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MAGEF1 Gene

protein-coding   GIFtS: 49
GCID: GC03M184428

Melanoma Antigen Family F, 1

  Search for MAGEF1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Melanoma Antigen Family F, 11 2
MAGE-F1 Antigen2 3
Melanoma-Associated Antigen F12

External Ids:    HGNC: 296391   Entrez Gene: 641102   Ensembl: ENSG000001773837   OMIM: 6092675   UniProtKB: Q9HAY23   

Export aliases for MAGEF1 gene to outside databases

Previous GC identifers: GC03M181388 GC03M185611 GC03M185830 GC03M185749 GC03M185910 GC03M181838


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MAGEF1 Gene:
This intronless gene encodes a member of the MAGE superfamily. It is ubiquitously expressed in normal tissues and
in tumor cells. This gene includes a microsatellite repeat in the coding region. (provided by RefSeq, Jul 2008)

GeneCards Summary for MAGEF1 Gene:
MAGEF1 (melanoma antigen family F, 1) is a protein-coding gene. An important paralog of this gene is MAGEC2.

UniProtKB/Swiss-Prot: MAGF1_HUMAN, Q9HAY2
Function: May enhance ubiquitin ligase activity of RING-type zinc finger-containing E3 ubiquitin-protein ligases.
Proposed to act through recruitment and/or stabilization of the Ubl-conjugating enzyme (E2) at the E3:substrate
complex




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NC_018914.2  NT_005612.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the MAGEF1 gene promoter:
         GATA-3   POU3F2   GATA-2   GATA-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMAGEF1 promoter sequence
   Search Chromatin IP Primers for MAGEF1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MAGEF1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q13   Ensembl cytogenetic band:  3q27.1   HGNC cytogenetic band: 3q13

MAGEF1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MAGEF1 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M184428:  view genomic region     (about GC identifiers)

Start:
184,428,155 bp from pter      End:
184,429,836 bp from pter
Size:
1,682 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MAGF1_HUMAN, Q9HAY2 (See protein sequence)
Recommended Name: Melanoma-associated antigen F1  
Size: 307 amino acids; 35222 Da
Subunit: Interacts with LNX1, TRIM27 and NSMCE1
Secondary accessions: Q9H215

Explore the universe of human proteins at neXtProt for MAGEF1: NX_Q9HAY2

Explore proteomics data for MAGEF1 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys251
  • Modification sites at PhosphoSitePlus

  • See MAGEF1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_071432.2  
    ENSEMBL proteins: 
     ENSP00000315064  

    MAGEF1 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR002190 MAGE

    Graphical View of Domain Structure for InterPro Entry Q9HAY2

    ProtoNet protein and cluster: Q9HAY2

    1 Blocks protein domain: IPB002190 MAGE protein

    UniProtKB/Swiss-Prot: MAGF1_HUMAN, Q9HAY2
    Similarity: Contains 1 MAGE domain


    Find genes that share domains with MAGEF1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MAGF1_HUMAN, Q9HAY2
    Function: May enhance ubiquitin ligase activity of RING-type zinc finger-containing E3 ubiquitin-protein ligases.
    Proposed to act through recruitment and/or stabilization of the Ubl-conjugating enzyme (E2) at the E3:substrate
    complex

    Animal Models:

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    miRNA
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    miRTarBase miRNAs that target MAGEF1:
    hsa-mir-361-5p (MIRT044057), hsa-mir-615-3p (MIRT040473)

    Block miRNA regulation of human, mouse, rat MAGEF1 using miScript Target Protectors
    4 qRT-PCR Assays for microRNAs that regulate MAGEF1:
    hsa-miR-520d-5p hsa-miR-524-5p hsa-miR-3148 hsa-miR-548n
    SwitchGear 3'UTR luciferase reporter plasmidMAGEF1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat MAGEF1

