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Aliases for MAGI1-IT1 Gene

Subcategory (RNA class) for MAGI1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI1-IT1 Gene

  • MAGI1 Intronic Transcript 1 2 3 5
  • MAGI1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MAGI1-IT1 Gene

Summaries for MAGI1-IT1 Gene

GeneCards Summary for MAGI1-IT1 Gene

MAGI1-IT1 (MAGI1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MAGI1-IT1 include Retinitis Pigmentosa 11.

Additional gene information for MAGI1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI1-IT1 Gene

Genomics for MAGI1-IT1 Gene

GeneHancer (GH) Regulatory Elements for MAGI1-IT1 Gene

Promoters and enhancers for MAGI1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I065951 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.1 105 5.8 FOXA2 ARID4B NEUROD1 SIN3A ZNF48 YY1 ZNF143 FOS RXRA SP5 MAGI1-IT1 MAGI1 MAGI1-AS1
GH03I066073 Enhancer 0.8 ENCODE 10.9 -119.4 -119423 1 ELF3 FOXA2 RAD21 RARA YY1 MIXL1 RXRA CEBPB KAT8 NFIL3 MAGI1-IT1 MAGI1 SLC25A26
GH03I065948 Enhancer 1 Ensembl ENCODE dbSUPER 0.8 +4.8 4816 3.3 CTCF ZNF189 JUN NR2F2 OSR2 PRDM6 POLR2A ZNF366 ZNF341 BCL6B MAGI1-AS1 MAGI1 MAGI1-IT1
GH03I065963 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -9.5 -9487 2 NFIB INSM2 BATF IRF4 EGR1 ATF7 ETV6 FOS IKZF2 RUNX3 MAGI1-IT1 ENSG00000202071 GC03M066004 MAGI1
GH03I065946 Enhancer 0.9 Ensembl dbSUPER 0.4 +8.2 8157 0.8 FOXA2 MAX RAD21 YY1 ZNF157 ZNF600 RXRA HLF REST GABPA MAGI1-IT1 MAGI1-AS1 MAGI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MAGI1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MAGI1-IT1 Gene

Genomic Locations for MAGI1-IT1 Gene
chr3:65,872,815-65,954,558
(GRCh38/hg38)
Size:
81,744 bases
Orientation:
Minus strand
chr3:65,858,489-65,940,233
(GRCh37/hg19)

Genomic View for MAGI1-IT1 Gene

Genes around MAGI1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for MAGI1-IT1 Gene

Proteins for MAGI1-IT1 Gene

Post-translational modifications for MAGI1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI1-IT1 Gene

Domains & Families for MAGI1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI1-IT1 Gene

Function for MAGI1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI1-IT1 Gene

Localization for MAGI1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI1-IT1 Gene

Pathways & Interactions for MAGI1-IT1 Gene

SuperPathways for MAGI1-IT1 Gene

No Data Available

Interacting Proteins for MAGI1-IT1 Gene

Gene Ontology (GO) - Biological Process for MAGI1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI1-IT1 Gene

Drugs & Compounds for MAGI1-IT1 Gene

No Compound Related Data Available

Transcripts for MAGI1-IT1 Gene

mRNA/cDNA for MAGI1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI1-IT1 Gene

No ASD Table

Relevant External Links for MAGI1-IT1 Gene

GeneLoc Exon Structure for
MAGI1-IT1
ECgene alternative splicing isoforms for
MAGI1-IT1

Expression for MAGI1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAGI1-IT1 Gene

mRNA expression in normal human tissues for MAGI1-IT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MAGI1-IT1 Gene:

MAGI1-IT1
genes like me logo Genes that share expression patterns with MAGI1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI1-IT1 Gene

Orthologs for MAGI1-IT1 Gene

Evolution for MAGI1-IT1 Gene

ENSEMBL:
Gene Tree for MAGI1-IT1 (if available)
TreeFam:
Gene Tree for MAGI1-IT1 (if available)

No data available for Orthologs for MAGI1-IT1 Gene

Paralogs for MAGI1-IT1 Gene

No data available for Paralogs for MAGI1-IT1 Gene

Variants for MAGI1-IT1 Gene

Additional Variant Information for MAGI1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MAGI1-IT1 Gene

Disorders for MAGI1-IT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MAGI1-IT1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MAGI1-IT1

genes like me logo Genes that share disorders with MAGI1-IT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MAGI1-IT1 Gene

Publications for MAGI1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for MAGI1-IT1 Gene

Sources for MAGI1-IT1 Gene

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