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Aliases for MAGEB4 Gene

Aliases for MAGEB4 Gene

  • Melanoma Antigen Family B4 2 3
  • Melanoma-Associated Antigen B4 2 3
  • MAGE-B4 Antigen 3 4
  • Cancer/Testis Antigen Family 3, Member 6 3
  • Cancer/Testis Antigen Family 3 2
  • Melanoma Antigen Family B, 4 3
  • Member 6 2
  • CT3.6 3

External Ids for MAGEB4 Gene

Summaries for MAGEB4 Gene

Entrez Gene Summary for MAGEB4 Gene

  • This gene is a member of the MAGEB gene family. The members of this family have their entire coding sequences located in the last exon, and the encoded proteins show 50 to 68% sequence identity to each other. The promoters and first exons of the MAGEB genes show considerable variability, suggesting that the existence of this gene family enables the same function to be expressed under different transcriptional controls. The MAGEB genes are clustered on chromosome Xp22-p21. This gene sequence ends in the first intron of MAGEB1, another family member. This gene is expressed in testis. [provided by RefSeq, Jul 2008]

GeneCards Summary for MAGEB4 Gene

MAGEB4 (Melanoma Antigen Family B4) is a Protein Coding gene. Diseases associated with MAGEB4 include melanoma. An important paralog of this gene is MAGED1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGEB4 Gene

Genomics for MAGEB4 Gene

Genomic Location for MAGEB4 Gene

Start:
30,241,940 bp from pter
End:
30,244,193 bp from pter
Size:
2,254 bases
Orientation:
Plus strand

Genomic View for MAGEB4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MAGEB4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGEB4 Gene

Regulatory Elements for MAGEB4 Gene

Proteins for MAGEB4 Gene

  • Protein details for MAGEB4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15481-MAGB4_HUMAN
    Recommended name:
    Melanoma-associated antigen B4
    Protein Accession:
    O15481
    Secondary Accessions:
    • B2R9G0
    • Q6FHH4
    • Q8IZ00

    Protein attributes for MAGEB4 Gene

    Size:
    346 amino acids
    Molecular mass:
    38923 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MAGEB4 Gene

Proteomics data for MAGEB4 Gene at MOPED

Post-translational modifications for MAGEB4 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys284

Other Protein References for MAGEB4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MAGEB4 Gene

Domains for MAGEB4 Gene

Protein Domains for MAGEB4 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for MAGEB4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O15481

UniProtKB/Swiss-Prot:

MAGB4_HUMAN
Domain:
  • Contains 1 MAGE domain.:
    • O15481
genes like me logo Genes that share domains with MAGEB4: view

No data available for Gene Families for MAGEB4 Gene

Function for MAGEB4 Gene

Molecular function for MAGEB4 Gene

GENATLAS Biochemistry: melanoma antigen,family B,member 4,expressed in testis

Gene Ontology (GO) - Molecular Function for MAGEB4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with MAGEB4: view

Phenotypes for MAGEB4 Gene

GenomeRNAi human phenotypes for MAGEB4:
genes like me logo Genes that share phenotypes with MAGEB4: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MAGEB4 Gene

Localization for MAGEB4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MAGEB4 Gene COMPARTMENTS Subcellular localization image for MAGEB4 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for MAGEB4 Gene

Pathways for MAGEB4 Gene

SuperPathways for MAGEB4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAGEB4 Gene

None

No data available for Pathways by source for MAGEB4 Gene

Transcripts for MAGEB4 Gene

mRNA/cDNA for MAGEB4 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(24) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MAGEB4 Gene

Melanoma antigen family B, 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGEB4 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c
SP1: - -
SP2: -
SP3: - - -
SP4: -
SP5:

Relevant External Links for MAGEB4 Gene

GeneLoc Exon Structure for
MAGEB4
ECgene alternative splicing isoforms for
MAGEB4

Expression for MAGEB4 Gene

mRNA expression in normal human tissues for MAGEB4 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MAGEB4 Gene

SOURCE GeneReport for Unigene cluster for MAGEB4 Gene Hs.113291

mRNA Expression by UniProt/SwissProt for MAGEB4 Gene

O15481-MAGB4_HUMAN
Tissue specificity: Expressed in testis
genes like me logo Genes that share expressions with MAGEB4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for MAGEB4 Gene

Orthologs for MAGEB4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MAGEB4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MAGEB4 35
  • 99.13 (n)
  • 98.55 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 52 (a)
ManyToMany
-- 36
  • 48 (a)
ManyToMany
-- 36
  • 54 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
-- 36
  • 49 (a)
ManyToMany
-- 36
  • 49 (a)
ManyToMany
-- 36
  • 50 (a)
ManyToMany
-- 36
  • 48 (a)
ManyToMany
-- 36
  • 52 (a)
ManyToMany
-- 36
  • 50 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
LOC101906038 35
  • 73.76 (n)
  • 58.91 (a)
MAGEB4 36
  • 49 (a)
ManyToMany
MGC133764 36
  • 48 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Mageb2 16
Mageb4 36
  • 33 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Mageb1 35
  • 66.36 (n)
  • 52.48 (a)
Species with no ortholog for MAGEB4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MAGEB4 Gene

ENSEMBL:
Gene Tree for MAGEB4 (if available)
TreeFam:
Gene Tree for MAGEB4 (if available)

Paralogs for MAGEB4 Gene

Pseudogenes.org Pseudogenes for MAGEB4 Gene

genes like me logo Genes that share paralogs with MAGEB4: view

Variants for MAGEB4 Gene

Sequence variations from dbSNP and Humsavar for MAGEB4 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1573631 -- 30,241,229(+) atcat(G/T)tcatg upstream-variant-2KB
rs2158945 -- 30,241,075(+) gtcca(C/T)cagca upstream-variant-2KB
rs2529558 -- 30,240,087(+) CTATC(A/T)GATCT upstream-variant-2KB
rs2529559 -- 30,240,258(+) TTAAA(G/T)TGCCA upstream-variant-2KB
rs2529560 -- 30,240,647(+) aacct(G/T)tggaa upstream-variant-2KB

Relevant External Links for MAGEB4 Gene

HapMap Linkage Disequilibrium report
MAGEB4
Locus Specific Mutation Databases (LSDB)
MAGEB4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MAGEB4 Gene

Disorders for MAGEB4 Gene

(1) MalaCards Diseases for MAGEB4 Gene

Search for MAGEB4 Gene in MalaCards »
genes like me logo Genes that share disorders with MAGEB4: view

No data available for UniProtKB/Swiss-Prot for MAGEB4 Gene

Publications for MAGEB4 Gene

  1. Two members of the human MAGEB gene family located in Xp21.3 are expressed in tumors of various histological origins. (PMID: 9441743) Lurquin C. … Boon T. (Genomics 1997) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for MAGEB4 Gene

Sources for MAGEB4 Gene

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