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MAGEB3 Gene

protein-coding   GIFtS: 48
GCID: GC0XP030248

Melanoma Antigen Family B, 3

  See MAGEB3-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Melanoma Antigen Family B, 31 2     CT3.52
MAGE-B3 Antigen2 3     Cancer/Testis Antigen Family 3, Member 52
Cancer/Testis Antigen Family 31     Melanoma-Associated Antigen B32
Member 51     

External Ids:    HGNC: 68101   Entrez Gene: 41142   Ensembl: ENSG000001987987   OMIM: 3001525   UniProtKB: O154803   

Export aliases for MAGEB3 gene to outside databases

Previous GC identifers: GC0XP028753 GC0XP028932 GC0XP029450 GC0XP029615 GC0XP030008 GC0XP030158 GC0XP027985


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MAGEB3 Gene:
This gene is a MAGE-B subfamily member of the MAGE gene family. MAGE family member proteins direct the expression
of tumor antigens recognized on a human melanoma by autologous cytolytic T lymphocytes. There are two known
clusters of MAGE genes on chromosome X. The members of the MAGE-A subfamily are located in the Xq28 region, while
the members of the MAGE-B subfamily are clustered in the Xp21 region. (provided by RefSeq, Jul 2008)

GeneCards Summary for MAGEB3 Gene:
MAGEB3 (melanoma antigen family B, 3) is a protein-coding gene. Diseases associated with MAGEB3 include melanoma. An important paralog of this gene is MAGEC2.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000023.10  NT_167197.2  NC_018934.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the MAGEB3 gene promoter:
         LHX3b/Lhx3b   Brachyury   RelA   Ik-3   NF-kappaB   c-Rel   ARP-1   LHX3a/Lhx3a   NF-kappaB1   Hlf   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMAGEB3 promoter sequence
   Search Chromatin IP Primers for MAGEB3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MAGEB3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp21.3   Ensembl cytogenetic band:  Xp21.2   HGNC cytogenetic band: Xp21.3

MAGEB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MAGEB3 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP030248:  view genomic region     (about GC identifiers)

Start:
30,248,553 bp from pter      End:
30,255,610 bp from pter
Size:
7,058 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: MAGB3_HUMAN, O15480 (See protein sequence)
Recommended Name: Melanoma-associated antigen B3  
Size: 346 amino acids; 39211 Da
Secondary accessions: A0AVE4 B3KQ52 O75861

Explore the universe of human proteins at neXtProt for MAGEB3: NX_O15480

Explore proteomics data for MAGEB3 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See MAGEB3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_002356.2  
    ENSEMBL proteins: 
     ENSP00000355198  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR021072 Melanoma_ass_antigen_N
     IPR002190 MAGE

    Graphical View of Domain Structure for InterPro Entry O15480

    ProtoNet protein and cluster: O15480

    1 Blocks protein domain: IPB002190 MAGE protein

    UniProtKB/Swiss-Prot: MAGB3_HUMAN, O15480
    Similarity: Contains 1 MAGE domain


    Find genes that share domains with MAGEB3           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for MAGEB3:
    melanoma antigen,family B,member 3,expressed in normal testis and in testicular tumor

    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus2
    cytosol1
    mitochondrion1
    peroxisome1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MAGEB3
    Interactions:

        Search GeneGlobe Interaction Network for MAGEB3

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for MAGEB3 (MAGB3)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for MAGEB3 gene: 
    NM_002365.4  

    Unigene Cluster for MAGEB3:

    Melanoma antigen family B, 3
    Hs.113290  [show with all ESTs]
    Unigene Representative Sequence: NM_002365
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000361644(uc004dca.2)
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    Additional mRNA sequence: 

    AK057441.1 BC069784.1 BC074756.2 BC126320.1 BC126322.1 

    1 DOTS entry:

    DT.106558 

    Selected AceView cDNA sequences (see all 61):

    NM_002365 BI520298 CR593708 CR618278 CR618499 CR611588 BX107939 CR590008 
    CR621494 NM_002364 AL562631 CA428956 AW589912 AI479347 BC026071 BM471242 
    BU621468 AK057441 BU629619 BC074756 BX329175 BU175305 BC069784 AA815379 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    MAGEB3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGCAGAAAGT
    MAGEB3 Expression
    About this image

    MAGEB3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    MAGEB3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.113290

