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MAGEC1 Gene

protein-coding GIFtS: 53

GC0XP140819

melanoma antigen family C, 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
CT7 ^¹, ²
CT7.1 ^¹, ², ³
MAGE-C1 ^¹, ²
MGC39366 ^¹, ²
OTTHUMP00000024183 ^²

Descriptions
Cancer/testis antigen 7.1 ^³
MAGE-C1 antigen ^³
cancer/testis antigen family 7, member 1 ^²
melanoma antigen family C, 1 ^²

External Ids
HGNC: 6812¹
Entrez Gene: 9947²
UniProtKB: O60732³
Ensembl: ENSG00000155495⁷

Search outside databases for aliases for MAGEC1 gene

Previous GC identifers: GC0XP135521 GC0XP137849 GC0XP138924 GC0XP139685 GC0XP140717

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for MAGEC1:

This gene is a member of the melanoma antigen gene (MAGE) family. The proteins of this family are

tumor-specific antigens that can be recognized by autologous cytolytic T lymphocytes. This protein

contains a large number of unique short repetitive sequences in front of the MAGE-homologous

sequence, and therefore is about 800 aa longer than the other MAGE proteins. [provided by RefSeq]

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the MAGEC1 gene

Entrez Gene cytogenetic band: Xq26 Ensembl cytogenetic band: Xq27.2 HGNC cytogenetic band: Xq26

MAGEC1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X GeneLoc Exon Structure

GeneLoc location for GC0XP140819: (about GC identifiers)

Start:	140,819,346 bp from pter
End:	140,824,849 bp from pter
Size:	5,504 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000023.9 NT_011786.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: MAGC1_HUMAN, O60732 (See protein sequence)

Recommended Name: Melanoma-associated antigen C1

Size: 1142 amino acids; 123643 Da

Secondary accessions: O75451 Q8TCV4

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_005453.2

ENSEMBL proteins:

ENSP00000285879 ENSP00000359542 ENSP00000359541

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (MAGEC1)
	Human Recombinant Proteins from Abnova (MAGEC1)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	18029348
GO:0005737	cytoplasm	IDA	18029348
GO:0005794	Golgi apparatus	IDA	18029348

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Antibodies for MAGEC1:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for MAGEC1
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (MAGEC1), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (MAGEC1)
	Search Novus for antibodies for MAGEC1

Assays for MAGEC1:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry O60732

ProtoNet protein and cluster: O60732

1 Blocks protein family: IPB002190 MAGE protein

UniProtKB/Swiss-Prot: MAGC1_HUMAN, O60732

Similarity: Contains 1 MAGE domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (MAGEC1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005462

Applied Biosystems Silencer® siRNAs for MAGEC1

Sigma-Aldrich siRNA for MAGEC1

Sigma-Aldrich shRNA for MAGEC1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_005462
Myc/DDK tagged cDNA clone in CMV expression vector: NM_005462
untagged cDNA clone in CMV expression vector: NM_005462

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_005462

Genatlas biochemistry entry for MAGEC1:

melanoma antigen,family C,member 1,expressed in a significant proportion of tumors of various

histological types and in normal testis

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	IPI	17137291

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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5/6 Interacting proteins for MAGEC1 (O60732¹ ENSP00000285879³) via UniProtKB, MINT, and/or STRING (see all 6 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CTAG1A	P78358¹	EBI-1188463, EBI-1188472
BAGE5	ENSP00000335528³	STRING (score=.851)
SSX1	ENSP00000366118³	STRING (score=.748)
CTAG2	ENSP00000247306³	STRING (score=.72)
LUZP4	ENSP00000360988³	STRING (score=.718)

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for MAGEC1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (MAGEC1)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005462

Sigma-Aldrich siRNA for MAGEC1

Sigma-Aldrich shRNA for MAGEC1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_005462

REFSEQ mRNAs for MAGEC1 gene:

NM_005462.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_005462

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005462
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005462
                                 untagged cDNA clone in CMV expression vector: NM_005462

Additional cDNA sequence:

