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Aliases for MAGEL2 Gene

Aliases for MAGEL2 Gene

  • Melanoma Antigen Family L2 2 3
  • Necdin-Like Protein 1 3 4
  • Protein NM15 3 4
  • MAGE-Like 2 2 3
  • NDNL1 3 4
  • SHFYNG 3
  • PWLS 3
  • NM15 3

External Ids for MAGEL2 Gene

Previous HGNC Symbols for MAGEL2 Gene

  • NDNL1

Previous GeneCards Identifiers for MAGEL2 Gene

  • GC15M021024
  • GC15M016778
  • GC15M021306
  • GC15M021436
  • GC15M021439
  • GC15M023888
  • GC15M002024

Summaries for MAGEL2 Gene

Entrez Gene Summary for MAGEL2 Gene

  • Prader-Willi syndrome (PWS) is caused by the loss of expression of imprinted genes in chromosome 15q11-q13 region. Affected individuals exhibit neonatal hypotonia, developmental delay, and childhood-onset obesity. Necdin (NDN), a gene involved in the terminal differentiation of neurons, localizes to this region of the genome and has been implicated as one of the genes responsible for the etiology of PWS. This gene is structurally similar to NDN, is also localized to the PWS chromosomal region, and is paternally imprinted, suggesting a possible role for it in PWS. [provided by RefSeq, Oct 2010]

GeneCards Summary for MAGEL2 Gene

MAGEL2 (Melanoma Antigen Family L2) is a Protein Coding gene. Diseases associated with MAGEL2 include prader-willi syndrome due to point mutation and schaaf-yang syndrome. GO annotations related to this gene include ubiquitin-protein transferase activity. An important paralog of this gene is MAGED1.

UniProtKB/Swiss-Prot for MAGEL2 Gene

  • Probably enhances ubiquitin ligase activity of RING-type zinc finger-containing E3 ubiquitin-protein ligases, possibly through recruitment and/or stabilization of the Ubl-conjugating enzyme (E2) at the E3:substrate complex. Acts as a regulator of retrograde transport via its interaction with VPS35. Recruited to retromer-containing endosomes and promotes the formation of Lys-63-linked polyubiquitin chains at Lys-220 of WASH1 together with TRIM27, leading to promote endosomal F-actin assembly (PubMed:23452853). Regulates the circadian clock by repressing the transcriptional activator activity of the CLOCK-ARNTL/BMAL1 heterodimer. Significantly promotes the cytoplasmic accumulation of CLOCK (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGEL2 Gene

Genomics for MAGEL2 Gene

Regulatory Elements for MAGEL2 Gene

Genomic Location for MAGEL2 Gene

Chromosome:
15
Start:
23,643,544 bp from pter
End:
23,647,846 bp from pter
Size:
4,303 bases
Orientation:
Minus strand

Genomic View for MAGEL2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MAGEL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGEL2 Gene

Proteins for MAGEL2 Gene

  • Protein details for MAGEL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UJ55-MAGL2_HUMAN
    Recommended name:
    MAGE-like protein 2
    Protein Accession:
    Q9UJ55
    Secondary Accessions:
    • H0YDD5

    Protein attributes for MAGEL2 Gene

    Size:
    1249 amino acids
    Molecular mass:
    132822 Da
    Quaternary structure:
    • Interacts with TRIM27. Interacts with VPS35; leading to recruitment at retromer-containing endosomes. Interacts with ARNTL/BMAL1 and PER2 (By similarity).
    Miscellaneous:
    • Imprinted, expressed from the paternal chromosome only
    SequenceCaution:
    • Sequence=AAG28577.1; Type=Frameshift; Positions=730; Evidence={ECO:0000305}; Sequence=CAB62393.1; Type=Frameshift; Positions=730; Evidence={ECO:0000305};

neXtProt entry for MAGEL2 Gene

Proteomics data for MAGEL2 Gene at MOPED

Post-translational modifications for MAGEL2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MAGEL2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MAGEL2 Gene

Domains & Families for MAGEL2 Gene

Gene Families for MAGEL2 Gene

Protein Domains for MAGEL2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for MAGEL2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UJ55

