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Aliases for MAGI1-AS1 Gene

Subcategory (RNA class) for MAGI1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI1-AS1 Gene

  • MAGI1 Antisense RNA 1 2 3 5
  • MAGI1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MAGI1-AS1 Gene

Previous GeneCards Identifiers for MAGI1-AS1 Gene

  • GC00U933344

Summaries for MAGI1-AS1 Gene

GeneCards Summary for MAGI1-AS1 Gene

MAGI1-AS1 (MAGI1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MAGI1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI1-AS1 Gene

Genomics for MAGI1-AS1 Gene

Regulatory Elements for MAGI1-AS1 Gene

Enhancers for MAGI1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H065924 1.4 FANTOM5 ENCODE dbSUPER 11.5 +31.3 31279 1 ELF3 PKNOX1 FOXA2 ARNT FEZF1 THRB ZSCAN9 ZNF121 CREM MIXL1 MAGI1-AS1 MAGI1-IT1
GH03H065927 1.1 ENCODE dbSUPER 11.5 +34.2 34185 1 SOX13 PKNOX1 FOXA2 SAP130 MAX ZIC2 KMT2B RAD21 ZNF7 YY1 MAGI1-AS1 MAGI1-IT1
GH03H065948 1.1 Ensembl ENCODE dbSUPER 11.1 +55.9 55927 3 OSR2 PRDM6 POLR2A ZNF366 ZNF341 GLIS1 JUN BCL6B NR2F2 MAGI1-AS1 MAGI1 MAGI1-IT1
GH03H065854 0.7 ENCODE 11.2 -38.9 -38890 1 HLF FEZF1 PPARG FOXA1 NFIL3 GATA3 POLR2A IKZF1 CEBPA ZSCAN5C MAGI1-AS1 GC03P065843
GH03H065855 0.7 ENCODE 11.2 -37.9 -37861 0 HLF CEBPB MAX CEBPG ZNF644 YY1 TEAD3 JUND ATF3 CEBPA MAGI1-AS1 GC03P065843
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MAGI1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAGI1-AS1 Gene

Chromosome:
3
Start:
65,893,816 bp from pter
End:
65,925,297 bp from pter
Size:
31,482 bases
Orientation:
Plus strand

Genomic View for MAGI1-AS1 Gene

Genes around MAGI1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI1-AS1 Gene

Proteins for MAGI1-AS1 Gene

Post-translational modifications for MAGI1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI1-AS1 Gene

Domains & Families for MAGI1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI1-AS1 Gene

Function for MAGI1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MAGI1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI1-AS1 Gene

Localization for MAGI1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MAGI1-AS1 Gene

Pathways & Interactions for MAGI1-AS1 Gene

SuperPathways for MAGI1-AS1 Gene

No Data Available

Interacting Proteins for MAGI1-AS1 Gene

Gene Ontology (GO) - Biological Process for MAGI1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI1-AS1 Gene

Drugs & Compounds for MAGI1-AS1 Gene

No Compound Related Data Available

Transcripts for MAGI1-AS1 Gene

mRNA/cDNA for MAGI1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI1-AS1 Gene

MAGI1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MAGI1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI1-AS1 Gene

No ASD Table

Relevant External Links for MAGI1-AS1 Gene

GeneLoc Exon Structure for
MAGI1-AS1
ECgene alternative splicing isoforms for
MAGI1-AS1

Expression for MAGI1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MAGI1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MAGI1-AS1 Gene

This gene is overexpressed in Testis (x12.4), Brain - Cerebellum (x4.4), and Brain - Cerebellar Hemisphere (x4.1).

SOURCE GeneReport for Unigene cluster for MAGI1-AS1 Gene:

Hs.663889
genes like me logo Genes that share expression patterns with MAGI1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MAGI1-AS1 Gene

Orthologs for MAGI1-AS1 Gene

Evolution for MAGI1-AS1 Gene

ENSEMBL:
Gene Tree for MAGI1-AS1 (if available)
TreeFam:
Gene Tree for MAGI1-AS1 (if available)

No data available for Orthologs for MAGI1-AS1 Gene

Paralogs for MAGI1-AS1 Gene

No data available for Paralogs for MAGI1-AS1 Gene

Variants for MAGI1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAGI1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000021455 -- 65,908,652(+) CTCCA(G/T)GAAAT intron-variant
rs1000075494 -- 65,909,170(+) CTCTT(C/T)CCGTA intron-variant
rs1000186561 -- 65,921,133(+) TGCAA(A/C)CATAT intron-variant
rs1000206673 -- 65,915,709(+) TCCAT(A/G)TGCTT intron-variant
rs1000452338 -- 65,895,126(+) CATAA(G/T)CTGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4769n100 CNV gain 25217958
esv3575576 CNV gain 25503493
esv3596429 CNV loss 21293372
nsv1000854 CNV loss 25217958
nsv1006381 CNV gain 25217958
nsv1012099 CNV gain 25217958
nsv460697 CNV loss 19166990
nsv507100 OTHER sequence alteration 20534489
nsv590546 CNV gain 21841781
nsv590548 CNV loss 21841781
nsv590549 CNV loss 21841781

Relevant External Links for MAGI1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI1-AS1 Gene

Disorders for MAGI1-AS1 Gene

Relevant External Links for MAGI1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI1-AS1

No disorders were found for MAGI1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI1-AS1 Gene

Publications for MAGI1-AS1 Gene

No publications were found for MAGI1-AS1 Gene.

Products for MAGI1-AS1 Gene

Sources for MAGI1-AS1 Gene

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