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    Browse Sino Biological Human cDNA Clones
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAGEF1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MAGEF1
    Interactions:

        Search GeneGlobe Interaction Network for MAGEF1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

    Selected Interacting proteins for MAGEF1 (ENSP000003150644) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EID2ENSP000003750734STRING: ENSP00000375073
    EID2BENSP000003175644STRING: ENSP00000317564
    ENSG00000237071ENSP000004052294STRING: ENSP00000405229
    NSMCE1ENSP000003550774STRING: ENSP00000355077
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for MAGEF1 (MAGF1)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for MAGEF1 gene: 
    NM_022149.4  

    Unigene Cluster for MAGEF1:

    Melanoma antigen family F, 1
    Hs.306123  [show with all ESTs]
    Unigene Representative Sequence: NM_022149
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000317897(uc003fpa.3)
    miRNA
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    4 qRT-PCR Assays for microRNAs that regulate MAGEF1:
    hsa-miR-520d-5p hsa-miR-524-5p hsa-miR-3148 hsa-miR-548n
    SwitchGear 3'UTR luciferase reporter plasmidMAGEF1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat MAGEF1
    Clone
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    Primer
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    OriGene qPCR primer pairs and template standards for MAGEF1
    OriGene qSTAR qPCR primer pairs in human, mouse for MAGEF1
    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat MAGEF1
      QuantiTect SYBR Green Assays in human, mouse, rat MAGEF1
      QuantiFast Probe-based Assays in human, mouse, rat MAGEF1

    Additional mRNA sequence: 

    AF295378.1 AF320910.1 BC010056.2 

    5 DOTS entries:

    DT.452747  DT.100763175  DT.120905120  DT.100786142  DT.95257879 

    Selected AceView cDNA sequences (see all 316):

    CA426718 CR604017 BM781997 CR611656 AI336208 CR592482 AI698878 BE409453 
    AI336191 BM671615 AI597665 AI824237 BM849292 BM661739 CA413331 CR605442 
    BU688128 AI658601 CA503178 AI799914 CR596075 CR597086 AA644342 AI370700 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    MAGEF1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACCTTCATT
    MAGEF1 Expression
    About this image

    MAGEF1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    MAGEF1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.306123

    UniProtKB/Swiss-Prot: MAGF1_HUMAN, Q9HAY2
    Tissue specificity: Ubiquitous

        Custom PCR Arrays for MAGEF1
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    QuantiFast Probe-based Assays in human, mouse, rat MAGEF1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAGEF1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for MAGEF1 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Magef15 melanoma antigen family F, 1   --   16 21331901 
    chicken
    (Gallus gallus)
    Aves MAGE6
    Gallus gallus necdin-like 2 (NDNL2), mRNA.
    42(a)
    1 → many
    JH376257.1(2550-4829)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    43(a)
    1 → many
    1(205667349-205679701)
    zebrafish
    (Danio rerio)
    Actinopterygii ndnl26
    necdin-like 2
    34(a)
    1 → many
    23(13012414-13025121) ENSDARG00000058212


    ENSEMBL Gene Tree for MAGEF1 (if available)
    TreeFam Gene Tree for MAGEF1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for MAGEF1 gene
    MAGEC22  MAGEA9B2  MAGEB52  MAGEB162  MAGEB12  MAGEB42  MAGEC12  MAGED42  
    MAGEA82  MAGED22  MAGEA122  MAGEA92  MAGEB172  MAGEB102  MAGEA62  MAGED12  
    MAGEA22  MAGEA32  MAGEB22  NDN2  MAGEB32  MAGED4B2  MAGEA42  MAGEA12  
    MAGEA102  MAGEB182  MAGEA2B2  MAGEB62  MAGEL22  TRO2  MAGEA112  NDNL22  
    Selected SIMAP similar genes for MAGEF1 using alignment to 1 protein entry:     MAGF1_HUMAN(see all similar genes):
    MAGEE1    NDNL2    MAGEB16    MAGEB17    TRO    MAGEA10
    MAGEA11    MAGEB3    MAGEL2    MAGED1    MAGED4    MAGED4B
    MAGEA9    MAGEA9B    MAGEC2    MAGEE2    MAGED2    MAGEA2

