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Aliases for MACROD2-IT1 Gene

Subcategory (RNA class) for MACROD2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MACROD2-IT1 Gene

  • MACROD2 Intronic Transcript 1 2 3 5
  • MACROD2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 20 Open Reading Frame 68 2
  • Non-Protein Coding RNA 227 2
  • NCRNA00227 3
  • BA467D7.4 3
  • C20orf68 3

External Ids for MACROD2-IT1 Gene

Previous HGNC Symbols for MACROD2-IT1 Gene

  • C20orf68
  • NCRNA00227

Previous GeneCards Identifiers for MACROD2-IT1 Gene

  • GC20U900692

Summaries for MACROD2-IT1 Gene

GeneCards Summary for MACROD2-IT1 Gene

MACROD2-IT1 (MACROD2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MACROD2-IT1 Gene

Genomics for MACROD2-IT1 Gene

Regulatory Elements for MACROD2-IT1 Gene

Enhancers for MACROD2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around MACROD2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MACROD2-IT1 Gene

Chromosome:
20
Start:
14,554,384 bp from pter
End:
14,636,524 bp from pter
Size:
82,141 bases
Orientation:
Plus strand

Genomic View for MACROD2-IT1 Gene

Genes around MACROD2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MACROD2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MACROD2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MACROD2-IT1 Gene

Proteins for MACROD2-IT1 Gene

Post-translational modifications for MACROD2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MACROD2-IT1 Gene

Domains & Families for MACROD2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MACROD2-IT1 Gene

Function for MACROD2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MACROD2-IT1 Gene

Localization for MACROD2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MACROD2-IT1 Gene

Pathways & Interactions for MACROD2-IT1 Gene

SuperPathways for MACROD2-IT1 Gene

No Data Available

Interacting Proteins for MACROD2-IT1 Gene

Gene Ontology (GO) - Biological Process for MACROD2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MACROD2-IT1 Gene

Drugs & Compounds for MACROD2-IT1 Gene

No Compound Related Data Available

Transcripts for MACROD2-IT1 Gene

mRNA/cDNA for MACROD2-IT1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MACROD2-IT1 Gene

No ASD Table

Relevant External Links for MACROD2-IT1 Gene

GeneLoc Exon Structure for
MACROD2-IT1
ECgene alternative splicing isoforms for
MACROD2-IT1

Expression for MACROD2-IT1 Gene

mRNA expression in normal human tissues for MACROD2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for MACROD2-IT1 Gene

This gene is overexpressed in Testis (x44.4), Skin - Sun Exposed (Lower leg) (x4.4), and Skin - Not Sun Exposed (Suprapubic) (x4.3).
genes like me logo Genes that share expression patterns with MACROD2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MACROD2-IT1 Gene

Orthologs for MACROD2-IT1 Gene

Evolution for MACROD2-IT1 Gene

ENSEMBL:
Gene Tree for MACROD2-IT1 (if available)
TreeFam:
Gene Tree for MACROD2-IT1 (if available)

No data available for Orthologs for MACROD2-IT1 Gene

Paralogs for MACROD2-IT1 Gene

No data available for Paralogs for MACROD2-IT1 Gene

Variants for MACROD2-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MACROD2-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv241n21 CNV loss 19592680
dgv4250n100 CNV loss 25217958
dgv7464n54 CNV loss 21841781
dgv7465n54 CNV loss 21841781
esv2661642 CNV deletion 23128226
esv2722209 CNV deletion 23290073
esv2763220 CNV gain 21179565
esv3645318 CNV loss 21293372
esv3645319 CNV loss 21293372
esv3645320 CNV loss 21293372
esv3645321 CNV loss 21293372
esv3645322 CNV loss 21293372
esv3645323 CNV loss 21293372
esv3893293 CNV loss 25118596
esv8999 CNV loss 19470904
nsv1055269 CNV loss 25217958
nsv1055559 CNV loss 25217958
nsv1058120 CNV loss 25217958
nsv1061504 CNV loss 25217958
nsv1063430 CNV loss 25217958
nsv1064008 CNV loss 25217958
nsv1064721 CNV loss 25217958
nsv1138922 CNV deletion 24896259
nsv472548 CNV novel sequence insertion 20440878
nsv517905 CNV loss 19592680
nsv585446 CNV loss 21841781
nsv585450 CNV loss 21841781
nsv585451 CNV loss 21841781
nsv833926 CNV gain 17160897
nsv962559 CNV duplication 23825009

Relevant External Links for MACROD2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MACROD2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for MACROD2-IT1 Gene

Disorders for MACROD2-IT1 Gene

Relevant External Links for MACROD2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MACROD2-IT1

No disorders were found for MACROD2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MACROD2-IT1 Gene

Publications for MACROD2-IT1 Gene

No publications were found for MACROD2-IT1 Gene.

Products for MACROD2-IT1 Gene

Sources for MACROD2-IT1 Gene

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