene

mRNA expression in normal human tissues for MAGI2-AS3 Gene

SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene Hs.31474

genes like me logo Genes that share expression patterns with MAGI2-AS3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MAGI2-AS3 Gene

Orthologs for MAGI2-AS3 Gene

Evolution for MAGI2-AS3 Gene

ENSEMBL:
Gene Tree for MAGI2-AS3 (if available)
TreeFam:
Gene Tree for MAGI2-AS3 (if available)

No data available for Orthologs for MAGI2-AS3 Gene

Paralogs for MAGI2-AS3 Gene

No data available for Paralogs for MAGI2-AS3 Gene

Variants for MAGI2-AS3 Gene

Sequence variations from dbSNP and Humsavar for MAGI2-AS3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs140713 -- 79,459,030(+) TAGTT(-/CTGT/TGTC)TGTGG intron-variant
rs2365419 -- 79,469,957(+) TTTGG(G/T)GGAAT intron-variant
rs3028949 -- 79,467,252(+) atata(-/TA)aAATG intron-variant, nc-transcript-variant
rs4727868 -- 79,461,511(+) ATACT(A/C)TTTTA intron-variant, nc-transcript-variant
rs4727869 -- 79,461,824(+) GCTAC(C/T)GGAAC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv888512 CNV Loss 21882294
nsv888515 CNV Loss 21882294
dgv7348n71 CNV Loss 21882294
nsv428175 CNV Gain 18775914

Relevant External Links for MAGI2-AS3 Gene

HapMap Linkage Disequilibrium report
MAGI2-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI2-AS3 Gene

Disorders for MAGI2-AS3 Gene

Relevant External Links for MAGI2-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI2-AS3

No disorders were found for MAGI2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS3 Gene

Publications for MAGI2-AS3 Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim Y.C. … Wang S.M. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 67
  2. Fine expression profiling of full-length transcripts using a size- unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M. … Kato S. (DNA Res. 2008) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3

Products for MAGI2-AS3 Gene

Sources for MAGI2-AS3 Gene

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