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EPCAM Gene

protein-coding   GIFtS: 56

GC02P047425
epithelial cell adhesion molecule
(Previous names: antigen identified by monoclonal antibody AUA1, tumor-associated calcium signal transducer 1 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: M4S1, MIC18, TACSTD1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
17-1A 1
323/A3 1
CD326 1
CO-17A 1, 2
CO17-1A 2
EGP 2, 3
EGP-2 1, 2
EGP34 1, 2
EGP40 1, 2
ESA 1, 2
Ep-CAM 1, 2
GA733-2 1, 2, 3
HEA125 1
KS1/4 1, 2
KSA 1, 2, 3
Ly74 1
M1S2 3
M4S1 2, 3
MH99 1
MIC18 2, 3
MK-1 1, 2
MOC31 1
TACST-1 1, 2
TACSTD1 2
TROP1 1, 2, 3
hEGP-2 2
Descriptions
Adenocarcinoma-associated antigen 2, 3
CD326 antigen 3
Cell surface glycoprotein Trop-1 3
Epithelial cell surface antigen 3
Epithelial glycoprotein 3
KS 1/4 antigen 3
Major gastrointestinal tumor-associated protein GA733-2 3
antigen identified by monoclonal antibody AUA1 1
carcinoma-associated antigen GA733-2 2
epithelial cell adhesion molecule 2
human epithelial glycoprotein-2 2
membrane component, chromosome 4, surface marker (35kD
glycoprotein) 2
tumor-associated calcium signal transducer 1 1, 2
External Ids
HGNC: 115291
Entrez Gene: 40722
UniProtKB: P164223
Ensembl: ENSG000001198887
Search outside databases for aliases for EPCAM gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for EPCAM:
This gene encodes a carcinoma-associated antigen and is a member of a family that includes at least
two type I membrane proteins. This antigen is expressed on most normal epithelial cells and
gastrointestinal carcinomas and functions as a homotypic calcium-independent cell adhesion
molecule. The antigen is being used as a target for immunotherapy treatment of human carcinomas.
Mutations in this gene result in congenital tufting enteropathy. [provided by RefSeq]

UniProtKB/Swiss-Prot: TACD1_HUMAN, P16422
Function: GA733 tumor-associated antigen gene family may function as growth factor receptors

Gene Wiki entry for EPCAM (Tumor-associated_calcium_signal_transducer_1)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p21   Ensembl cytogenetic band:  2p21   HGNC cytogenetic band: 2p21

EPCAM Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P047425:     (about GC identifiers)

Start:
47,425,801 bp from pter
End:
47,467,661 bp from pter
Size:
41,861 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000002.10  NT_022184.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: TACD1_HUMAN, P16422 (See protein sequence)
Recommended Name: Tumor-associated calcium signal transducer 1 precursor  
Size: 314 amino acids; 34932 Da
Subunit: Monomer
Subcellular location: Membrane; Single-pass type I membrane protein
Secondary accessions: P18180 Q6FG26 Q6FG49 Q96C47 Q9UCD0

REFSEQ proteins: NP_002345.2  

ENSEMBL proteins: 
ENSP00000263735 ENSP00000385476 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
R&D Systems Recombinant & Natural Proteins for EPCAM (EpCAM/TROP-1)
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (EpCAM)
Human Recombinant Proteins from Abnova (TACSTD1)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005886 plasma membrane TAS1729376
GO:0016021 integral to membrane IEA--
About this table

Antibodies for EPCAM: 
Invitrogen Antibodies for EPCAM
Millipore Mono- and Polyclonal Antibodies for the study of EPCAM
Sigma-Aldrich Antibodies for EPCAM
R&D Systems Antibodies for EPCAM (EpCAM/TROP-1)
Cell Signaling Technology (CST) Antibodies for EPCAM 
Antibodies from Abcam (EpCAM), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (TACSTD1)
Novus Biologicals Antibodies for EPCAM

Assays for EPCAM: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
R&D Systems ELISAs for EPCAM (EpCAM/TROP-1)         (see all)
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

1 InterPro domain/family:
 IPR000716 Thyroglobulin_1


   GeneDecks  EPCAM for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry P16422

ProtoNet protein and cluster: P16422

1 Blocks protein family: IPB000716 Thyroglobulin type-1

UniProtKB/Swiss-Prot: TACD1_HUMAN, P16422
Similarity: Contains 1 thyroglobulin type-1 domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (EPCAM)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002354

