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Aliases for MAGEA4 Gene

Aliases for MAGEA4 Gene

  • Melanoma Antigen Family A4 2 3
  • Melanoma-Associated Antigen 4 2 3
  • Cancer/Testis Antigen 1.4 3 4
  • MAGE-41 Antigen 3 4
  • MAGE-X2 Antigen 3 4
  • MAGE-4 Antigen 3 4
  • MAGE4A 3 6
  • MAGE4B 3 6
  • MAGE4 3 4
  • CT1.4 3 4
  • Cancer/Testis Antigen Family 1, Member 4 3
  • Cancer/Testis Antigen Family 1 2
  • Melanoma Antigen Family A, 4 3
  • Member 4 2
  • MAGE-41 3
  • MAGE-X2 3

External Ids for MAGEA4 Gene

Previous Symbols for MAGEA4 Gene

  • MAGE4

Summaries for MAGEA4 Gene

Entrez Gene Summary for MAGEA4 Gene

  • This gene is a member of the MAGEA gene family. The members of this family encode proteins with 50 to 80% sequence identity to each other. The promoters and first exons of the MAGEA genes show considerable variability, suggesting that the existence of this gene family enables the same function to be expressed under different transcriptional controls. The MAGEA genes are clustered at chromosomal location Xq28. They have been implicated in some hereditary disorders, such as dyskeratosis congenita. At least four variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for MAGEA4 Gene

MAGEA4 (Melanoma Antigen Family A4) is a Protein Coding gene. Diseases associated with MAGEA4 include hepatocellular carcinoma and melanoma. An important paralog of this gene is MAGED1.

UniProtKB/Swiss-Prot for MAGEA4 Gene

  • Not known, though may play a role in embryonal development and tumor transformation or aspects of tumor progression

Gene Wiki entry for MAGEA4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MAGEA4 Gene

Genomics for MAGEA4 Gene

Genomic Location for MAGEA4 Gene

Start:
151,912,509 bp from pter
End:
151,925,170 bp from pter
Size:
12,662 bases
Orientation:
Plus strand

Genomic View for MAGEA4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MAGEA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MAGEA4 Gene

Regulatory Elements for MAGEA4 Gene

Transcription factor binding sites by QIAGEN in the MAGEA4 gene promoter:

Proteins for MAGEA4 Gene

  • Protein details for MAGEA4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P43358-MAGA4_HUMAN
    Recommended name:
    Melanoma-associated antigen 4
    Protein Accession:
    P43358
    Secondary Accessions:
    • Q14798

    Protein attributes for MAGEA4 Gene

    Size:
    317 amino acids
    Molecular mass:
    34899 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for MAGEA4 Gene

neXtProt entry for MAGEA4 Gene

Proteomics data for MAGEA4 Gene at MOPED

Post-translational modifications for MAGEA4 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys245 and Lys286

No data available for DME Specific Peptides for MAGEA4 Gene

Domains for MAGEA4 Gene

Protein Domains for MAGEA4 Gene

UniProtKB/Swiss-Prot:

MAGA4_HUMAN
Domain:
  • Contains 1 MAGE domain.:
    • P43358
genes like me logo Genes that share domains with MAGEA4: view

No data available for Gene Families for MAGEA4 Gene

Function for MAGEA4 Gene

Molecular function for MAGEA4 Gene

GENATLAS Biochemistry: human melanoma antigen,family A,member 4,expressed in melanoma,testis and placenta
UniProtKB/Swiss-Prot Function: Not known, though may play a role in embryonal development and tumor transformation or aspects of tumor progression

Gene Ontology (GO) - Molecular Function for MAGEA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 12525503
genes like me logo Genes that share ontologies with MAGEA4: view

Phenotypes for MAGEA4 Gene

GenomeRNAi human phenotypes for MAGEA4:
genes like me logo Genes that share phenotypes with MAGEA4: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MAGEA4 Gene

Localization for MAGEA4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MAGEA4 Gene COMPARTMENTS Subcellular localization image for MAGEA4 gene
Compartment Confidence
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for MAGEA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with MAGEA4: view

Pathways for MAGEA4 Gene

SuperPathways for MAGEA4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MAGEA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with MAGEA4: view

No data available for Pathways by source for MAGEA4 Gene

Transcripts for MAGEA4 Gene

Unigene Clusters for MAGEA4 Gene

Melanoma antigen family A, 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MAGEA4 Gene

No ASD Table

Relevant External Links for MAGEA4 Gene

GeneLoc Exon Structure for
MAGEA4
ECgene alternative splicing isoforms for
MAGEA4

Expression for MAGEA4 Gene

mRNA expression in normal human tissues for MAGEA4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MAGEA4 Gene

