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MAGEA4 Gene

protein-coding   GIFtS: 56

GC0XP150752
melanoma antigen family A, 4
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: MAGE4)
Services    

Aliases &
Descriptions
for MAGEA4

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section
Aliases
CT1.4 1, 2, 3
MAGE-41 1, 2
MAGE-X2 1, 2
MAGE4 2, 3
MAGE4A 1, 2, 5
MAGE4B 1, 2, 5
MGC21336 1, 2
OTTHUMP00000025889 2
OTTHUMP00000025890 2
Descriptions
Cancer/testis antigen 1.4 3
MAGE-4 antigen 3
MAGE-41 antigen 3
MAGE-X2 antigen 3
cancer/testis antigen family 1, member 4 2
melanoma antigen family A, 4 2
melanoma-associated antigen 4 2
External Ids
HGNC: 68021
Entrez Gene: 41032
UniProtKB: P433583
Ensembl: ENSG000001473817
Search outside databases for aliases for MAGEA4 gene

Previous GC identifers: GC0XP145421 GC0XP147744 GC0XP148829 GC0XP149702 GC0XP149699

Summaries
for MAGEA4

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

 EntrezGene summary for MAGEA4:
This gene is a member of the MAGEA gene family. The members of this family encode proteins with 50
to 80% sequence identity to each other. The promoters and first exons of the MAGEA genes show
considerable variability, suggesting that the existence of this gene family enables the same
function to be expressed under different transcriptional controls. The MAGEA genes are clustered
at chromosomal location Xq28. They have been implicated in some hereditary disorders, such as
dyskeratosis congenita. At least four variants encoding the same protein have been found for this
gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: MAGA4_HUMAN, P43358
Function: Not known, though may play a role in embryonal development and tumor transformation or
aspects of tumor progression

Gene Wiki entry for MAGEA4

Genomic Location
for MAGEA4

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

 Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the MAGEA4 gene  

Entrez Gene cytogenetic band: Xq28   Ensembl cytogenetic band:  Xq28   HGNC cytogenetic band: Xq28

MAGEA4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP150752:     (about GC identifiers)

Start:
 150,831,652 bp from pter
End:
 150,844,298 bp from pter
Size:
 12,647 bases
Orientation:
 plus strand
RefSeq DNA sequence:
NC_000023.9  NT_011726.13  

Proteins
for MAGEA4

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

 UniProtKB/Swiss-Prot: MAGA4_HUMAN, P43358 (See protein sequence)
Recommended Name: Melanoma-associated antigen 4  
Size: 317 amino acids; 34929 Da
PDB structure from and Proteopedia :
1I4F (3D)    2WA0 (3D)    
Secondary accessions: Q14798

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


    • REFSEQ proteins (4 alternative transcripts): 
    NP_001011548.1  NP_001011549.1  NP_001011550.1  NP_002353.3  


    ENSEMBL proteins: 
    ENSP00000359362 ENSP00000377497 ENSP00000359365 ENSP00000377498 ENSP00000276344 ENSP00000359360 
    ENSP00000353379 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (MAGEA4)
    Human Recombinant Proteins from Abnova (MAGEA4)
                  OriGene Purified Recombinant Human Protein: MAGEA4 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575 cellular_component ND--
    About this table

    Antibodies for MAGEA4: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for MAGEA4
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    Antibodies from Abcam (MAGEA4), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (MAGEA4)
    Novus Biologicals Antibodies for MAGEA4

    Assays for MAGEA4: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    Protein Domains/
    Families
    for MAGEA4

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro domain/family:
     IPR002190 MAGE


       GeneDecks  MAGEA4 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P43358

    ProtoNet protein and cluster: P43358

    1 Blocks protein family: IPB002190 MAGE protein

    UniProtKB/Swiss-Prot: MAGA4_HUMAN, P43358
    Similarity: Contains 1 MAGE domain

    Gene Function
    for MAGEA4

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section
    Inhib.
    RNA:    		Invitrogen RNAi Products for gene knock-down (MAGEA4)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (MAGEA4)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_002362

                  Applied Biosystems Silencer® siRNAs for MAGEA4

                  Sigma-Aldrich siRNA for MAGEA4  
                         Sigma-Aldrich shRNA for MAGEA4  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for MAGEA4
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 4): NM_001011548
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): NM_001011548
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_001011548 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001011549

    UniProtKB/Swiss-Prot: MAGA4_HUMAN, P43358
    Function: Not known, though may play a role in embryonal development and tumor transformation or
    aspects of tumor progression

