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Aliases for MAGED2 Gene

Aliases for MAGED2 Gene

  • MAGE Family Member D2 2 3 5
  • Hepatocellular Carcinoma-Associated Protein JCL-1 3 4
  • Breast Cancer-Associated Gene 1 Protein 3 4
  • Melanoma-Associated Antigen D2 2 3
  • Melanoma Antigen Family D2 2 3
  • MAGE-D2 Antigen 3 4
  • BCG-1 3 4
  • 11B6 3 4
  • BCG1 3 4
  • Hepatocellular Carcinoma-Associated Protein HCA10 2
  • Hepatocellular Carcinoma Associated Protein 2
  • Breast Cancer Associated Gene 1 2
  • Melanoma Antigen Family D, 2 3
  • MAGE-D2 3
  • BARTS5 3
  • HCA10 3

External Ids for MAGED2 Gene

Previous GeneCards Identifiers for MAGED2 Gene

  • GC0XP051686
  • GC0XP052772
  • GC0XP053439
  • GC0XP053800
  • GC0XP054717
  • GC0XP054850
  • GC0XP051883
  • GC0XP054834

Summaries for MAGED2 Gene

Entrez Gene Summary for MAGED2 Gene

  • This gene is a member of the MAGED gene family. The MAGED genes are clustered on chromosome Xp11. This gene is located in Xp11.2, a hot spot for X-linked mental retardation (XLMR). This gene may also be involved in several types of cancer, including breast cancer and melanoma. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2013]

GeneCards Summary for MAGED2 Gene

MAGED2 (MAGE Family Member D2) is a Protein Coding gene. Diseases associated with MAGED2 include Bartter Disease Type 5 and Antenatal Bartter Syndrome. Among its related pathways are Response to elevated platelet cytosolic Ca2+. An important paralog of this gene is TRO.

UniProtKB/Swiss-Prot for MAGED2 Gene

  • Regulates the expression, localization to the plasma membrane and function of the sodium chloride cotransporters SLC12A1 and SLC12A3, two key components of salt reabsorption in the distal renal tubule.

Gene Wiki entry for MAGED2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGED2 Gene

Genomics for MAGED2 Gene

Regulatory Elements for MAGED2 Gene

Enhancers for MAGED2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF054773 0.9 Ensembl ENCODE 13.6 -32.2 -32230 4.4 GLIS1 WT1 ZNF592 ZBTB20 TRO MAGED2 ITIH6 PGAM4P1
GH0XF054807 0.8 ENCODE 0.8 +1.1 1148 3.1 HDGF CREB3L1 ZNF133 DMAP1 GLIS2 ELK1 KLF7 KLF13 SP3 SP5 TRO MAGED2 GC0XP054814
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MAGED2 on UCSC Golden Path with GeneCards custom track

Promoters for MAGED2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000071757 1302 2999 HDGF CREB3L1 ZNF133 DMAP1 GLIS2 ELK1 KLF7 KLF13 SP3 SP5

Transcription factor binding sites by QIAGEN in the MAGED2 gene promoter:

Genomic Location for MAGED2 Gene

Chromosome:
X
Start:
54,807,599 bp from pter
End:
54,816,015 bp from pter
Size:
8,417 bases
Orientation:
Plus strand

Genomic View for MAGED2 Gene

Genes around MAGED2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MAGED2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MAGED2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGED2 Gene

Proteins for MAGED2 Gene

  • Protein details for MAGED2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UNF1-MAGD2_HUMAN
    Recommended name:
    Melanoma-associated antigen D2
    Protein Accession:
    Q9UNF1
    Secondary Accessions:
    • A6NMX0
    • O76058
    • Q5BJF3
    • Q8NAL6
    • Q9H218
    • Q9P0U9
    • Q9UM52

    Protein attributes for MAGED2 Gene

    Size:
    606 amino acids
    Molecular mass:
    64954 Da
    Quaternary structure:
    • Interacts with GNAS. May interact with DNAJB1.

    Alternative splice isoforms for MAGED2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MAGED2 Gene

Post-translational modifications for MAGED2 Gene

  • Ubiquitination at Lys 207, Lys 288, Lys 330, Lys 397, Lys 469, Lys 484, Lys 494, and Lys 528
  • Glycosylation at Ser 52
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for MAGED2 Gene

Domains & Families for MAGED2 Gene

Gene Families for MAGED2 Gene

Protein Domains for MAGED2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for MAGED2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UNF1

UniProtKB/Swiss-Prot:

MAGD2_HUMAN :
  • Contains 1 MAGE domain.
Domain:
  • Contains 1 MAGE domain.
genes like me logo Genes that share domains with MAGED2: view

Function for MAGED2 Gene

Molecular function for MAGED2 Gene

UniProtKB/Swiss-Prot Function:
Regulates the expression, localization to the plasma membrane and function of the sodium chloride cotransporters SLC12A1 and SLC12A3, two key components of salt reabsorption in the distal renal tubule.

