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Aliases & Descriptions for MADCAM1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases MACAM1 1 , 2 MAdCAM-1 3 hMAdCAM-1 3
Descriptions mucosal addressin cell adhesion molecule-1 2 mucosal vascular addressin cell adhesion molecule 1 2
Search outside databases for aliases for MADCAM1 genePrevious GC identifers: GC19P000507 GC19P000531 GC19P000436 GC19P000448 GC19P000449
Summaries for MADCAM1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for MADCAM1 : The protein encoded by this gene is an endothelial cell adhesion molecule that interactspreferentially with the leukocyte beta7 integrin LPAM-1 (alpha4beta7), L-selectin, and VLA-4(alpha4beta1) on myeloid cells to direct leukocytes into mucosal and inflamed tissues. It is amember of the immunoglobulin family and is similar to ICAM1 and VCAM1. At least sevenalternatively spliced transcripts encoding different protein isoforms have been found for thisgene, but the full-length nature of some variants has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: MADCA_HUMAN, Q13477 Function : Cell adhesion leukocyte receptor expressed by mucosal venules, helps to direct lymphocytetraffic into mucosal tissues including the Peyer patches and the intestinal lamina propria. It canbind both integrin alpha-4/beta-7 and L-selectin, regulating both the passage and retention ofleukocytes. Isoform 2, lacking the mucin-like domain, may be specialized in supporting integrinalpha-4/beta-7-dependent adhesion strengthening, independent of L-selectin binding
Genomic Location for MADCAM1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the MADCAM1 gene Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.3 HGNC cytogenetic band: 19p13.3 MADCAM1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P000450:
(about GC identifiers )
Start:
447,490 bp from pter
End:
456,343 bp from pter
Size:
8,854 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011255.14 Proteins for MADCAM1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MADCA_HUMAN, Q13477 (See
protein sequence )Recommended Name: Mucosal addressin cell adhesion molecule 1 precursor Size : 382 amino acids; 40155 Da
Subunit : Homodimer (Probable)
Subcellular location : Membrane; Single-pass type I membrane protein
PDB structure from and Proteopedia : 1BQS (3D)
 1GSM (3D)
 
Secondary accessions : A5PKV4 O60222 O75867Alternative splicing : 2 isoforms : Q13477-1 Q13477-2 (Additional isoforms seem to exist)
Post-translational modifications:
The Ser/Thr-rich mucin-like domain may provide possible sites for O-glycosylation (By similarity)1
REFSEQ proteins (2 alternative transcripts):
NP_570116.2 NP_570118.1 ENSEMBL proteins: ENSP00000346203 ENSP00000372131 ENSP00000215637 ENSP00000304247 ENSP00000372130 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for MADCAM1: Assays for MADCAM1:
Protein
Domains/ Families for MADCAM1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13477 ProtoNet protein and cluster: Q13477
1 Blocks protein family : IPB003599 Immunoglobulin subtype UniProtKB/Swiss-Prot: MADCA_HUMAN, Q13477 Similarity : Contains 2 Ig-like (immunoglobulin-like) domains
Gene Function for MADCAM1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_130760 Applied Biosystems Silencer ® siRNAs for MADCAM1 Sigma-Aldrich siRNA for MADCAM1 Sigma-Aldrich shRNA Panels and shRNA for MADCAM1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_130760                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_130760                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_130760  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_130760 UniProtKB/Swiss-Prot: MADCA_HUMAN, Q13477 Function : Cell adhesion leukocyte receptor expressed by mucosal venules, helps to direct lymphocytetraffic into mucosal tissues including the Peyer patches and the intestinal lamina propria. It canbind both integrin alpha-4/beta-7 and L-selectin, regulating both the passage and retention ofleukocytes. Isoform 2, lacking the mucin-like domain, may be specialized in supporting integrinalpha-4/beta-7-dependent adhesion strengthening, independent of L-selectin binding
Genatlas biochemistry entry for MADCAM1 :mucosal vascular addressin cell adhesion molecule 1,ligand for leukocyte B7 integrin (LPAM-1) Lselectin,VLA-4 on myeloid cells,with two alternatively spliced forms,homing leukocytes to mucosalinflammed tissues 1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
IEA --
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Pathways & Interactions for MADCAM1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for MADCAM1 5/29 Interacting proteins for MADCAM1 (ENSP00000346203 3 ) via UniProtKB, MINT, and/or STRING (see all 29
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for MADCAM1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for MADCAM1 5 Novoseek chemical compound relationships for MADCAM1 gene
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Transcripts for MADCAM1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_130760 Sigma-Aldrich siRNA for MADCAM1 Sigma-Aldrich shRNA Panels and shRNA for MADCAM1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_130760 NM_130762
REFSEQ mRNAs for MADCAM1 gene (2 alternative transcripts): NM_130760.2 NM_130762.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_130760 NM_130762
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_130760                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_130760                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_130760  
