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Aliases for MAGI1-AS1 Gene

Subcategory (RNA class) for MAGI1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MAGI1-AS1 Gene

  • MAGI1 Antisense RNA 1 2 3 5
  • MAGI1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MAGI1-AS1 Gene

Previous GeneCards Identifiers for MAGI1-AS1 Gene

  • GC00U933344

Summaries for MAGI1-AS1 Gene

GeneCards Summary for MAGI1-AS1 Gene

MAGI1-AS1 (MAGI1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGI1-AS1 Gene

Genomics for MAGI1-AS1 Gene

Regulatory Elements for MAGI1-AS1 Gene

Enhancers for MAGI1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F065845 0.3 FANTOM5 11.8 -48.3 -48342 0.3 MAGI1-AS1 GC03P065843
GH03F065924 0.9 FANTOM5 ENCODE 11.5 +31.3 31279 1.9 ELF3 SOX13 PKNOX1 ESRRA FEZF1 THRB ZSCAN9 ZIC2 ZNF121 GATA3 MAGI1-AS1 MAGI1-IT1
GH03F065927 0.8 Ensembl ENCODE 11.5 +34.2 34185 1.4 SOX13 CTCF PKNOX1 SAP130 ZIC2 RAD21 ZNF7 YY1 SCRT2 PRDM10 MAGI1-AS1 MAGI1-IT1
GH03F065833 0.9 Ensembl ENCODE 11.3 -59.7 -59692 1.1 JUND MAGI1-AS1 RPL17P17 LOC105377130
GH03F065836 0.6 Ensembl 11.3 -57.6 -57616 0.4 JUN PRDM10 ZNF548 ZNF600 ATF2 MAGI1-AS1 RPL17P17 LOC105377130
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MAGI1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MAGI1-AS1 Gene

Chromosome:
3
Start:
65,893,816 bp from pter
End:
65,925,297 bp from pter
Size:
31,482 bases
Orientation:
Plus strand

Genomic View for MAGI1-AS1 Gene

Genes around MAGI1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGI1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGI1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGI1-AS1 Gene

Proteins for MAGI1-AS1 Gene

Post-translational modifications for MAGI1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MAGI1-AS1 Gene

Domains & Families for MAGI1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MAGI1-AS1 Gene

Function for MAGI1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MAGI1-AS1 Gene

Localization for MAGI1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MAGI1-AS1 Gene

Pathways & Interactions for MAGI1-AS1 Gene

SuperPathways for MAGI1-AS1 Gene

No Data Available

Interacting Proteins for MAGI1-AS1 Gene

Gene Ontology (GO) - Biological Process for MAGI1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MAGI1-AS1 Gene

Transcripts for MAGI1-AS1 Gene

mRNA/cDNA for MAGI1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGI1-AS1 Gene

MAGI1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGI1-AS1 Gene

No ASD Table

Relevant External Links for MAGI1-AS1 Gene

GeneLoc Exon Structure for
MAGI1-AS1
ECgene alternative splicing isoforms for
MAGI1-AS1

Expression for MAGI1-AS1 Gene

mRNA expression in normal human tissues for MAGI1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MAGI1-AS1 Gene

This gene is overexpressed in Testis (x12.4), Brain - Cerebellum (x4.4), and Brain - Cerebellar Hemisphere (x4.1).

SOURCE GeneReport for Unigene cluster for MAGI1-AS1 Gene:

Hs.663889
genes like me logo Genes that share expression patterns with MAGI1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MAGI1-AS1 Gene

Orthologs for MAGI1-AS1 Gene

Evolution for MAGI1-AS1 Gene

ENSEMBL:
Gene Tree for MAGI1-AS1 (if available)
TreeFam:
Gene Tree for MAGI1-AS1 (if available)

No data available for Orthologs for MAGI1-AS1 Gene

Paralogs for MAGI1-AS1 Gene

No data available for Paralogs for MAGI1-AS1 Gene

Variants for MAGI1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MAGI1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10446494 -- 65,910,608(+) TCTGA(A/G)AAAAG intron-variant
rs10446495 -- 65,912,534(+) TAACA(A/C)AAAAA intron-variant
rs10575249 -- 65,919,680(+) CTCCT(-/TCTC)TCTCT intron-variant
rs111373651 -- 65,918,003(+) AATGG(A/G)GGAGG intron-variant
rs111474133 -- 65,898,224(+) TTCTC(A/C)CCAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGI1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4769n100 CNV gain 25217958
esv3575576 CNV gain 25503493
esv3596429 CNV loss 21293372
nsv1000854 CNV loss 25217958
nsv1006381 CNV gain 25217958
nsv1012099 CNV gain 25217958
nsv460697 CNV loss 19166990
nsv507100 OTHER sequence alteration 20534489
nsv590546 CNV gain 21841781
nsv590548 CNV loss 21841781
nsv590549 CNV loss 21841781

Relevant External Links for MAGI1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGI1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MAGI1-AS1 Gene

Disorders for MAGI1-AS1 Gene

Relevant External Links for MAGI1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGI1-AS1

No disorders were found for MAGI1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MAGI1-AS1 Gene

Publications for MAGI1-AS1 Gene

No publications were found for MAGI1-AS1 Gene.

Products for MAGI1-AS1 Gene

Sources for MAGI1-AS1 Gene

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