              Applied Biosystems Silencer® siRNAs for EPCAM

              Sigma-Aldrich siRNA and siRNA Panels for EPCAM  
                     Sigma-Aldrich shRNA for EPCAM  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for EPCAM
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002354
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002354
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_002354 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_002354

UniProtKB/Swiss-Prot: TACD1_HUMAN, P16422
Function: GA733 tumor-associated antigen gene family may function as growth factor receptors

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


 Gene Network CentralTM Interacting Genes and Proteins Network for  EPCAM 


5/12 Interacting proteins for EPCAM (ENSP000002637353) via UniProtKB, MINT, and/or STRING (see all 12 )
InteractantInteraction Details
GeneCardExternal ID(s)
TP53ENSP000002693053STRING (score=.85)
TCF7L2ENSP000003448233STRING (score=.847)
CD79AENSP000002219723STRING (score=.842)
HLA-CENSP000003654023STRING (score=.814)
CDH1ENSP000002687943STRING (score=.744)
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for EPCAM
4 Novoseek chemical compound relationships for EPCAM gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
adecatumumab 86.71 2 16937114 (1), 16102830 (1)
exotoxin-a 32.44 1 11093823 (1)
p003 0.00 1 17361206 (1)
thymidine 0.00 1 16034560 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (EPCAM)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002354

              Sigma-Aldrich siRNA and siRNA Panels for EPCAM  
                     Sigma-Aldrich shRNA for EPCAM  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_002354  

REFSEQ mRNAs for EPCAM gene: 

NM_002354.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_002354  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002354
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002354
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_002354 

Additional cDNA sequence: 

AK026585.1 BC014785.1 CR542259.1 CR542283.1 CR593061.1 CR626162.1 M26481.1 M32306.1 
M32325.1 M33011.1 X14758.1 

13 DOTS entries:

DT.87014014  DT.218154  DT.100824777  DT.100824778  DT.95197888  DT.100824775  DT.91770051  DT.95306990 
DT.91866556  DT.100807173  DT.87016265  DT.120994666  DT.40235087 

24/435 AceView cDNA sequences (see all 435 ):

AA847578 CR593061 W32964 BQ778631 W39707 BM854437 AI951481 AI721217 
CR542283 BE843159 CA942830 AL047838 BM751257 BQ778413 AI978632 AW167961 
BM818348 AW168044 BM843988 BC014785 CB159310 CD108409 AA424668 AI264210 

Unigene Cluster for EPCAM:

Epithelial cell adhesion molecule
Hs.542050  [show with all ESTs]
Unigene Representative Sequence: NM_002354


GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for EPCAM

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1:                    -           -                                                         
SP2:                                                                                          
SP3:        -     -     -           -                                                         
SP4:                                -                                                         

About this scheme

ECgene alternative splicing isoforms for EPCAM

2 Ensembl transcripts including schematic representations:
ENST00000263735  ENST00000405271  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

EPCAM expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for EPCAM

1 / 2

3 probe-sets matching EPCAM gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
575_s_at2 U95-A 1 1.00 1.00 1.00 1.00 -- -- -- -- --

201839_s_at2 U133-A 1 1.00 1.00 -- -- -- -- -- -- --

201839_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  EPCAM for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: AGTTTGTTAG

SOURCE GeneReport for Unigene cluster: Hs.542050

UniProtKB/Swiss-Prot: TACD1_HUMAN, P16422
Tissue specificity: This protein is expressed in almost all epithelial cell membranes but not on
mesodermal or neural cell membranes. Found on the surface of adenocarcinomas

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for EPCAM gene from 5/9 species (see all 9 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
EPCAM1   -- epithelial cell adhesion molecule 87.5(n)
82.64(a)
481360  XM_538481.2  XP_538481.2 
chimpanzee
(Pan troglodytes)
EPCAM1   -- epithelial cell adhesion molecule 98.97(n)
97.59(a)
459214  XM_515458.2  XP_515458.2 
cow
(Bos taurus)
EPCAM1   -- epithelial cell adhesion molecule 86.94(n)
82.8(a)
514039  NM_001035290.1  NP_001030367.1 
rat
(Rattus norvegicus)
Tacstd11   -- tumor-associated calcium signal transducer 1 79.41(n)
82.17(a)
171577  NM_138541.1  NP_612550.1 
mouse
(Mus musculus)
Epcam1, 5 175
epithelial cell adhesion molecule1, 5 79.62(n)1
81.85(a)1
170751  NM_008532.21  NP_032558.21 
 AJ4894525  AJ4894535  (see all 15)
About this table        Species with no ortholog for EPCAM