    UniProtKB/Swiss-Prot: MAGB3_HUMAN, O15480
    Tissue specificity: Expressed in testis

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for MAGEB3 gene from Selected species (see all 3)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    rat
    (Rattus norvegicus)
    Mammalia Mageb31 melanoma antigen family B, 3 73.54(n)
    62.15(a)
      302746  NM_001106965.1  NP_001100435.1 


    ENSEMBL Gene Tree for MAGEB3 (if available)
    TreeFam Gene Tree for MAGEB3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for MAGEB3 gene
    MAGEC22  MAGEA9B2  MAGEB52  MAGEB162  MAGEB12  MAGEB42  MAGEC12  MAGED42  
    MAGEA82  MAGED22  MAGEA122  MAGEA92  MAGEB172  MAGEB102  MAGEA62  MAGED12  
    MAGEA22  MAGEA32  MAGEB22  NDN2  MAGED4B2  MAGEA42  MAGEA12  MAGEA102  
    MAGEB182  MAGEA2B2  MAGEB62  MAGEL22  TRO2  NDNL22  MAGEA112  MAGEF12  
    Selected SIMAP similar genes for MAGEB3 using alignment to 1 protein entry:     MAGB3_HUMAN(see all similar genes):
    MAGE-B1    MAGEB1    MAGEB17    MAGEB2    MAGEB4    MAGEC4
    MAGEB10    MAGEB5    MAGEH1    MAGEB18    MAGEC3    MAGEB16
    MAGEB6    MAGEC2    MAGEC1    MAGEA11    MAGEA8    MAGEF1

    Find genes that share paralogs with MAGEB3           About GenesLikeMe


    3 Pseudogenes.org Pseudogenes for MAGEB3
    PGOHUM00000241671 PGOHUM00000241673 PGOHUM00000241675


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for MAGEB3 (see all 165)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs348858681,2
    C--27988303(+) TTTTT-/TAATTT 1 -- int10--------
    rs1893946111,2
    --30161300(+) AATTTC/TTTGCC 1 -- us2k10--------
    rs1506639891,2
    --30161317(+) ATTTTA/GGAGTC 1 -- us2k10--------
    rs1117825341,2
    C--30161339(+) GTCAT-/AAAAAA 1 -- us2k11Minor allele frequency- A:0.00CSA 2
    rs1400197831,2
    --30161416(+) GAGGTC/TTGAGA 1 -- us2k10--------
    rs25295471,2
    C,H--30161812(+) GTTGTG/TGGAAA 1 -- us2k16Minor allele frequency- T:0.00NS EA NA 420
    rs1498458051,2
    --30161857(+) AAGTGC/TTCTAT 1 -- us2k10--------
    rs1925984271,2
    --30161925(+) TCTCTA/GGTGAG 1 -- us2k10--------
    rs1837639821,2
    --30162027(+) AAGAGA/CCCGCT 1 -- us2k10--------
    rs1883291331,2
    --30162029(+) GAGCCC/TGCTCT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for MAGEB3 (30248553 - 30255610 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for MAGEB3:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2668620CNV Deletion23128226
    esv2740048CNV Deletion23290073

    Locus Specific Mutation Databases (LSDB): MAGEB3

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 300152    OMIM disorders: --

    1 disease for MAGEB3:    
    About MalaCards
    melanoma


    Find genes that share disorders with MAGEB3           About GenesLikeMe


    Export disorders for MAGEB3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for MAGEB3 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with MAGEB3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Two members of the human MAGEB gene family located in Xp21.3 are expressed in tumors of various histological origins. (PubMed id 9441743)1, 2, 3 Lurquin C.... Boon T. (Genomics 1997)
    2. The DNA sequence of the human X chromosome. (PubMed id 15772651)1, 2 Ross M.T.... Bentley D.R. (Nature 2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    7. MAGE-B5, MAGE-B6, MAGE-C2, and MAGE-C3: four new members of the MAGE family with tumor-specific expression. (PubMed id 10861452)1 Lucas S.... Boon T. (Int. J. Cancer 2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 4114 HGNC: 6810 AceView: MAGEB2andMAGEB3 Ensembl:ENSG00000198798 euGenes: HUgn4114
    ECgene: MAGEB3 H-InvDB: MAGEB3

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for MAGEB3 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for MAGEB3 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for MAGEB3 gene:
    Search GeneIP for patents involving MAGEB3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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