Additional cDNA sequence: AK092211.1 AY732484.1 AY819760.1 BC136408.1 BC137506.1 BC137507.1 BC142629.1 BC144065.1 DQ076657.1 U43628.1 U82483.1
4 DOTS entries : DT.409211 DT.92360074 DT.99932820 DT.99965995
18 AceView cDNA sequences :NM_130762 AI131233 BI821776 AW340299 AA678836 AA928768 BM702750 NM_130760 U82483 AA668527 U43628 AA705935 NM_130761 AK092211 AW340202 T54621 T54705 BE173884
highest scoring ESTs for MADCAM1 :AA668527 AA705935 AK092211 AW340202 BM702750 U43628 U82483 AA928768 AI131233 AW340299
Unigene Cluster for MADCAM1: Mucosal vascular addressin cell adhesion molecule 1 Hs.102598 [show with all ESTs ] Unigene Representative Sequence: AK092211 GeneLoc Exon Structure 5 Ensembl transcripts including schematic representations : ENST00000354255
ENST00000382684
ENST00000215637
ENST00000346144
ENST00000382683
Expression for MADCAM1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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MADCAM1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for MADCAM1 1 / 2 / 3
3 probe-sets matching MADCAM1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCTCACGTCTSOURCE GeneReport for Unigene cluster: Hs.102598 Expression variation in blood from EXPOLDB for MADCAM1
UniProtKB/Swiss-Prot: MADCA_HUMAN, Q13477 Tissue specificity : Highly expressed on high endothelial venules (HEV) and lamina propia venulesfound in the small intestine, and to a lesser extent in the colon and spleen. Very low levels ofexpression found in pancreas and brain. Not expressed in the thymus, prostate, ovaries, testis,heart, placenta, lung, liver, skeletal muscle, kidneys or peripheral blood leukocytes
Orthologs for MADCAM1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for MADCAM1 gene from 3 species
About this table Species with no ortholog for MADCAM1 ENSEMBL Gene Tree for MADCAM1 Paralogs for MADCAM1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for MADCAM1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: MADCA_HUMAN, Q13477 Polymorphism : The number of repeats in the mucin domain varies between 5 and 8 repeats
HapMap Linkage Disequilibrium images for MADCAM1 (up to first 250kb)
Disorders & Mutations for MADCAM1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 102670 10/16 Novoseek disease relationships for MADCAM1 gene (see all 16
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
inflammatory bowel diseases
67.20
20
11472325 (5), 10562584 (2), 11343233 (2), 11481030 (1) (see all 8 )
colitis
49.07
4
16917232 (2), 12625840 (1)
ileitis
46.65
3
16401463 (2), 15699171 (1)
inflammation
43.59
20
10661685 (2), 9036954 (2), 16401463 (2), 10562584 (1) (see all 12 )
malt lymphoma
42.31
2
11504840 (1), 14669317 (1)
lymphoma t-cell
40.49
1
10508262 (1)
lymphoma low-grade
40.30
1
11504840 (1)
cholangitis primary sclerosing
35.46
5
11343233 (3), 16750586 (2)
colitis ulcerative
32.07
3
9212736 (1), 19067429 (1), 9214052 (1)
lymphoma
31.49
2
7517418 (1), 7687523 (1)
About this table Human Genome Epidemiology Navigator: MADCAM1 (2 documents)
Medical News for MADCAM1 (Possibly Related Articles in
Doctor's Guide )
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Publications for MADCAM1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/134 PubMed articles for MADCAM1 gene (see all 134
): Human mucosal addressin cell adhesion molecule-1 (MAdCAM-1) demonstrates structural and functional similarities to the alpha 4 beta 7-integrin binding domains of murine MAdCAM-1, but extreme divergence of mucin-like sequences. (PubMed id 8609404) 1, 2, 3, 4 Shyjan A.M....Briskin M.J. (1996) Genomic organization, chromosomal mapping, and analysis of the 5' promoter region of the human MAdCAM-1 gene. (PubMed id 9162097) 1, 2, 3, 4 Leung E.... Krissansen G.W. (1997) The structure of immunoglobulin superfamily domains 1 and 2 of MAdCAM-1 reveals novel features important for integrin recognition. (PubMed id 9655832) 1, 3, 4 Tan K....Wang J.H. (1998) A reassessment of the MAdCAM-1 structure and its role in integrin recognition. (PubMed id 11807247) 1, 3, 4 Dando J.... Brady R.L. (2002) Cloning of the mucosal addressin MAdCAM-1 from human brain: identification of novel alternatively spliced transcripts. (PubMed id 8989586) 1, 3, 4 Leung E....Krissansen G.W. (1996) The DNA sequence and biology of human chromosome 19. (PubMed id 15057824) 3, 4 Grimwood J.... Lucas S.M. (2004) Mechanisms of MAdCAM-1 gene expression in human intestinal microvascular endothelial cells. (PubMed id 15483224) 1, 3 Ogawa H....Rafiee P. (2005) Structure-function analysis of the integrin beta 7 subunit: identification of domains involved in adhesion to MAdCAM-1. (PubMed id 9233649) 1, 3 Tidswell M....Erle D.J. (1997) Human mucosal addressin cell adhesion molecule-1 is preferentially expressed in intestinal tract and associated lymphoid tissue. (PubMed id 9212736) 1, 3 Briskin M....Ringler D.J. (1997) CCL25 and CCL28 promote alpha4 beta7-integrin-dependent adhesion of lymphocytes to MAdCAM-1 under shear flow. (PubMed id 18308860) 1, 3 Miles A....Adams D.H. (2008)
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Genome Databases showing MADCAM1
(According to
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HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing MADCAM1
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Specialized Databases showing MADCAM1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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