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MAGEA5 Gene

protein-coding   GIFtS: 39
GCID: GC0XM151282

Melanoma Antigen Family A, 5


(Previous symbol: MAGE5)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Melanoma Antigen Family A, 51 2     MAGE-5 Antigen2 3
MAGE51 2 3 5     Cancer/Testis Antigen Family 11
MAGE-5a Antigen1 2     Member 51
MAGE-5b Antigen1 2     MAGEA42
Cancer/Testis Antigen 1.52 3     Cancer/Testis Antigen Family 1, Member 52
CT1.52 3     Melanoma-Associated Antigen 52

External Ids:    HGNC: 68031   Entrez Gene: 41042   Ensembl: ENSG000002425207   OMIM: 3003405   UniProtKB: P433593   

Export aliases for MAGEA5 gene to outside databases

Previous GC identifers: GC0XM145618 GC0XM147941 GC0XM149030 GC0XM149900 GC0XM150953 GC0XM151033 GC0XM140136


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MAGEA5 Gene:
This gene is a member of the MAGEA gene family. The members of this family encode proteins with 50 to 80% sequence
identity to each other. The promoters and first exons of the MAGEA genes show considerable variability,
suggesting that the existence of this gene family enables the same function to be expressed under different
transcriptional controls. The MAGEA genes are clustered at chromosomal location Xq28. They have been implicated
in some hereditary disorders, such as dyskeratosis congenita. This MAGEA gene encodes a protein that is
C-terminally truncated compared to other family members, and this gene can be alternatively interpreted to be a
pseudogene. The protein is represented in this Gene record in accordance with the assumed protein-coding status
defined in the literature. Read-through transcription exists between this gene and the upstream melanoma antigen
family A, 10 (MAGEA10) gene. (provided by RefSeq, Oct 2011)

GeneCards Summary for MAGEA5 Gene:
MAGEA5 (melanoma antigen family A, 5) is a protein-coding gene. Diseases associated with MAGEA5 include oral squamous cell carcinoma, and dyskeratosis congenita. An important paralog of this gene is MAGEA10-MAGEA5.

UniProtKB/Swiss-Prot: MAGA5_HUMAN, P43359
Function: Not known, though may play a role tumor transformation or progression. In vitro promotes cell viability
in melanoma cell lines




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the MAGEA5 gene promoter:
         AhR   GR   MEF-2A   Nkx6-1   FOXJ2 (long isoform)   FOXJ2   aMEF-2   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMAGEA5 promoter sequence
   Search Chromatin IP Primers for MAGEA5

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MAGEA5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xq28   Ensembl cytogenetic band:  Xq28   HGNC cytogenetic band: Xq28

MAGEA5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MAGEA5 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM151282:  view genomic region     (about GC identifiers)

Start:
151,282,526 bp from pter      End:
151,286,444 bp from pter
Size:
3,919 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: MAGA5_HUMAN, P43359 (See protein sequence)
Recommended Name: Melanoma-associated antigen 5  
Size: 124 amino acids; 13016 Da
Secondary accessions: Q32MD0

Explore the universe of human proteins at neXtProt for MAGEA5: NX_P43359

Explore proteomics data for MAGEA5 at MOPED


See MAGEA5 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_066387.1  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR021072 Melanoma_ass_antigen_N
 IPR002190 MAGE

Graphical View of Domain Structure for InterPro Entry P43359

ProtoNet protein and cluster: P43359

UniProtKB/Swiss-Prot: MAGA5_HUMAN, P43359
Similarity: Contains 1 MAGE domain


MAGEA5 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: MAGA5_HUMAN, P43359
Function: Not known, though may play a role tumor transformation or progression. In vitro promotes cell viability
in melanoma cell lines

     Genatlas biochemistry entry for MAGEA5:
human melanoma antigen,family A,member 5,expressed in melanoma,testis

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for MAGEA5

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for MAGEA5 (MAGA5)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for MAGEA5 gene: 
NM_021049.4  

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000446757 ENST00000427663(uc004ffj.3 uc022cgy.1)
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Selected AceView cDNA sequences (see all 48):

AY531264 BG477105 BX109673 BG477436 BQ217649 BG477980 AI142010 CR622868 
BX335540 BE277360 CB158974 BE389926 BE730450 BX335541 AI200443 NM_021048 
BU167137 BE277068 BM458898 CD109866 BG478456 BX097006 AY310324 NM_021049 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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MAGEA5 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MAGEA5 Expression
About this image

MAGEA5 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

MAGEA5 Protein Expression

UniProtKB/Swiss-Prot: MAGA5_HUMAN, P43359
Tissue specificity: Expressed in many tumors of several types, such as melanoma, head and neck squamous cell
carcinoma, lung carcinoma and breast carcinoma, but not in normal tissues except for testes