UniProtKB/Swiss-Prot:

MAGL2_HUMAN :
  • Contains 1 MAGE domain.
Domain:
  • Contains 1 MAGE domain.
genes like me logo Genes that share domains with MAGEL2: view

Function for MAGEL2 Gene

Molecular function for MAGEL2 Gene

GENATLAS Biochemistry:
melanoma antigen (MAGE)-like 2,intronless located in the PWCR region,(paternally) expressed in brain,fetal and adult,maternally imprinted
UniProtKB/Swiss-Prot Function:
Probably enhances ubiquitin ligase activity of RING-type zinc finger-containing E3 ubiquitin-protein ligases, possibly through recruitment and/or stabilization of the Ubl-conjugating enzyme (E2) at the E3:substrate complex. Acts as a regulator of retrograde transport via its interaction with VPS35. Recruited to retromer-containing endosomes and promotes the formation of Lys-63-linked polyubiquitin chains at Lys-220 of WASH1 together with TRIM27, leading to promote endosomal F-actin assembly (PubMed:23452853). Regulates the circadian clock by repressing the transcriptional activator activity of the CLOCK-ARNTL/BMAL1 heterodimer. Significantly promotes the cytoplasmic accumulation of CLOCK (By similarity).

Gene Ontology (GO) - Molecular Function for MAGEL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IMP 23452853
GO:0005515 protein binding IPI 23452853
genes like me logo Genes that share ontologies with MAGEL2: view
genes like me logo Genes that share phenotypes with MAGEL2: view

Animal Models for MAGEL2 Gene

MGI Knock Outs for MAGEL2:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for MAGEL2 Gene

Localization for MAGEL2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MAGEL2 Gene

Early endosome. Cytoplasm. Nucleus. Note=Recruited to retromer-containing endosomes via interaction with VPS35. Colocalizes with CLOCK and ARNTL/BMLA1 in the cytoplasm, and with PER2 in the cytoplasm and nucleus (By similarity). {ECO:0000250 UniProtKB:Q9QZ04, ECO:0000269 PubMed:23452853}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MAGEL2 Gene COMPARTMENTS Subcellular localization image for MAGEL2 gene
Compartment Confidence
endosome 5
nucleus 4

Gene Ontology (GO) - Cellular Components for MAGEL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS --
GO:0005768 endosome IDA 23452853
GO:0005769 early endosome IEA --
GO:0030904 colocalizes_with retromer complex IDA 23452853
genes like me logo Genes that share ontologies with MAGEL2: view

Pathways & Interactions for MAGEL2 Gene

SuperPathways for MAGEL2 Gene

No Data Available

Interacting Proteins for MAGEL2 Gene

Gene Ontology (GO) - Biological Process for MAGEL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0034314 Arp2/3 complex-mediated actin nucleation IDA 23452853
GO:0042147 retrograde transport, endosome to Golgi IDA 23452853
GO:0042752 regulation of circadian rhythm ISS --
GO:0045892 negative regulation of transcription, DNA-templated ISS --
genes like me logo Genes that share ontologies with MAGEL2: view

No data available for Pathways by source and SIGNOR curated interactions for MAGEL2 Gene

Drugs & Compounds for MAGEL2 Gene

No Compound Related Data Available

Transcripts for MAGEL2 Gene

mRNA/cDNA for MAGEL2 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(32) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGEL2 Gene

MAGE-like 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGEL2 Gene

No ASD Table

Relevant External Links for MAGEL2 Gene

GeneLoc Exon Structure for
MAGEL2
ECgene alternative splicing isoforms for
MAGEL2

Expression for MAGEL2 Gene

mRNA expression in normal human tissues for MAGEL2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MAGEL2 Gene

This gene is overexpressed in Brain - Hypothalamus (x12.3), Pituitary (x7.4), and Brain - Nucleus accumbens (basal ganglia) (x4.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for MAGEL2 Gene



