MAGEA13P Gene
pseudogene GIFtS: 20
GCID: GC0XP137560
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Melanoma Antigen Family A, 13 Pseudogene
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Aliases
for MAGEA13P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
About This Section
|
| Aliases |
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| Melanoma Antigen Family A, 13 Pseudogene1 2 |
Export aliases for MAGEA13P gene to outside databasesPrevious GC identifers: GC0XP137388 GC0XP126831 |
Summaries
for MAGEA13P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
GeneCards Summary for MAGEA13P Gene: 
MAGEA13P (melanoma antigen family A, 13 pseudogene) is a pseudogene. Diseases associated with MAGEA13P include melanoma.
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Genomic Views
for MAGEA13P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 73),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MAGEA13P gene promoter:
Nkx3-1 Nkx3-1 v4 AP-4 Nkx3-1 v1 NF-kappaB Evi-1 Nkx3-1 v2 Nkx3-1 v3 NF-kappaB1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MAGEA13P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MAGEA13P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xq26.3 Ensembl cytogenetic band: Xq26.3 HGNC cytogenetic band: Xq26.3MAGEA13P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP137560: view genomic region
(about GC identifiers)
Start:
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137,564,847 bp from pter |
End:
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137,566,443 bp from pter |
Size:
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1,597 bases |
Orientation:
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plus strand |
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Proteins
for MAGEA13P gene
(According to
UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MAXQB
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Ontologies according to Gene
Ontology Consortium 01 Oct 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
About This Section
|
UniProtKB/Swiss-Prot: MA13P_HUMAN, A6NCF6 (See
protein sequence)Recommended Name: Putative MAGE domain-containing protein MAGEA13P Size: 341 amino acids; 37899 Da
Caution: Could be the product of a pseudogeneExplore the universe of human proteins at neXtProt for MAGEA13P: NX_A6NCF6
Post-translational modifications:
View modification sites using PhosphoSitePlusView neXtProt modification sites for NX_A6NCF6
MAGEA13P Protein expression data from MOPED1, PaxDb2 and
MAXQB3 : --
Human Recombinant Protein Products for MAGEA13P:
MAGEA13P Antibody Products:
Assay Products for MAGEA13P: |
Protein
Domains /
Families
for MAGEA13P gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| 2 InterPro protein domains:Graphical View of Domain Structure for InterPro Entry A6NCF6 ProtoNet protein and cluster: A6NCF6 UniProtKB/Swiss-Prot: MA13P_HUMAN, A6NCF6Similarity: Contains 1 MAGE domain
MAGEA13P for domains About GeneDecksing
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Function
for MAGEA13P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
Vector BioLabs,
and Sirion Biotech,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene.)
About This Section
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Animal Models:
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for MAGEA13P | |  | Search LifeMap BioReagents cell lines for MAGEA13P | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAGEA13P |
Pathways & Interactions
for MAGEA13P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MAGEA13P
|
Drugs & Compounds
for MAGEA13P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for MAGEA13P (MA13P)
Search CenterWatch for drugs/clinical trials and news about MAGEA13P
|
Transcripts
for MAGEA13P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Sirion Biotech,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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2 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000418272 ENST00000340794
1 AceView cDNA sequence: CA424528
GeneLoc Exon Structure
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Expression
for MAGEA13P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| MAGEA13P expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for MAGEA13P
Primer
Products: |  | OriGene qSTAR qPCR primer pairs in human, mouse for MAGEA13P
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat MAGEA13P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MAGEA13P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MAGEA13P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAGEA13P |
Orthologs
for MAGEA13P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for MAGEA13P (if available)
TreeFam Gene Tree for MAGEA13P (if available) |
Paralogs
for MAGEA13P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for MAGEA13P gene
18/33 SIMAP similar genes for MAGEA13P using alignment to 1 protein entry: MA13P_HUMAN(see all similar genes):MAGEC4 MAGEC1 MAGEA8 MAGEA12 MAGEA4 MAGEA10
MAGEA11 MAGEA2B MAGEB16 MAGEB18 MAGEA9B MAGEA2
MAGEA6 MAGEB17 MAGEC2 MAGEE1 MAGEA9 MAGEB10
MAGEA13P for paralogs About GeneDecksing
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Genomic Variants
for MAGEA13P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for MAGEA13P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| 2  diseases for MAGEA13P: About MalaCardsmelanoma
MAGEA13P for disorders About GeneDecksing
Export disorders for MAGEA13P gene to outside databases
|
Publications
for MAGEA13P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed article for MAGEA13P gene integrated from 9 sources:
(articles sorted by number of sources associating them with MAGEA13P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
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External Searches for MAGEA13P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing MAGEA13P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing MAGEA13P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MAGEA13P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for MAGEA13P gene:
Search GeneIP for patents involving MAGEA13P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for MAGEA13P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat MAGEA13P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MAGEA13P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MAGEA13P | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MAGEA13P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MAGEA13P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MAGEA13P |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MAGEA13P |
|  |  |  |  | | | | Search ThermoFisher Antibodies for MAGEA13P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat MAGEA13P |
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