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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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ENSEMBL Gene Tree for MAGEA5 (if available)
TreeFam Gene Tree for MAGEA5 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for MAGEA5 gene
MAGEA10-MAGEA5  
16 SIMAP similar genes for MAGEA5 using alignment to 1 protein entry:     MAGA5_HUMAN:
MAGEA12    MAGEA2B    MAGEA2    MAGEA4    MAGEA3    MAGEA6
MAGEA1    MAGEA8    MAGEA11    MAGEA9B    MAGEA9    MAGEA13P
MAGEB16    MAGEA10    MAGEC2    MAGEE1

MAGEA5 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MAGEA5 (see all 136)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr X posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1397093481,2
--151148530(+) TGATGA/CGTGTC 1 -- ds50010--------
rs1828954781,2
--151148566(+) CAACAA/GCACTG 1 -- ds50010--------
rs1876472471,2
--151148580(+) CTAAAA/GCACAA 1 -- ds50010--------
rs59251201,2
C--151148674(+) CACACC/TCTCTG 1 -- ds50014Minor allele frequency- T:0.00NA 6
rs736390611,2
C--151148712(+) CCCCCC/GCCGAT 1 -- ds50011Minor allele frequency- G:0.00WA 2
rs2110581,2
C,F,H--151148862(+) GGGCAT/CCTCTC 1 -- ds500114Minor allele frequency- C:0.02NS EA WA NA CSA 1099
rs1920231261,2
--151148911(+) CCCTGG/TGGGTA 1 -- ds50010--------
rs24719781,2
C,A--151149090(+) TTTTTA/TAAAAA 1 -- ut311Minor allele frequency- T:0.00NA 2
rs2105711,2
C,F,H--151149108(+) ACCGAA/GTAGAC 1 -- ut3111Minor allele frequency- G:0.01NS EA WA NA CSA 418
rs1875343101,2
--151149139(+) AATATC/TTTTTA 1 -- ut310--------

HapMap Linkage Disequilibrium report for MAGEA5 (151282526 - 151286444 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for MAGEA5:    About this table    
Variant IDTypeSubtypePubMed ID
nsv520971CNV Gain19592680

Locus Specific Mutation Databases (LSDB): MAGEA5

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 300340    OMIM disorders: --

5 diseases for MAGEA5:    About MalaCards
oral squamous cell carcinoma    dyskeratosis congenita    melanoma    lung cancer
squamous cell carcinoma


MAGEA5 for disorders           About GeneDecksing


Export disorders for MAGEA5 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MAGEA5 gene integrated from 10 sources:
(articles sorted by number of sources associating them with MAGEA5)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  2. The melanoma antigen gene (MAGE) family is clustered in the chromosomal band Xq28. (PubMed id 8575766)1, 3 Rogner U.C....Poustka A. (Genomics 1995)
  3. Structure, chromosomal localization, and expression of 12 genes of the MAGE family. (PubMed id 7927540)1, 2 De Plaen E.... Boon T. (Immunogenetics 1994)
  4. MAGE A1-A6 RT-PCR and MAGE A3 and p16 methylation analysis in induced sputum from patients with lung cancer and non-malignant lung diseases. (PubMed id 22134685)1 Shin K.C....Jeon C.H. (Oncol. Rep. 2012)
  5. Expression of melanoma-associated antigens in oral squamous cell carcinoma. (PubMed id 18197853)1 Ries J....Nkenke E. (amp 2008)
  6. MAGE-A, mMage-b, and MAGE-C proteins form complexes with KAP1 and suppress p53-dependent apoptosis in MAGE-positive cell lines. (PubMed id 17942928)2 Yang B.... Longley B.J. (Cancer Res. 2007)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  8. Quantitative evaluation of the expression of MAGE genes in tumors by limiting dilution of cDNA libraries. (PubMed id 10521804)1 Serrano A....Boon T. (Int. J. Cancer 1999)
  9. Proapoptotic signaling induced by RIG-I and MDA-5 results in type I interferon-independent apoptosis in human melanoma cells. (PubMed id 19620789)9 Besch R....Hartmann G. (J. Clin. Invest. 2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 4104 HGNC: 6803 AceView: MAGEA10andMAGEA5 Ensembl:ENSG00000242520 euGenes: HUgn4104
ECgene: MAGEA5 H-InvDB: MAGEA5

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MAGEA5 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for MAGEA5 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MAGEA5 gene:
Search GeneIP for patents involving MAGEA5

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 SwitchGear 3'UTR luciferase reporter plasmids for MAGEA5
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 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MAGEA5
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for MAGEA5
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for MAGEA5
 LSBio Antibodies in human, mouse, rat for MAGEA5
Customized transgenic rodents for:
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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