    Genatlas biochemistry entry for MAGEA4:
    human melanoma antigen,family A,member 4,expressed in melanoma,testis and placenta

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674 molecular_function ND--
    GO:0005515 protein binding IPI12525503 14739298
    About this table

    Pathways & Interactions
    for MAGEA4

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  MAGEA4 


    5/9 Interacting proteins for MAGEA4 (ENSP000002763443 P433581, 2) via UniProtKB, MINT, and/or STRING (see all 9 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PSMD10O758321EBI-743122, EBI-752185
    ZBTB17Q131051EBI-743122, EBI-372156
    TEKT4Q8WW242MINT-67802
    TRIM69Q86WT62MINT-67646
    UQCRBP149272MINT-66319
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150 biological_process ND--
    About this table

    Drugs & Compounds
    for MAGEA4

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for MAGEA4

    Transcripts
    for MAGEA4

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section
    Inhib.
    RNA:    		Invitrogen RNAi Products for gene knock-down (MAGEA4)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (MAGEA4)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_002362

                  Sigma-Aldrich siRNA for MAGEA4  
                         Sigma-Aldrich shRNA for MAGEA4  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001011548  NM_001011549  NM_001011550  NM_002362  

    REFSEQ mRNAs for MAGEA4 gene (4 alternative transcripts): 

    NM_001011548.1   NM_001011549.1   NM_001011550.1   NM_002362.4   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001011548  NM_001011549  NM_001011550  NM_002362  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 4): NM_001011548
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 4): NM_001011548
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_001011548 

    Additional cDNA sequence: 

    AK300179.1 AK313862.1 AY954624.1 BC017723.1 BC096712.1 CR622709.1 CR623041.1 D32075.1 
    D32077.1 U10340.1 

    2 DOTS entries:

    DT.309111  DT.97775458 

    24/69 AceView cDNA sequences (see all 69 ):

    CB123950 CB123276 CR622709 CB120212 AI863022 CB121933 BM556490 AI805352 
    CB118648 BM562465 CR623041 CB120460 BG023849 U10340 NM_002362 BX337705 
    AW103946 BM472906 BX479311 BX361006 BG116297 AI805537 BM467407 BG115115 

    highest scoring ESTs for MAGEA4:

    AA857809 AI805352 AI805537 AI863022 AL045429 AW103946 AW193638 AW194089 AW273455 AW383186 

    Unigene Cluster for MAGEA4:

    Melanoma antigen family A, 4
    Hs.37107  [show with all ESTs]
    Unigene Representative Sequence: BC017723


    GeneLoc Exon Structure

    7 Ensembl transcripts including schematic representations:
    ENST00000370337  ENST00000393920  ENST00000370340  ENST00000393921  ENST00000276344  ENST00000370335  
    ENST00000360243  

    Expression
    for MAGEA4

    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    MAGEA4 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for MAGEA4

    1 / 2 / 3

    3 probe-sets matching MAGEA4 gene


    		Affymetrix
    probe-set    		 Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    		36302_f_at2, 3 U95-A 5 1.00 0.73 1.00 1.00 U10688 0.20 1.00 0.72 1

    		214254_at2, 3 U133-A 1 1.00 1.00 -- -- AW438674 0.80 1.00 0.91 1

    		214254_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.37107

    Expression variation in blood from EXPOLDB for MAGEA4

    UniProtKB/Swiss-Prot: MAGA4_HUMAN, P43358
    Tissue specificity: Expressed in many tumors of several types, such as melanoma, head and neck
    squamous cell carcinoma, lung carcinoma and breast carcinoma, but not in normal tissues except for
    testes and placenta

    Orthologs
    for MAGEA4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section
    Orthologs for MAGEA4 gene from 3 species
    Organism Gene Locus Description Human
    Similarity    		 NCBI accessions
    chimpanzee
    (Pan troglodytes)    		 MAGEA41   -- melanoma antigen family A, 4 98.84(n)
    97.16(a)    		 465910  XM_521309.2  XP_521309.2 
    rat
    (Rattus norvegicus)    		 Magea91   -- melanoma antigen, family A, 9 58.33(n)
    43.57(a)    		 309261  XM_219729.4  XP_219729.4 
    mouse
    (Mus musculus)    		 Magea91   -- melanoma antigen, family A, 9 55.98(n)
    38.03(a)    		 195772  NM_181855.1  NP_862903.1 
    About this table        Species with no ortholog for MAGEA4

    ENSEMBL Gene Tree for MAGEA4

    Paralogs
    for MAGEA4

    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for MAGEA4 gene
    MAGEA32  MAGEA2B2  MAGEA82  MAGEA122  MAGEA92  MAGEA9B2  MAGEA112  MAGEA12  
    MAGEA102  MAGEA62  MAGEA22  