    Find genes that share paralogs with MAGEF1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for MAGEF1 (see all 134)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs763124701,2
    C--184427663(+) TCACAG/TTACTG 1 -- ds50010--------
    rs772063031,2
    C,F--184427686(+) GATCTG/AAAATC 1 -- ds50012Minor allele frequency- A:0.10CSA WA 120
    rs1928602631,2
    --184427713(+) ATTTTG/TTTCTG 1 -- ds50010--------
    rs28895591,2
    C,H--184427786(+) CCTCCA/GTCTCC 1 -- ds50016Minor allele frequency- G:0.09WA NA CSA 11
    rs44446911,2
    C,A,H--184427787(+) CTCCGC/TCTCCT 1 -- ds50014Minor allele frequency- T:0.14NA CSA 7
    rs1502163961,2
    C--184427790(+) CGTCTC/TCTAGA 1 -- ds50010--------
    rs1387623191,2
    --184427850(+) GTGTGC/TCACCA 1 -- ds50010--------
    rs1841867251,2
    C--184427860(+) ACGCCC/TGGTTA 1 -- ds50010--------
    rs557703141,2
    C,F--184427962(+) CCAAAG/ATGCTG 1 -- ds50012Minor allele frequency- A:0.04WA 120
    rs1886429321,2
    C--184427963(+) CAAAGC/TGCTGG 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for MAGEF1 (184428155 - 184429836 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for MAGEF1:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv508973CNV Insertion20534489
    nsv829816CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing MAGEF1
    DNA2.0 Custom Variant and Variant Library Synthesis for MAGEF1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 609267    OMIM disorders: --


    Find genes that share disorders with MAGEF1           About GenesLikeMe

    Genetic Association Database (GAD): MAGEF1
    Human Genome Epidemiology (HuGE) Navigator: MAGEF1 (1 document)

    Export disorders for MAGEF1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MAGEF1 gene, integrated from 10 sources (see all 14):
    (articles sorted by number of sources associating them with MAGEF1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. MAGE-F1, a novel ubiquitously expressed member of the MAGE superfamily. (PubMed id 11313144)1, 2, 3 Stone B....Nelson B.H. (Gene 2001)
    2. Investigation of genetic susceptibility factors for human longevity - a targeted nonsynonymous SNP study. (PubMed id 20800603)1, 4 Flachsbart F....Nebel A. (Mutat. Res. 2010)
    3. MAGE-RING protein complexes comprise a family of E3 ubiquitin ligases. (PubMed id 20864041)1, 2 Doyle J.M.... Potts P.R. (Mol. Cell 2010)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. An overview of the MAGE gene family with the identification of all human members of the family. (PubMed id 11454705)1, 2 Chomez P.... Lucas S. (Cancer Res. 2001)
    6. The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925)1 Aichem A....Groettrup M. (J. Cell. Sci. 2012)
    7. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    8. Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels. (PubMed id 21810271)4 Antoni G....Tregouet D.A. (BMC Med. Genet. 2011)
    9. Interactions between the Nse3 and Nse4 components of the SMC5-6 complex identify evolutionarily conserved interactions between MAGE and EID Families. (PubMed id 21364888)1 Hudson J.J....Palecek J. (PLoS ONE 2011)
    10. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 64110 HGNC: 29639 AceView: MAGEF1 Ensembl:ENSG00000177383 euGenes: HUgn64110
    ECgene: MAGEF1 H-InvDB: MAGEF1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for MAGEF1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for MAGEF1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MAGEF1 gene:
    Search GeneIP for patents involving MAGEF1

    GeneCards and IP:
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