Gene Ontology (GO) - Molecular Function for MAGED2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25852190
genes like me logo Genes that share ontologies with MAGED2: view
genes like me logo Genes that share phenotypes with MAGED2: view

Animal Model Products

miRNA for MAGED2 Gene

miRTarBase miRNAs that target MAGED2

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MAGED2 Gene

Localization for MAGED2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MAGED2 Gene COMPARTMENTS Subcellular localization image for MAGED2 gene
Compartment Confidence
cytosol 4
nucleus 4

Gene Ontology (GO) - Cellular Components for MAGED2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with MAGED2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for MAGED2 Gene

Pathways & Interactions for MAGED2 Gene

genes like me logo Genes that share pathways with MAGED2: view

Gene Ontology (GO) - Biological Process for MAGED2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007565 female pregnancy IMP 27120771
GO:0070294 renal sodium ion absorption IMP 27120771
genes like me logo Genes that share ontologies with MAGED2: view

No data available for SIGNOR curated interactions for MAGED2 Gene

Transcripts for MAGED2 Gene

Unigene Clusters for MAGED2 Gene

Melanoma antigen family D, 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MAGED2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d · 7e ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^
SP1: - - - - - - -
SP2: - - - - -
SP3: - -
SP4: -
SP5: - - - - - - - - - -
SP6: -
SP7: - - - - - - -
SP8: - - - -
SP9: - - - - - - - - - - - -
SP10: - - - -
SP11:
SP12: - - -
SP13:
SP14:
SP15:

ExUns: 13 ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17 ^ 18a · 18b
SP1: - -
SP2: - -
SP3: - -
SP4: - -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:

Relevant External Links for MAGED2 Gene

GeneLoc Exon Structure for
MAGED2
ECgene alternative splicing isoforms for
MAGED2

Expression for MAGED2 Gene

mRNA expression in normal human tissues for MAGED2 Gene

Protein differential expression in normal tissues from HIPED for MAGED2 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (14.5), Nasal epithelium (10.4), and Bone (9.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MAGED2 Gene



Protein tissue co-expression partners for MAGED2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MAGED2 Gene:

MAGED2

SOURCE GeneReport for Unigene cluster for MAGED2 Gene:

Hs.522665

mRNA Expression by UniProt/SwissProt for MAGED2 Gene:

Q9UNF1-MAGD2_HUMAN
Tissue specificity: Widely expressed. In the developing and adult kidney, expressed in the thick ascending limb of the loop of Henle and the distal convoluted tubules outside the loop.
genes like me logo Genes that share expression patterns with MAGED2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for MAGED2 Gene

Orthologs for MAGED2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MAGED2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MAGED2 34 35
  • 99.61 (n)
cow
(Bos Taurus)
Mammalia MAGED2 34 35
  • 90.93 (n)
dog
(Canis familiaris)
Mammalia MAGED2 34 35
  • 90.84 (n)
mouse
(Mus musculus)
Mammalia Maged2 34 16 35
  • 88.23 (n)
rat
(Rattus norvegicus)
Mammalia Maged2 34
  • 88.23 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 45 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 42 (a)
OneToMany
chicken
(Gallus gallus)
Aves MAGE 35
  • 43 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 41 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ndnl2 35
  • 40 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 39 (a)
OneToMany
Species where no ortholog for MAGED2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MAGED2 Gene

ENSEMBL:
Gene Tree for MAGED2 (if available)
TreeFam:
Gene Tree for MAGED2 (if available)

Paralogs for MAGED2 Gene

Variants for MAGED2 Gene

Sequence variations from dbSNP and Humsavar for MAGED2 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
VAR_036584 A breast cancer sample
VAR_076836 Bartter syndrome 5, antenatal, transient (BARTS5) [MIM:300971]
rs875989852 Pathogenic 54,810,073(+) ATACA(A/T)AGGTC reference, stop-gained
rs878854404 Pathogenic 54,812,204(+) TTGTA(C/G)ATTCT reference, stop-gained
rs878854405 Pathogenic 54,812,155(+) TCCAC(A/G)GGTAT splice-acceptor-variant

Structural Variations from Database of Genomic Variants (DGV) for MAGED2 Gene

Variant ID Type Subtype PubMed ID
esv2740175 CNV deletion 23290073
nsv1151356 CNV duplication 26484159
nsv435891 CNV deletion 17901297

Variation tolerance for MAGED2 Gene

Residual Variation Intolerance Score: 56.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.53; 44.20% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MAGED2 Gene

Human Gene Mutation Database (HGMD)
MAGED2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MAGED2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MAGED2 Gene

Disorders for MAGED2 Gene

MalaCards: The human disease database

(4) MalaCards diseases for MAGED2 Gene - From: ClinVar, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
bartter disease type 5
  • barts5
antenatal bartter syndrome
  • hyperprostaglandin e syndrome
polyhydramnios
breast cancer
  • breast cancer, invasive ductal
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

MAGD2_HUMAN
  • Bartter syndrome 5, antenatal, transient (BARTS5) [MIM:300971]: An X-linked recessive form of Bartter syndrome, a disorder characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. BARTS5 is an antenatal form beginning in utero with marked fetal polyuria that leads to polyhydramnios and premature delivery. It is characterized by severe but transient symptoms that can resolve with age. {ECO:0000269 PubMed:27120771}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for MAGED2

Genetic Association Database (GAD)
MAGED2
Human Genome Epidemiology (HuGE) Navigator
MAGED2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MAGED2
genes like me logo Genes that share disorders with MAGED2: view

No data available for Genatlas for MAGED2 Gene

Publications for MAGED2 Gene

  1. Polyhydramnios, Transient Antenatal Bartter's Syndrome, and MAGED2 Mutations. (PMID: 27120771) Laghmani K. … KAPmhoff M. (N. Engl. J. Med. 2016) 3 4 64
  2. Use of expression data and the CGEMS genome-wide breast cancer association study to identify genes that may modify risk in BRCA1/2 mutation carriers. (PMID: 18095154) Walker L.C. … Spurdle A.B. (Breast Cancer Res. Treat. 2008) 3 46 64
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4 64
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for MAGED2 Gene

Sources for MAGED2 Gene

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