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Aliases & Descriptions for MAGI1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AIP3 1 , 2 , 3 BAIAP1 2 , 3 , 5 BAP-1 3 BAP1 1 , 2 , 3 MAGI-1 1 , 2 , 3 TNRC19 1 , 2 , 3 , 5 WWP3 1 , 2 , 3 , 5
Descriptions Atrophin-1-interacting protein 3 3 BAI1-associated protein 1 1 , 2 , 3 Membrane-associated guanylate kinase inverted 1 3 Trinucleotide repeat-containing gene 19 protein 3 WW domain-containing protein 3 2 , 3 atrophin-1 interacting protein 3 2 membrane associated guanylate kinase inverted-1 2 membrane associated guanylate kinase, WW and PDZ domain containing 1 2 trinucleotide repeat-containing gene 19 2
Search outside databases for aliases for MAGI1 genePrevious GC identifers: GC06M154757 GC06M154818
Summaries for MAGI1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for MAGI1 : The protein encoded by this gene is a member of the membrane-associated guanylate kinase homologue(MAGUK) family. MAGUK proteins participate in the assembly of multiprotein complexes on the innersurface of the plasma membrane at regions of cell-cell contact. The product of this gene may playa role as scaffolding protein at cell-cell junctions. Alternatively spliced transcript variantsencoding different isoforms have been identified. [provided by RefSeq] UniProtKB/Swiss-Prot: MAGI1_HUMAN, Q96QZ7 Function : May play a role as scaffolding protein at cell-cell junctions. May regulate acid-inducedACCN3 currents by modulating its expression at the cell surface (By similarity)
Gene Wiki entry for MAGI1
Genomic Location for MAGI1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the MAGI1 gene Entrez Gene cytogenetic band: 3p14.1 Ensembl cytogenetic band: 6q25.2 HGNC cytogenetic band: 3p14.1 MAGI1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M065318:
(about GC identifiers )
Start:
65,314,946 bp from pter
End:
65,999,549 bp from pter
Size:
684,604 bases
Orientation:
minus strand
1 alternative location : Chr 6- 154,768,003-154,873,445
RefSeq DNA sequence: NC_000003.10 NT_022517.17 Proteins for MAGI1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MAGI1_HUMAN, Q96QZ7 (See
protein sequence )Recommended Name: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 Size : 1491 amino acids; 164641 Da
Subunit : Interacts through its WW 2 domain with SYNPO and through its PDZ 5 domain with ACTN4.Interacts with cytoplasmic domain of BAI1. Interacts via its WW domains with DRPLA. Interacts withESAM, LRP2 and CXADR. May interact with CTNNB1. Interacts through its PDZ 1 domain with NET1 (Bysimilarity). Interacts with ACCN3 and AMOT. Interacts with FCHSD2. Interacts with IGSF5/JAM4 andthrough its PDZ 2 and 3 domains with NPHS1 forming a tripartite complex (By similarity). Interactswith DDN
Subcellular location : Cell junction, tight junction. Cell membrane; Peripheral membrane protein.Note=Localizes to epithelial cells tight junctions
PDB structures from and Proteopedia : 2Q9V (3D)
 2R4H (3D)
 2YSD (3D)
 2YSE (3D)
 2ZAJ (3D)
 3BPU (3D)
 
Secondary accessions : O00309 O43863 O75085 Q96QZ8 Q96QZ9Alternative splicing : 7 isoforms : Q96QZ7-1 Q96QZ7-2 Q96QZ7-3 Q96QZ7-4 Q96QZ7-5 Q96QZ7-6 Q96QZ7-7 (Additional isoforms seem to exist)
Post-translational modifications:
Phosphorylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001028229.1 NP_004733.2 NP_056335.1 ENSEMBL proteins: ENSP00000356182 ENSP00000356178 ENSP00000356173 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for MAGI1: Assays for MAGI1:
Protein
Domains/ Families for MAGI1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96QZ7 ProtoNet protein and cluster: Q96QZ7
1 Blocks protein family : IPB001478 PDZ/DHR/GLGF domain UniProtKB/Swiss-Prot: MAGI1_HUMAN, Q96QZ7 Similarity : Contains 1 guanylate kinase-like domainSimilarity : Contains 6 PDZ (DHR) domainsSimilarity : Contains 2 WW domains
Gene Function for MAGI1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004742 Applied Biosystems Silencer ® siRNAs for MAGI1 Sigma-Aldrich siRNA and siRNA Panels for MAGI1 Sigma-Aldrich shRNA Panels and shRNA for MAGI1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033057                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033057                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001033057  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001033057 UniProtKB/Swiss-Prot: MAGI1_HUMAN, Q96QZ7 Function : May play a role as scaffolding protein at cell-cell junctions. May regulate acid-inducedACCN3 currents by modulating its expression at the cell surface (By similarity)
2 MGI phenotypic alleles for Magi1 (no phenotypes)3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for MAGI1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for MAGI1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for MAGI1 5/12 Interacting proteins for MAGI1 (Q96QZ7 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 12
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for MAGI1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for MAGI1 1 Novoseek chemical compound relationship for MAGI1 gene
