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Aliases for MAGI2-AS2 Gene

Subcategory (RNA class) for MAGI2-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI2-AS2 Gene

  • MAGI2 Antisense RNA 2 2 3 5
  • MAGI2 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for MAGI2-AS2 Gene

Previous GeneCards Identifiers for MAGI2-AS2 Gene

  • GC00U933420
  • GC07P078639

Summaries for MAGI2-AS2 Gene

GeneCards Summary for MAGI2-AS2 Gene

MAGI2-AS2 (MAGI2 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI2-AS2 Gene

Genomics for MAGI2-AS2 Gene

Regulatory Elements for MAGI2-AS2 Gene

Enhancers for MAGI2-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F079055 0.2 ENCODE 11.2 +47.0 47004 0.3 NRF1 ZNF384 MAGI2-AS2 RNU6-337P LOC100421387
GH07F079056 0.6 ENCODE 11.2 +47.3 47272 0.2 NRF1 ZNF384 MAGI2-AS2 RNU6-337P LOC100421387
GH07F078983 0.6 FANTOM5 11 -24.8 -24834 0.4 MAGI2-AS2 MAGI2 MAGI2-AS1
GH07F078852 0.2 ENCODE 10.6 -155.0 -155000 2.7 ZNF384 MAGI2-AS2 MAGI2-AS1 GC07P078753
GH07F078782 0.9 FANTOM5 10.5 -226.1 -226066 0.2 CUX1 MAGI2-AS2 GC07P078753 MAGI2-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MAGI2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAGI2-AS2 Gene

Chromosome:
7
Start:
79,008,988 bp from pter
End:
79,012,277 bp from pter
Size:
3,290 bases
Orientation:
Plus strand

Genomic View for MAGI2-AS2 Gene

Genes around MAGI2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI2-AS2 Gene

Proteins for MAGI2-AS2 Gene

Post-translational modifications for MAGI2-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI2-AS2 Gene

Domains & Families for MAGI2-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI2-AS2 Gene

Function for MAGI2-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI2-AS2 Gene

Localization for MAGI2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAGI2-AS2 Gene

Pathways & Interactions for MAGI2-AS2 Gene

SuperPathways for MAGI2-AS2 Gene

No Data Available

Interacting Proteins for MAGI2-AS2 Gene

Gene Ontology (GO) - Biological Process for MAGI2-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI2-AS2 Gene

Transcripts for MAGI2-AS2 Gene

mRNA/cDNA for MAGI2-AS2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI2-AS2 Gene

MAGI2 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI2-AS2 Gene

No ASD Table

Relevant External Links for MAGI2-AS2 Gene

GeneLoc Exon Structure for
MAGI2-AS2
ECgene alternative splicing isoforms for
MAGI2-AS2

Expression for MAGI2-AS2 Gene

mRNA expression in normal human tissues for MAGI2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for MAGI2-AS2 Gene

This gene is overexpressed in Testis (x37.2).

SOURCE GeneReport for Unigene cluster for MAGI2-AS2 Gene:

Hs.128252
genes like me logo Genes that share expression patterns with MAGI2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MAGI2-AS2 Gene

Orthologs for MAGI2-AS2 Gene

Evolution for MAGI2-AS2 Gene

ENSEMBL:
Gene Tree for MAGI2-AS2 (if available)
TreeFam:
Gene Tree for MAGI2-AS2 (if available)

No data available for Orthologs for MAGI2-AS2 Gene

Paralogs for MAGI2-AS2 Gene

No data available for Paralogs for MAGI2-AS2 Gene

Variants for MAGI2-AS2 Gene

Sequence variations from dbSNP and Humsavar for MAGI2-AS2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10215372 -- 79,008,770(+) TTTAC(A/T)TCTCC intron-variant, upstream-variant-2KB
rs10255787 -- 79,011,932(+) TTCTT(C/T)CTTTC intron-variant
rs10255893 -- 79,011,959(+) ttctt(C/T)cttcc intron-variant
rs10674392 -- 79,010,236(+) TATGT(-/ATGT)GTGAT intron-variant
rs10808175 -- 79,008,029(+) AAGAT(A/G)ACTTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MAGI2-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv471642 CNV loss 15918152
nsv521257 CNV loss 19592680
nsv5803 CNV insertion 18451855
nsv607659 CNV gain 21841781
nsv831040 CNV gain 17160897

Relevant External Links for MAGI2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI2-AS2 Gene

Disorders for MAGI2-AS2 Gene

Relevant External Links for MAGI2-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI2-AS2

No disorders were found for MAGI2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI2-AS2 Gene

Publications for MAGI2-AS2 Gene

No publications were found for MAGI2-AS2 Gene.

Products for MAGI2-AS2 Gene

Sources for MAGI2-AS2 Gene

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