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Aliases for MAGI1-IT1 Gene

Subcategory (RNA class) for MAGI1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI1-IT1 Gene

  • MAGI1 Intronic Transcript 1 2 3 5
  • MAGI1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MAGI1-IT1 Gene

Summaries for MAGI1-IT1 Gene

GeneCards Summary for MAGI1-IT1 Gene

MAGI1-IT1 (MAGI1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MAGI1-IT1 include Retinitis Pigmentosa 11.

Additional gene information for MAGI1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI1-IT1 Gene

Genomics for MAGI1-IT1 Gene

Regulatory Elements for MAGI1-IT1 Gene

Enhancers for MAGI1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H066073 0.8 ENCODE 10.9 -119.4 -119424 1 ELF3 FOXA2 RAD21 RARA YY1 MIXL1 CEBPB KAT8 NFIL3 MIER3 MAGI1-IT1 MAGI1 SLC25A26
GH03H065951 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +0.1 105 5.8 FOXA2 ATF1 ARID4B SIN3A YY1 FOS SP5 ZHX2 PPARG KAT8 MAGI1 MAGI1-IT1 MAGI1-AS1
GH03H065948 1.1 Ensembl ENCODE dbSUPER 0.7 +4.8 4816 3.3 OSR2 PRDM6 POLR2A ZNF366 ZNF341 GLIS1 JUN BCL6B NR2F2 MAGI1-AS1 MAGI1 MAGI1-IT1
GH03H065963 1.3 Ensembl ENCODE dbSUPER 0.4 -9.5 -9487 2 TBL1XR1 NFIB INSM2 BATF EGR1 FOS ATF7 ETV6 RUNX3 CREM MAGI1-IT1 ENSG00000202071 GC03M066004
GH03H065924 1.4 FANTOM5 ENCODE dbSUPER 0.3 +29.5 29464 1.9 ELF3 PKNOX1 FOXA2 ARNT FEZF1 THRB ZSCAN9 ZNF121 CREM MIXL1 MAGI1-AS1 MAGI1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAGI1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAGI1-IT1 Gene

Genomic Locations for MAGI1-IT1 Gene
chr3:65,872,815-65,954,558
(GRCh38/hg38)
Size:
81,744 bases
Orientation:
Minus strand
chr3:65,858,489-65,940,233
(GRCh37/hg19)

Genomic View for MAGI1-IT1 Gene

Genes around MAGI1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for MAGI1-IT1 Gene

Proteins for MAGI1-IT1 Gene

Post-translational modifications for MAGI1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI1-IT1 Gene

Domains & Families for MAGI1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI1-IT1 Gene

Function for MAGI1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI1-IT1 Gene

Localization for MAGI1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI1-IT1 Gene

Pathways & Interactions for MAGI1-IT1 Gene

SuperPathways for MAGI1-IT1 Gene

No Data Available

Interacting Proteins for MAGI1-IT1 Gene

Gene Ontology (GO) - Biological Process for MAGI1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI1-IT1 Gene

Drugs & Compounds for MAGI1-IT1 Gene

No Compound Related Data Available

Transcripts for MAGI1-IT1 Gene

mRNA/cDNA for MAGI1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI1-IT1 Gene

No ASD Table

Relevant External Links for MAGI1-IT1 Gene

GeneLoc Exon Structure for
MAGI1-IT1
ECgene alternative splicing isoforms for
MAGI1-IT1

Expression for MAGI1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAGI1-IT1 Gene

mRNA expression in normal human tissues for MAGI1-IT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MAGI1-IT1 Gene:

MAGI1-IT1
genes like me logo Genes that share expression patterns with MAGI1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI1-IT1 Gene

Orthologs for MAGI1-IT1 Gene

Evolution for MAGI1-IT1 Gene

ENSEMBL:
Gene Tree for MAGI1-IT1 (if available)
TreeFam:
Gene Tree for MAGI1-IT1 (if available)

No data available for Orthologs for MAGI1-IT1 Gene

Paralogs for MAGI1-IT1 Gene

No data available for Paralogs for MAGI1-IT1 Gene

Variants for MAGI1-IT1 Gene

Sequence variations from dbSNP and Humsavar for MAGI1-IT1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs112131957 -- 65,878,752(+) TCTGC(C/G/T)GGTTA intron-variant
rs113698289 -- 65,882,166(+) GATGT(A/C/G)AGTTT intron-variant
rs113764261 -- 65,922,357(+) GTCAT(A/C/G)ATGAA intron-variant
rs141988916 -- 65,885,174(+) TGGGC(A/C/T)GATCA intron-variant
rs142001215 -- 65,952,026(+) AAGTC(A/C/G)TAAGT intron-variant

Relevant External Links for MAGI1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MAGI1-IT1 Gene

Disorders for MAGI1-IT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MAGI1-IT1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for MAGI1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI1-IT1
genes like me logo Genes that share disorders with MAGI1-IT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAGI1-IT1 Gene

Publications for MAGI1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for MAGI1-IT1 Gene

Sources for MAGI1-IT1 Gene

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