ENSEMBL Gene Tree for EPCAM
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for EPCAM gene
TACSTD22  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/124 NCBI SNPs in EPCAM are shown (see all 124 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 30)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 2 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs11264971,2
A,C,F,H,O47454610(+) CTCCAC/TGTGCT 1 T/M mis118Minor allele frequency- T:0.28MN EU EA WA NA 1880
--
rs14211,2
A,C,F,H,O47467374(-) CAAATA/GTATGA 1 -- ut3110Minor allele frequency- G:0.12MN NA EU EA WA 1116
rs38143591,2
C,F,H47449628(-) TGAAGC/ACTTGA 1 -- ng516Minor allele frequency- A:0.01MN EA EU WA 774
rs115542921,2
F,H47467521(-) AATGTT/AACACA 1 -- ut31 ese34Minor allele frequency- A:0.01EU EA WA 418
rs32036451,2
H47467471(+) CAGATC/TTAATG 1 -- ut315Minor allele frequency- T:0.00MN EU EA WA 602
rs130333841,2
C47449606(+) CCTTCC/TCCCCA 1 -- ng51 trp30--------
rs11269131,2
H47467553(+) CTTCCA/CCAGTA 1 -- ut31 ese34Minor allele frequency- C:0.00MN EU EA 476
rs75842561,2
A,C,F,H47465728(+) ATGTCC/TATTAA 1 -- int111Minor allele frequency- T:0.42EU EA WA NA 980
rs39235591,2
A,C,F,H47460278(-) CTAATC/TTATTG 1 -- int18Minor allele frequency- T:0.25EU EA WA 838
rs39249171,2
A,C,F,H47466382(+) TGTGTA/GTCTTT 1 -- int112Minor allele frequency- G:0.36EU EA WA NA 1050
About this table

HapMap Linkage Disequilibrium images for EPCAM (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 185535

10/51 Novoseek disease relationships for EPCAM gene (see all 51 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
carcinoma 67.19 90 17586680 (5), 17683191 (4), 17600130 (3), 18508581 (2) (see all 55)
colorectal carcinoma 59.86 14 17361206 (3), 15570423 (2), 12673686 (1), 7539133 (1) (see all 9)
malignant ascites 59.44 3 19443405 (1), 17410361 (1), 17900673 (1)
tumors 59.31 139 17361206 (5), 11948467 (4), 15557427 (4), 17213811 (4) (see all 72)
cancer 52.02 70 16775119 (6), 17211480 (3), 17213811 (3), 17069841 (2) (see all 36)
gastrointestinal carcinoma 51.27 6 11080501 (1), 16034560 (1), 10811480 (1)
colon carcinoma 45.98 5 16971804 (1), 16404366 (1), 15637741 (1)
ovarian cancer 43.54 15 14581349 (5), 9873999 (1), 16678891 (1), 9139849 (1) (see all 9)
metastasis 42.96 22 9109790 (3), 11439361 (3), 9873999 (2), 18383834 (2) (see all 12)
adenocarcinoma 42.91 26 19443410 (6), 15569986 (2), 15637741 (2), 15955212 (2) (see all 16)
About this table

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/261 PubMed articles for EPCAM gene (see all 261 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 4072 HGNC: 11529 AceView: TACSTD1 Ensembl:ENSG00000119888 euGenes: HUgn4072
ECgene: EPCAM H-InvDB: EPCAM
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for EPCAM Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for EPCAM:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for EPCAM-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for EPCAM Antibodies for EPCAM
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for EPCAM Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant & Natural Proteins  

 Recombinant Proteins (TACSTD1)
 Antibodies (TACSTD1)
 Search for Chimera RNAi
 Custom Service for Mouse Mab
 Custom Service for Rabbit Pab from Full-length Protein
  
 Antibodies & Assays for EPCAM 

 Recombinant Proteins
(EpCAM)
 Antibodies (EpCAM)
 Search OriGene for EPCAM
 Search Tocris compounds for EPCAM




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for EPCAM

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