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Transcripts for MAGI1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004742 Sigma-Aldrich siRNA and siRNA Panels for MAGI1 Sigma-Aldrich shRNA Panels and shRNA for MAGI1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001033057 NM_004742 NM_015520
REFSEQ mRNAs for MAGI1 gene (3 alternative transcripts): NM_001033057.1 NM_004742.2 NM_015520.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001033057 NM_004742 NM_015520
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033057                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001033057                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001033057  
Additional cDNA sequence: AB010894.1 AF088016.1 AF401654.1 AF401655.1 AF401656.1 AK023358.1 AK127518.1 AK289803.1 AK307794.1 AK310365.1 AL050184.1 BC062367.1 U80754.1 U96115.1
15 DOTS entries : DT.101959433 DT.100773907 DT.445868 DT.40126664 DT.40192152 DT.75149176 DT.97777599 DT.40207108 DT.40293603 DT.100725658 DT.91837245 DT.99959483 DT.40237242 DT.95304665 DT.95151745
24/187 AceView cDNA sequences (see all 187
):BM716032 BC062367 AI276206 AW136937 AI962678 AI130725 BM843919 BM763095 AK127518 AW615204 U80754 BM479650 BM717629 AK130632 AI424867 AF401656 AF401655 AI052089 AW241675 BG426447 CB216524 AK124433 AL044443 BQ938948
highest scoring ESTs for MAGI1 :AB010894 AA099904 BM762845 BM843919 BM844027 BQ706291 BU159638 U96115 AA026617 AA026729
Unigene Cluster for MAGI1: Membrane associated guanylate kinase, WW and PDZ domain containing 1 Hs.651939 [show with all ESTs ] Unigene Representative Sequence: NM_015520 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000367213
ENST00000367209
ENST00000367205
Expression for MAGI1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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MAGI1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for MAGI1 1 / 2 / 3
16 probe-sets matching MAGI1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAAATGTATGSOURCE GeneReport for Unigene cluster: Hs.651939 Expression variation in blood from EXPOLDB for MAGI1
UniProtKB/Swiss-Prot: MAGI1_HUMAN, Q96QZ7 Tissue specificity : Widely expressed with the exception of skeletal muscle. Isoform 1, isoform 2and isoform 6 are highly expressed in colon, kidney, lung, liver, and pancreas. Isoform 5 ispredominantly expressed in brain and heart. Isoform 3 and isoform 4 are highly expressed inpancreas and brain
Orthologs for MAGI1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for MAGI1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for MAGI1 ENSEMBL Gene Tree for MAGI1 Paralogs for MAGI1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for MAGI1 gene IPCEF1 2 CNKSR1 2 CNKSR2 2
SNPs/Variants for MAGI1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for MAGI1 (up to first 250kb)
Disorders & Mutations for MAGI1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602625 1 Novoseek disease relationship for MAGI1 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
0.00
2
10618722 (1), 17267502 (1)
About this table Human Genome Epidemiology Navigator: MAGI1 (2 documents)
Medical News for MAGI1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for MAGI1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/41 PubMed articles for MAGI1 gene (see all 41
): Cloning and characterization of BAI-associated protein 1: a PDZ domain-containing protein that interacts with BAI1. (PubMed id 9647739) 1, 2, 3, 4 Shiratsuchi T....Tokino T. (1998) MAGI-1: a widely expressed, alternatively spliced tight junction protein. (PubMed id 11969287) 1, 3, 4 Laura R.P.... Lasky L.A. (2002) Angiomotin regulates endothelial cell-cell junctions and cell motility. (PubMed id 16043488) 3, 4 Bratt A....Holmgren L. (2005) PSD-95 and Lin-7b interact with acid-sensing ion channel-3 and have opposite effects on H+- gated current. (PubMed id 15317815) 3, 4 Hruska-Hageman A.M....Welsh M.J. (2004) Carom: a novel membrane-associated guanylate kinase-interacting protein with two SH3 domains. (PubMed id 14627983) 3, 4 Ohno H.... Hata Y. (2003) Interaction of two actin-binding proteins, synaptopodin and alpha- actinin-4, with the tight junction protein MAGI-1. (PubMed id 12042308) 3, 4 Patrie K.M.... Margolis B. (2002) Atrophin-1, the DRPLA gene product, interacts with two families of WW domain-containing proteins. (PubMed id 9647693) 3, 4 Wood J.D....Ross C.A. (1998) cDNAs with long CAG trinucleotide repeats from human brain. (PubMed id 9225980) 2, 3 Margolis R.L....Ross C.A. (1997) Identification of novel human WW domain-containing proteins by cloning of ligand targets. (PubMed id 9169421) 3, 4 Pirozzi G.... Fowlkes D.M. (1997) Identification and characterization of a novel tight junction-associated family of proteins that interacts with a WW domain of MAGI-1. (PubMed id 16019084) 1, 3 Patrie K.M. (2005)
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Genome Databases showing MAGI1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing MAGI1
(According to HUGE )
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Specialized Databases showing MAGI1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for MAGI1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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