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Aliases for MAGI2-AS3 Gene

Subcategory (RNA class) for MAGI2-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI2-AS3 Gene

  • MAGI2 Antisense RNA 3 2 3 5
  • MAGI2 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for MAGI2-AS3 Gene

Previous GeneCards Identifiers for MAGI2-AS3 Gene

  • GC07P079084

Summaries for MAGI2-AS3 Gene

GeneCards Summary for MAGI2-AS3 Gene

MAGI2-AS3 (MAGI2 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS3 Gene

Genomics for MAGI2-AS3 Gene

Regulatory Elements for MAGI2-AS3 Gene

Enhancers for MAGI2-AS3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for MAGI2-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAGI2-AS3 Gene

Chromosome:
7
Start:
79,452,877 bp from pter
End:
79,471,208 bp from pter
Size:
18,332 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS3 Gene

Genes around MAGI2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS3 Gene

Proteins for MAGI2-AS3 Gene

Post-translational modifications for MAGI2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS3 Gene

Domains & Families for MAGI2-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS3 Gene

Function for MAGI2-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS3 Gene

Localization for MAGI2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAGI2-AS3 Gene

Pathways & Interactions for MAGI2-AS3 Gene

SuperPathways for MAGI2-AS3 Gene

No Data Available

Interacting Proteins for MAGI2-AS3 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI2-AS3 Gene

Drugs & Compounds for MAGI2-AS3 Gene

No Compound Related Data Available

Transcripts for MAGI2-AS3 Gene

mRNA/cDNA for MAGI2-AS3 Gene

(9) Additional mRNA sequences :
(26) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS3 Gene

MAGI2 antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS3 Gene

No ASD Table

Relevant External Links for MAGI2-AS3 Gene

GeneLoc Exon Structure for
MAGI2-AS3
ECgene alternative splicing isoforms for
MAGI2-AS3

Expression for MAGI2-AS3 Gene

mRNA expression in normal human tissues for MAGI2-AS3 Gene

SOURCE GeneReport for Unigene cluster for MAGI2-AS3 Gene Hs.31474

genes like me logo Genes that share expression patterns with MAGI2-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MAGI2-AS3 Gene

Orthologs for MAGI2-AS3 Gene

Evolution for MAGI2-AS3 Gene

ENSEMBL:
Gene Tree for MAGI2-AS3 (if available)
TreeFam:
Gene Tree for MAGI2-AS3 (if available)

No data available for Orthologs for MAGI2-AS3 Gene

Paralogs for MAGI2-AS3 Gene

No data available for Paralogs for MAGI2-AS3 Gene

Variants for MAGI2-AS3 Gene

Sequence variations from dbSNP and Humsavar for MAGI2-AS3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs980354 -- 79,465,960(+) TTTAT(A/G)TAATT intron-variant, nc-transcript-variant
rs1055056 -- 79,460,431(+) CATCT(C/T)AAAAA intron-variant, nc-transcript-variant
rs6950987 -- 79,456,666(+) GTGGG(C/T)AGGGG intron-variant
rs6957474 -- 79,458,308(+) CCTTC(G/T)CTCAC intron-variant
rs6964015 -- 79,463,836(+) ATTAC(A/G)TTTAT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv888512 CNV Loss 21882294
nsv888515 CNV Loss 21882294
dgv7348n71 CNV Loss 21882294
nsv428175 CNV Gain 18775914

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for MAGI2-AS3 Gene

Disorders for MAGI2-AS3 Gene

Relevant External Links for MAGI2-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI2-AS3

No disorders were found for MAGI2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS3 Gene

Publications for MAGI2-AS3 Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim Y.C. … Wang S.M. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 67
  2. Fine expression profiling of full-length transcripts using a size- unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M. … Kato S. (DNA Res. 2008) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3

Products for MAGI2-AS3 Gene

Sources for MAGI2-AS3 Gene

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