    SNPs/Variants
    for MAGEA4

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/33 NCBI SNPs in MAGEA4 are shown (see all 33 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 29)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr X posSequenceRecsAA
    Chg    		TypeMoreRecsAllele
    freq    		PopTotal
    sample    		More
    ------------
    rs59701601,2
    		A,C,F,H150844654(+) TGAGCG/AGTTCC 4 -- ng314Minor allele frequency- A:0.21EU EA WA 418
    --
    rs10472511,2
    		A,C,F150843309(+) ACCCCA/GCCAGC 4 A/T mis1 ese38Minor allele frequency- G:0.41MN NA EU EA WA 536
    --
    rs10472461,2
    		A,F,H150842782(+) CCTGAG/CCAGAG 4 -- ut51 ese34Minor allele frequency- C:0.47EU EA WA 418
    rs28552631,2
    		A,O150844552(+) AAACTC/GCATTT 4 -- ng310--------
    --
    rs10472481,2
    		A,F,H150842876(+) GGTGCG/ACAGGC 4 A/A syn1 ese34Minor allele frequency- A:0.43EU EA WA 398
    rs48286701,2
    		A,C,F,H150841917(+) CGGAGG/TGGGAG 4 -- int17Minor allele frequency- T:0.42EU EA WA NA 517
    rs48286691,2
    		A,C,F,H150840875(+) GAGAGA/GGTTTG 4 -- int1 trp34Minor allele frequency- G:0.47EU EA WA 418
    rs59247021,2
    		A,C,F,H150841548(+) GAGTAA/CCCCAC 4 -- int18Minor allele frequency- C:0.36EU EA WA 628
    rs59247011,2
    		A,C150841014(+) TCCTCC/TTTTAG 4 -- int1 trp30--------
    --
    rs30209771,2
    		A150838312(+) AAGTCA/GCATGG 4 -- int10--------
    About this table

    HapMap Linkage Disequilibrium images for MAGEA4 (up to first 250kb)

    Disorders & Mutations
    for MAGEA4

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    		 OMIM: 300175

    10/28 Novoseek disease relationships for MAGEA4 gene (see all 28 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    testicular cancer 84.90 6 16467087 (2), 14991579 (1), 12681059 (1), 12875607 (1) (see all 5)
    uterine neoplasms 73.06 1 14695148 (1)
    melanoma 58.07 13 9618514 (1), 11502003 (1), 16845331 (1), 12209997 (1) (see all 9)
    tumors 52.32 56 11983123 (4), 14695148 (4), 10842198 (4), 11753951 (3) (see all 30)
    esophageal carcinoma 47.71 1 10540345 (1)
    cancer 46.75 14 16596224 (3), 10540345 (2), 9033629 (2), 16061876 (2) (see all 8)
    seminoma 44.25 13 11753951 (4), 12605640 (3), 17993720 (1)
    hepatocellular carcinoma 40.53 6 9369941 (2), 11983123 (1), 12747756 (1), 18942708 (1) (see all 5)
    carcinoma 40.28 18 14695148 (4), 12209997 (3), 9033629 (2), 16151806 (2) (see all 10)
    carcinoma non-small cell lung 36.57 3 16596224 (2), 16651421 (1)
    About this table

    Medical News
    for MAGEA4

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    		   --

    Publications
    for MAGEA4

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    		10/84 PubMed articles for MAGEA4 gene (see all 84 ):

    Search for MAGEA4

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing MAGEA4

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section
    Entrez Gene: 4103 HGNC: 6802 AceView: MAGEA4 Ensembl:ENSG00000147381 euGenes: HUgn4103
    ECgene: MAGEA4 H-InvDB: MAGEA4

    Other Databases showing MAGEA4

    (According to HUGE)
    About This Section

    		   --

    Specialized Databases showing MAGEA4

    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    ATLAS Chromosomes in Cancer entry for MAGEA4 Genetics and Cytogenetics in Oncology and Haematology

    Licensable Technologies
    for MAGEA4

    (Available from WIS Yeda, Salk, Tufts)
    About This Section

    		  --

    Services
    for MAGEA4

    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for MAGEA4:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
    		  Free SNP selection tool



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     Tagged/untagged cDNA clones
     Validated SYBR primer pairs
     Purified proteins from HEK293T cells
     Western blot validated antibodies
     shRNA in GFP-retroviral vector
     Search Tocris compounds for MAGEA4




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for MAGEA4

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