AF056334.1 AY952890.2 BC127771.1 BC153867.1

3 DOTS entries:

DT.100742553 DT.40129166 DT.101984224

24/32 AceView cDNA sequences (see all 32 ):

AI652057 BM472698 BE728581 BE729100 BG476223 BM792325 CA428538 BU167318

BQ772869 BX102175 AL121291 BV198183 BE729883 AL121366 BM787462 BM904844

BU619882 NM_005462 AI126114 AW515767 AL135051 AF056334 CA428722 BE727610

highest scoring ESTs for MAGEC1:

AF056334 AI126114 AI652057 AI688637 AL121291 AL121366 AL135051 AW016314 AW515767 BE728581

Unigene Cluster for MAGEC1:

Melanoma antigen family C, 1

Hs.132194 [show with all ESTs]

Unigene Representative Sequence: NM_005462

GeneLoc Exon Structure

3 Ensembl transcripts including schematic representations:

ENST00000285879 ENST00000370511 ENST00000370510

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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MAGEC1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for MAGEC1

¹ / ² / ³

3 probe-sets matching MAGEC1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
34932_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	AF056334	1.00	1.00	1.00	1
206609_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_005462	0.60	1.00	0.82	1
206609_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: CTAAAGAATA

SOURCE GeneReport for Unigene cluster: Hs.132194
Expression variation in blood from EXPOLDB for MAGEC1
UniProtKB/Swiss-Prot: MAGC1_HUMAN, O60732
Tissue specificity: Expressed in testis and in tumors of a wide variety of histologic types

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for MAGEC1 gene from 1 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	MAGEC1¹	--	melanoma antigen family C, 1	95.26(n) 92.48(a)	465892 XM_521292.2 XP_521292.2

About this table Species with no ortholog for MAGEC1

ENSEMBL Gene Tree for MAGEC1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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Paralogs for MAGEC1 gene

MAGEC2² MAGEC3²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/73 NCBI SNPs in MAGEC1 are shown (see all 73 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 25)

AB	SNP ID	Valid	Chr X pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
--	rs176033^1,2	A,C,F,H,O	140817363(+)	`TTAGAA/GTTTTG`	1	--	ng5¹		5		EU EA NA	311
	rs1003682^1,2	A,C,F,H	140818517(+)	`GTCCCC/TGGAGA`	1	--	ng5¹		8		EU EA WA NA	630
	rs176034^1,2	C,F,H	140817892(+)	`tttctC/Tggaag`	1	--	ng5¹		12		EU EA WA	838
	rs176049^1,2	A,F,H	140825219(+)	`ATGAAT/GCAGAG`	1	--	ng3¹		8		EA NA EU WA	652
	rs176036^1,2	A,F	140820930(+)	`GAGTTG/ATCCTG`	1	Y/C	mis¹ ese³		1		MN	184
--	rs176037^1,2	A,F	140821308(+)	`GAGTAC/TTCAAA`	1	T/I	mis¹ ese³		1		MN	184
--	rs12558365^1,2	C	140821578(+)	`CTCCTC/TCTCCT`	1	S/F	mis¹ trp³		0	--	--	--	--
--	rs176047^1,2	F	140821837(+)	`ACTCAG/CAGTAC`	1	Q/H	mis¹ ese³		1		MN	184
--	rs1055491^1,2	F	140821683(+)	`CTCCTC/TCTCCT`	1	F/S	mis¹ ese³ trp³		1		MN	184
	rs12857070^1,2	H	140820223(+)	`TCCTAA/GAAGCA`	1	--	ut5¹ ese³		4		EU EA WA	402

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HapMap Linkage Disequilibrium images for MAGEC1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 300223

3 Novoseek disease relationships for MAGEC1 gene

Disease	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
melanoma	54.82	2	15761016 (1), 17137291 (1)
cancer	26.01	4	9485030 (1), 17607369 (1)
tumors	19.47	5	15515159 (2), 9485030 (1)

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(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/13 PubMed articles for MAGEC1 gene (see all 13 ):