SOURCE GeneReport for Unigene cluster for MAGEL2 Gene Hs.141496

mRNA Expression by UniProt/SwissProt for MAGEL2 Gene

Q9UJ55-MAGL2_HUMAN
Tissue specificity: Expressed in placenta, fetal and adult brain. Not detected in heart and small intestine, very low levels in fibroblasts. Not expressed in brain of a Prader-Willi patient.
genes like me logo Genes that share expression patterns with MAGEL2: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues and Protein tissue co-expression partners for MAGEL2 Gene

Orthologs for MAGEL2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MAGEL2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MAGEL2 35
  • 80.83 (n)
  • 76.93 (a)
MAGEL2 36
  • 40 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100684492 35
  • 85.69 (n)
  • 84.9 (a)
MAGEL2 36
  • 44 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Magel2 35
  • 73.89 (n)
  • 65.73 (a)
Magel2 16
Magel2 36
  • 32 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Magel2 35
  • 76.15 (n)
  • 68.22 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 45 (a)
ManyToMany
-- 36
  • 33 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 41 (a)
OneToMany
chicken
(Gallus gallus)
Aves MAGE 36
  • 43 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 39 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ndnl2 36
  • 39 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
OneToMany
Species with no ortholog for MAGEL2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MAGEL2 Gene

ENSEMBL:
Gene Tree for MAGEL2 (if available)
TreeFam:
Gene Tree for MAGEL2 (if available)

Paralogs for MAGEL2 Gene

genes like me logo Genes that share paralogs with MAGEL2: view

Variants for MAGEL2 Gene

Sequence variations from dbSNP and Humsavar for MAGEL2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs8920 -- 23,643,744(-) GTGTT(A/T)TAATT utr-variant-3-prime
rs9785 -- 23,643,886(-) GTGTA(A/C)GTTTG utr-variant-3-prime
rs10739 -- 23,643,841(+) AAAAA(A/T)GTACA utr-variant-3-prime
rs850814 -- 23,649,820(-) ttttt(C/T)ggact upstream-variant-2KB
rs850815 -- 23,649,598(-) caaac(A/G)gaagc upstream-variant-2KB

Variation tolerance for MAGEL2 Gene

Gene Damage Index Score: 5.13; 69.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MAGEL2 Gene

HapMap Linkage Disequilibrium report
MAGEL2
Human Gene Mutation Database (HGMD)
MAGEL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MAGEL2 Gene

Disorders for MAGEL2 Gene

MalaCards: The human disease database

(12) MalaCards diseases for MAGEL2 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, DISEASES, NovoSeek, and GeneCards

UniProtKB/Swiss-Prot

MAGL2_HUMAN
  • Schaaf-Yang syndrome (SHFYNG) [MIM:615547]: A disease characterized by clinical features of Prader-Willi syndrome, including neonatal hypotonia with poor suck, feeding problems in infancy, obesity, developmental delay, short stature, and hypogonadism. Additionally, patients manifest autism spectrum disorder. Some patients have dysmorphic facial features. Note=The disease is caused by mutations affecting the gene represented in this entry. All mutations occurred on the paternal allele.

Relevant External Links for MAGEL2

Genetic Association Database (GAD)
MAGEL2
Human Genome Epidemiology (HuGE) Navigator
MAGEL2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGEL2
genes like me logo Genes that share disorders with MAGEL2: view

No data available for Genatlas for MAGEL2 Gene

Publications for MAGEL2 Gene

  1. Regionally reduced brain volume, altered serotonin neurochemistry, and abnormal behavior in mice null for the circadian rhythm output gene Magel2. (PMID: 19199291) Mercer R.E. … Wevrick R. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2009) 23 67
  2. The Prader-Willi syndrome murine imprinting center is not involved in the spatio-temporal transcriptional regulation of the Necdin gene. (PMID: 15634360) Watrin F. … Muscatelli F. (BMC Genet. 2005) 23 67
  3. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M. … Buiting K. (Hum. Genet. 2005) 23 67
  4. Necdin-related MAGE proteins differentially interact with the E2F1 transcription factor and the p75 neurotrophin receptor. (PMID: 14593116) Kuwako K. … Yoshikawa K. (J. Biol. Chem. 2004) 23 67
  5. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M. … Buiting K. (Hum. Mol. Genet. 2001) 23 67

Products for MAGEL2 Gene

Sources for MAGEL2 Gene

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