This gene is overexpressed in Testis (52.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MAGEA4 Gene

SOURCE GeneReport for Unigene cluster for MAGEA4 Gene Hs.37107

mRNA Expression by UniProt/SwissProt for MAGEA4 Gene

P43358-MAGA4_HUMAN
Tissue specificity: Expressed in many tumors of several types, such as melanoma, head and neck squamous cell carcinoma, lung carcinoma and breast carcinoma, but not in normal tissues except for testes and placenta
genes like me logo Genes that share expressions with MAGEA4: view

Orthologs for MAGEA4 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for MAGEA4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MAGEA4 36
  • 98.84 (n)
  • 97.16 (a)
MAGEA4 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700080O16Rik 37
  • 40 (a)
ManyToMany
3830417A13Rik 37
  • 38 (a)
ManyToMany
Magea1 37
  • 38 (a)
ManyToMany
Magea10 37
  • 42 (a)
ManyToMany
Magea2 37
  • 38 (a)
ManyToMany
Magea3 37
  • 39 (a)
ManyToMany
Magea4 37
  • 38 (a)
ManyToMany
Magea5 37
  • 39 (a)
ManyToMany
Magea6 37
  • 40 (a)
ManyToMany
Magea8 37
  • 39 (a)
ManyToMany
Species with no ortholog for MAGEA4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MAGEA4 Gene

ENSEMBL:
Gene Tree for MAGEA4 (if available)
TreeFam:
Gene Tree for MAGEA4 (if available)

Paralogs for MAGEA4 Gene

Pseudogenes.org Pseudogenes for MAGEA4 Gene

genes like me logo Genes that share paralogs with MAGEA4: view

Variants for MAGEA4 Gene

Sequence variations from dbSNP and Humsavar for MAGEA4 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1047246 -- 151,923,654(+) CCTGA(C/G)CAGAG utr-variant-5-prime, reference, missense
rs1047248 -- 151,923,748(+) GGTGC(A/G)CAGGC reference, synonymous-codon
rs1047251 - 151,924,181(+) ACCCC(A/G)CCAGC missense, reference
rs2245422 -- 151,912,382(+) CCTCT(C/T)GCCTC upstream-variant-2KB
rs2301192 -- 151,910,973(+) AGAAC(A/G)TTGTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MAGEA4 Gene

Variant ID Type Subtype PubMed ID
nsv510866 CNV Loss 20534489
nsv528228 CNV Gain 19592680
esv2656900 CNV Deletion 23128226
esv22619 CNV Gain 19812545
esv1005324 CNV Deletion 20482838
esv2664390 CNV Deletion 23128226
esv2740611 CNV Deletion 23290073

Relevant External Links for MAGEA4 Gene

HapMap Linkage Disequilibrium report
MAGEA4
Locus Specific Mutation Databases (LSDB)
MAGEA4

Disorders for MAGEA4 Gene

(1) University of Copenhagen DISEASES for MAGEA4 Gene

(28) Novoseek inferred disease relationships for MAGEA4 Gene

Disease -log(P) Hits PubMed IDs
testicular cancer 85.1 7
uterine neoplasms 72.1 1
melanoma 57.8 9
tumors 52 45
esophageal carcinoma 46.2 1

Relevant External Links for MAGEA4

Genetic Association Database (GAD)
MAGEA4
Human Genome Epidemiology (HuGE) Navigator
MAGEA4
genes like me logo Genes that share disorders with MAGEA4: view

No data available for UniProtKB/Swiss-Prot for MAGEA4 Gene

Publications for MAGEA4 Gene

  1. High-resolution structure of HLA-A*0201 in complex with a tumour- specific antigenic peptide encoded by the MAGE-A4 gene. (PMID: 11502003) Hillig R.C. … Hulsmeyer M. (J. Mol. Biol. 2001) 3 4 23
  2. Expression of MAGE genes in primary and metastatic cutaneous melanoma. (PMID: 7591235) Brasseur F. … Humblet Y. (Int. J. Cancer 1995) 3 23
  3. Alternative promoters of gene MAGE4a. (PMID: 9119398) De Plaen E. … Boon T. (Genomics 1997) 3 23
  4. Elevation of serum MAGE-4 protein levels and prediction of hepatocellular carcinogenesis in patients with liver cirrhosis. (PMID: 11985796) Yutani S. … Itoh K. (Jpn. J. Cancer Res. 2002) 3 23
  5. Prognostic relevance of MAGE-A4 tumor antigen expression in transitional cell carcinoma of the urinary bladder: a tissue microarray study. (PMID: 12209610) Kocher T. … Spagnoli G.C. (Int. J. Cancer 2002) 3 23

Products for MAGEA4 Gene

Sources for MAGEA4 Gene

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