Identification of a new MAGE gene with tumor-specific expression by representational difference analysis. (PubMed id 9485030)^{1, 2, 3, 4} Lucas S....Boon T. (1998)
Identification of multiple cancer/testis antigens by allogeneic antibody screening of a melanoma cell line library. (PubMed id 9618514)^{2, 3, 4} Chen Y.T....Old L.J. (1998)
The DNA sequence of the human X chromosome. (PubMed id 15772651)^{3, 4} Ross M.T.... Bentley D.R. (2005)
Physical interaction of two cancer-testis antigens, MAGE-C1 (CT7) and NY-ESO-1 (CT6). (PubMed id 17137291)^{1, 3} Cho H.J....Simpson A.J. (2006)
Expression of cancer-testis antigen CT7 (MAGE-C1) in breast cancer: an immunohistochemical study with emphasis on prognostic utility. (PubMed id 17607369)^{1, 3} Kruger S....Friedrich M. (2007)
Prognostic impact of cancer/testis antigen expression in advanced stage multiple myeloma patients. (PubMed id 18237105)³ Andrade V.C....Colleoni G.W. (2008)
Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)³ Barbe L....Andersson-Svahn H. (2008)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
CT7 (MAGE-C1) antigen expression in normal and neoplastic tissues. (PubMed id 12115486)³ Jungbluth A.A....Old L.J. (2002)
MAGE-C1 (CT7) gene expression in multiple myeloma: relationship to sperm protein 17. (PubMed id 11872084)³ Lim S.H....Wang Z. (2001)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 9947	HGNC: 6812	AceView: MAGEC1	Ensembl:ENSG00000155495	euGenes: HUgn9947
ECgene: MAGEC1	H-InvDB: MAGEC1

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
ATLAS Chromosomes in Cancer entry for MAGEC1	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for MAGEC1
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for MAGEC1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for MAGEC1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for MAGEC1		Antibodies for MAGEC1
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for MAGEC1		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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MAGEC1 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for MAGEC1

Summaries
for MAGEC1

Genomic Location
for MAGEC1

Proteins
for MAGEC1

Protein Domains/
Families
for MAGEC1

Gene Function
for MAGEC1

Pathways & Interactions
for MAGEC1

Drugs & Compounds
for MAGEC1

Transcripts
for MAGEC1

Expression
for MAGEC1

Orthologs
for MAGEC1

Paralogs
for MAGEC1

SNPs/Variants
for MAGEC1

Disorders & Mutations
for MAGEC1

Medical News
for MAGEC1

Publications
for MAGEC1

Search for MAGEC1

Genome Databases showing MAGEC1

Other Databases showing MAGEC1

Specialized Databases showing MAGEC1

Licensable Technologies
for MAGEC1

Services
for MAGEC1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

MAGEC1 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor MAGEC1

Summariesfor MAGEC1

Genomic Locationfor MAGEC1

Proteinsfor MAGEC1

Protein Domains/Familiesfor MAGEC1

Gene Functionfor MAGEC1

Pathways & Interactionsfor MAGEC1

Drugs & Compoundsfor MAGEC1

Transcriptsfor MAGEC1

Expression for MAGEC1

Orthologsfor MAGEC1

Paralogsfor MAGEC1

SNPs/Variantsfor MAGEC1

Disorders & Mutationsfor MAGEC1

Medical Newsfor MAGEC1

Publicationsfor MAGEC1

Search for MAGEC1

Genome Databases showing MAGEC1

Other Databases showing MAGEC1

Specialized Databases showing MAGEC1

Licensable Technologiesfor MAGEC1

Servicesfor MAGEC1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for MAGEC1

Summaries
for MAGEC1

Genomic Location
for MAGEC1

Proteins
for MAGEC1

Protein Domains/
Families
for MAGEC1

Gene Function
for MAGEC1

Pathways & Interactions
for MAGEC1

Drugs & Compounds
for MAGEC1

Transcripts
for MAGEC1

Expression
for MAGEC1

Orthologs
for MAGEC1

Paralogs
for MAGEC1

SNPs/Variants
for MAGEC1

Disorders & Mutations
for MAGEC1

Medical News
for MAGEC1

Publications
for MAGEC1

Licensable Technologies
for MAGEC1

Services
for MAGEC1