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Aliases for MACROD2-AS1 Gene

Subcategory (RNA class) for MACROD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MACROD2-AS1 Gene

  • MACROD2 Antisense RNA 1 2 3 5
  • MACROD2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 186 2
  • BA318C17.1 3
  • NCRNA00186 3

External Ids for MACROD2-AS1 Gene

Previous HGNC Symbols for MACROD2-AS1 Gene

  • NCRNA00186

Summaries for MACROD2-AS1 Gene

GeneCards Summary for MACROD2-AS1 Gene

MACROD2-AS1 (MACROD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MACROD2-AS1 Gene

Genomics for MACROD2-AS1 Gene

Regulatory Elements for MACROD2-AS1 Gene

Enhancers for MACROD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G014878 1.2 Ensembl ENCODE 11.3 +50.0 50009 2.2 FOXA2 FEZF1 SLC30A9 GATA2 FOS ZNF263 ZHX2 JUNB TBX21 KAT8 MACROD2-AS1 GC20P014757
GH20G014950 0.9 Ensembl ENCODE 12 -22.3 -22255 2.3 STAT1 JUN HLF ZNF384 RAD21 NR2F2 JUND GATA2 CREB1 FOS MACROD2-AS1 ENSG00000237832 GC20M015021 RNU6-1159P
GH20G014977 0.9 ENCODE 10.9 -49.8 -49779 2.8 FOXA2 ATF1 MLX YY1 SLC30A9 FOS PPARG KAT8 MIER3 MAFF ENSG00000237832 MACROD2-AS1 RNU6-1159P GC20M015021
GH20G014918 0.8 Ensembl ENCODE 0.4 +9.9 9875 1.5 STAT1 GATA3 STAT3 CEBPB EP300 WT1 MAFK MACROD2-AS1 GC20P014757
GH20G014915 0.5 ENCODE 0.4 +13.9 13880 0.5 JUND REST RAD21 MACROD2-AS1 GC20P014757
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MACROD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MACROD2-AS1 Gene

Chromosome:
20
Start:
14,884,253 bp from pter
End:
14,929,518 bp from pter
Size:
45,266 bases
Orientation:
Minus strand

Genomic View for MACROD2-AS1 Gene

Genes around MACROD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MACROD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MACROD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MACROD2-AS1 Gene

Proteins for MACROD2-AS1 Gene

Post-translational modifications for MACROD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MACROD2-AS1 Gene

Domains & Families for MACROD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MACROD2-AS1 Gene

Function for MACROD2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MACROD2-AS1 Gene

Localization for MACROD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MACROD2-AS1 Gene

Pathways & Interactions for MACROD2-AS1 Gene

SuperPathways for MACROD2-AS1 Gene

No Data Available

Interacting Proteins for MACROD2-AS1 Gene

Gene Ontology (GO) - Biological Process for MACROD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MACROD2-AS1 Gene

Drugs & Compounds for MACROD2-AS1 Gene

No Compound Related Data Available

Transcripts for MACROD2-AS1 Gene

mRNA/cDNA for MACROD2-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MACROD2-AS1 Gene

MACROD2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MACROD2-AS1 Gene

No ASD Table

Relevant External Links for MACROD2-AS1 Gene

GeneLoc Exon Structure for
MACROD2-AS1
ECgene alternative splicing isoforms for
MACROD2-AS1

Expression for MACROD2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MACROD2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MACROD2-AS1 Gene

This gene is overexpressed in Testis (x50.3).

SOURCE GeneReport for Unigene cluster for MACROD2-AS1 Gene:

Hs.407533
genes like me logo Genes that share expression patterns with MACROD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MACROD2-AS1 Gene

Orthologs for MACROD2-AS1 Gene

Evolution for MACROD2-AS1 Gene

ENSEMBL:
Gene Tree for MACROD2-AS1 (if available)
TreeFam:
Gene Tree for MACROD2-AS1 (if available)

