Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MACC1-AS1 Gene

Subcategory (RNA class) for MACC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MACC1-AS1 Gene

  • MACC1 Antisense RNA 1 2 3 5
  • MACC1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for MACC1-AS1 Gene

Summaries for MACC1-AS1 Gene

GeneCards Summary for MACC1-AS1 Gene

MACC1-AS1 (MACC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MACC1-AS1 Gene

Genomics for MACC1-AS1 Gene

Regulatory Elements for MACC1-AS1 Gene

Enhancers for MACC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F020111 1.5 FANTOM5 Ensembl ENCODE 19.6 -28.7 -28671 3.9 PKNOX1 ATF1 TAL1 JUN MAX EBF1 FOSL1 GATA3 NCOR1 CBX5 MACC1-AS1 ENSG00000243004 TWISTNB LOC105375181 LOC101927668
GH07F020116 0.6 ENCODE 19.5 -24.1 -24128 2.3 FOXP2 MACC1-AS1 ENSG00000243004 LOC100506098 LOC101927668 LOC105375181
GH07F020119 0.2 ENCODE 13.7 -18.5 -18525 8.2 BRD4 PAF1 CTCF TEAD4 CEBPB CEBPG REST RAD21 POLR2A SMC3 MACC1-AS1 TMEM196 LOC100506098 LOC101927668 LOC105375181
GH07F020083 1.2 FANTOM5 Ensembl 11.8 -57.9 -57916 0.4 SMARCC1 JUND STAT1 JUN CEBPB STAT3 FOS ENSG00000243004 MACC1-AS1 TWISTNB ITGB8 LOC105375181 GC07P020018
GH07F020152 1 FANTOM5 Ensembl 10.7 +10.4 10409 0.6 CUX1 FOS MACC1-AS1 TWISTNB LOC100506098
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MACC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MACC1-AS1 Gene

Chromosome:
7
Start:
20,141,916 bp from pter
End:
20,153,531 bp from pter
Size:
11,616 bases
Orientation:
Plus strand

Genomic View for MACC1-AS1 Gene

Genes around MACC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MACC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MACC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MACC1-AS1 Gene

Proteins for MACC1-AS1 Gene

Post-translational modifications for MACC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MACC1-AS1 Gene

Domains & Families for MACC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MACC1-AS1 Gene

Function for MACC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MACC1-AS1 Gene

Localization for MACC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MACC1-AS1 Gene

Pathways & Interactions for MACC1-AS1 Gene

SuperPathways for MACC1-AS1 Gene

No Data Available

Interacting Proteins for MACC1-AS1 Gene

Gene Ontology (GO) - Biological Process for MACC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MACC1-AS1 Gene

Transcripts for MACC1-AS1 Gene

mRNA/cDNA for MACC1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MACC1-AS1 Gene

MACC1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MACC1-AS1 Gene

No ASD Table

Relevant External Links for MACC1-AS1 Gene

GeneLoc Exon Structure for
MACC1-AS1
ECgene alternative splicing isoforms for
MACC1-AS1

Expression for MACC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MACC1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MACC1-AS1 Gene

This gene is overexpressed in Testis (x11.1), Nerve - Tibial (x6.9), and Cervix - Endocervix (x4.0).

SOURCE GeneReport for Unigene cluster for MACC1-AS1 Gene:

Hs.145104
genes like me logo Genes that share expression patterns with MACC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MACC1-AS1 Gene

Orthologs for MACC1-AS1 Gene

Evolution for MACC1-AS1 Gene

ENSEMBL:
Gene Tree for MACC1-AS1 (if available)
TreeFam:
Gene Tree for MACC1-AS1 (if available)

No data available for Orthologs for MACC1-AS1 Gene

Paralogs for MACC1-AS1 Gene

No data available for Paralogs for MACC1-AS1 Gene

Variants for MACC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MACC1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10231585 -- 20,142,397(+) CCTCA(G/T)CTCTC intron-variant, upstream-variant-2KB
rs10236093 -- 20,145,573(+) CTATG(A/G)TGGCA intron-variant
rs10265489 -- 20,145,345(+) CATAC(C/G)ACAGG intron-variant
rs10273492 -- 20,147,177(+) CAAAA(A/C)ATACA intron-variant
rs10275320 -- 20,142,431(+) GTAGA(A/G)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MACC1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2734100 CNV deletion 23290073
esv3571690 CNV loss 25503493
nsv1015245 CNV loss 25217958
nsv1019427 CNV loss 25217958
nsv830919 CNV loss 17160897

Relevant External Links for MACC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MACC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MACC1-AS1 Gene

Disorders for MACC1-AS1 Gene

Relevant External Links for MACC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MACC1-AS1

No disorders were found for MACC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MACC1-AS1 Gene

Publications for MACC1-AS1 Gene

No publications were found for MACC1-AS1 Gene.

Products for MACC1-AS1 Gene

Sources for MACC1-AS1 Gene

Content
Loading form....