No data available for Orthologs for MACROD2-AS1 Gene

Paralogs for MACROD2-AS1 Gene

No data available for Paralogs for MACROD2-AS1 Gene

Variants for MACROD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for MACROD2-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000067628 -- 14,891,973(+) TTATG(A/T)AAAAC intron-variant
rs1000090141 -- 14,915,424(+) ATGTC(G/T)TCCAA intron-variant
rs1000176721 -- 14,928,395(+) AAACC(A/G)TCAAT intron-variant
rs1000263105 -- 14,885,390(+) AATTG(A/T)CCCTA intron-variant
rs1000318160 -- 14,921,506(+) AAAGC(A/C)TGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MACROD2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1228e212 CNV loss 25503493
dgv1231e212 CNV loss 25503493
dgv4251n100 CNV loss 25217958
dgv4255n100 CNV loss 25217958
dgv4257n100 CNV loss 25217958
dgv4261n100 CNV loss 25217958
dgv4264n100 CNV loss 25217958
dgv4267n100 CNV loss 25217958
dgv4268n100 CNV loss 25217958
dgv4270n100 CNV loss 25217958
dgv4272n100 CNV loss 25217958
dgv4273n100 CNV loss 25217958
dgv4274n100 CNV loss 25217958
dgv4275n100 CNV loss 25217958
dgv502n27 CNV loss 19166990
dgv506n27 CNV loss 19166990
dgv507n27 CNV loss 19166990
dgv7465n54 CNV loss 21841781
dgv7466n54 CNV loss 21841781
dgv7467n54 CNV loss 21841781
dgv7469n54 CNV loss 21841781
dgv7472n54 CNV loss 21841781
dgv7473n54 CNV loss 21841781
dgv7479n54 CNV loss 21841781
dgv7480n54 CNV loss 21841781
dgv7481n54 CNV loss 21841781
dgv7482n54 CNV loss 21841781
dgv7483n54 CNV loss 21841781
dgv7484n54 CNV loss 21841781
dgv7485n54 CNV loss 21841781
dgv7486n54 CNV loss 21841781
dgv7487n54 CNV loss 21841781
esv2422304 CNV deletion 17116639
esv2422391 CNV deletion 17116639
esv2665319 CNV deletion 23128226
esv2676941 CNV deletion 23128226
esv26952 CNV loss 19812545
esv2722213 CNV deletion 23290073
esv2722214 CNV deletion 23290073
esv2751906 CNV loss 17911159
esv2751908 CNV loss 17911159
esv2758785 CNV loss 17122850
esv2763663 CNV loss 21179565
esv29969 CNV gain 17803354
esv33655 CNV gain 17666407
esv34302 CNV loss 17911159
esv3556869 CNV deletion 23714750
esv3584464 CNV loss 25503493
esv3584465 CNV loss 25503493
esv3584466 CNV loss 25503493
esv3584467 CNV loss 25503493
esv3645325 CNV loss 21293372
esv3645326 CNV loss 21293372
esv3645345 CNV loss 21293372
esv3645346 CNV loss 21293372
esv3645348 CNV loss 21293372
esv3645349 CNV loss 21293372
esv3645350 CNV loss 21293372
esv3645351 CNV loss 21293372
esv3645352 CNV loss 21293372
esv3645353 CNV loss 21293372
esv3645354 CNV loss 21293372
esv3893296 CNV loss 25118596
esv3893297 CNV loss 25118596
esv3893299 CNV loss 25118596
esv3893305 CNV loss 25118596
esv3893309 CNV loss 25118596
esv3893313 CNV loss 25118596
esv3893314 CNV loss 25118596
nsv1055803 CNV loss 25217958
nsv1056797 CNV loss 25217958
nsv1058452 CNV loss 25217958
nsv1061573 CNV loss 25217958
nsv1062048 CNV loss 25217958
nsv1062907 CNV loss 25217958
nsv1063702 CNV loss 25217958
nsv1066764 CNV loss 25217958
nsv1067561 CNV loss 25217958
nsv1129214 CNV insertion 24896259
nsv185 CNV deletion 15895083
nsv3300 CNV deletion 18451855
nsv433323 CNV loss 18776910
nsv435740 CNV deletion 17901297
nsv458916 CNV loss 19166990
nsv458917 CNV loss 19166990
nsv470541 CNV loss 18288195
nsv498967 CNV loss 21111241
nsv517845 CNV loss 19592680
nsv520315 CNV loss 19592680
nsv520440 CNV loss 19592680
nsv522604 CNV loss 19592680
nsv585533 CNV loss 21841781
nsv585534 CNV loss 21841781
nsv585538 CNV loss 21841781
nsv585540 CNV loss 21841781
nsv585541 CNV loss 21841781
nsv585553 CNV loss 21841781

Relevant External Links for MACROD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MACROD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MACROD2-AS1 Gene

Disorders for MACROD2-AS1 Gene

Relevant External Links for MACROD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MACROD2-AS1

No disorders were found for MACROD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MACROD2-AS1 Gene

Publications for MACROD2-AS1 Gene

No publications were found for MACROD2-AS1 Gene.

Products for MACROD2-AS1 Gene

Sources for MACROD2-AS1 Gene

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