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Aliases for LYSMD1 Gene

Aliases for LYSMD1 Gene

  • LysM, Putative Peptidoglycan-Binding, Domain Containing 1 2 3
  • LysM And Putative Peptidoglycan-Binding Domain-Containing Protein 1 3
  • RP11-68I18.5 3
  • SB145 3

External Ids for LYSMD1 Gene

Summaries for LYSMD1 Gene

GeneCards Summary for LYSMD1 Gene

LYSMD1 (LysM, Putative Peptidoglycan-Binding, Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is LYSMD2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LYSMD1 Gene

Genomics for LYSMD1 Gene

Genomic Location for LYSMD1 Gene

Start:
151,159,748 bp from pter
End:
151,165,948 bp from pter
Size:
6,201 bases
Orientation:
Minus strand

Genomic View for LYSMD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LYSMD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LYSMD1 Gene

Regulatory Elements for LYSMD1 Gene

Proteins for LYSMD1 Gene

  • Protein details for LYSMD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96S90-LYSM1_HUMAN
    Recommended name:
    LysM and putative peptidoglycan-binding domain-containing protein 1
    Protein Accession:
    Q96S90
    Secondary Accessions:
    • B4DQA1
    • Q69YX9

    Protein attributes for LYSMD1 Gene

    Size:
    227 amino acids
    Molecular mass:
    25003 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAH10716.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for LYSMD1 Gene

    Alternative splice isoforms for LYSMD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LYSMD1 Gene

Proteomics data for LYSMD1 Gene at MOPED

Post-translational modifications for LYSMD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LYSMD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LYSMD1 Gene

Domains for LYSMD1 Gene

Protein Domains for LYSMD1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for LYSMD1 Gene

Graphical View of Domain Structure for InterPro Entry

Q96S90

UniProtKB/Swiss-Prot:

LYSM1_HUMAN
Similarity:
  • Contains 1 LysM repeat.:
    • Q96S90
genes like me logo Genes that share domains with LYSMD1: view

No data available for Gene Families for LYSMD1 Gene

Function for LYSMD1 Gene

Gene Ontology (GO) - Molecular Function for LYSMD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LYSMD1: view

miRNA for LYSMD1 Gene

miRTarBase miRNAs that target LYSMD1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for LYSMD1 Gene

Localization for LYSMD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LYSMD1 Gene COMPARTMENTS Subcellular localization image for LYSMD1 gene
Compartment Confidence
nucleus 3
cytosol 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LYSMD1 Gene

Pathways for LYSMD1 Gene

SuperPathways for LYSMD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LYSMD1 Gene

None

No data available for Pathways by source for LYSMD1 Gene

Transcripts for LYSMD1 Gene

mRNA/cDNA for LYSMD1 Gene

Unigene Clusters for LYSMD1 Gene

LysM, putative peptidoglycan-binding, domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LYSMD1 Gene

No ASD Table

Relevant External Links for LYSMD1 Gene

GeneLoc Exon Structure for
LYSMD1
ECgene alternative splicing isoforms for
LYSMD1

Expression for LYSMD1 Gene

mRNA expression in normal human tissues for LYSMD1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for LYSMD1 Gene

SOURCE GeneReport for Unigene cluster for LYSMD1 Gene Hs.591482

genes like me logo Genes that share expressions with LYSMD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LYSMD1 Gene

Orthologs for LYSMD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for LYSMD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LYSMD1 35
  • 99.56 (n)
  • 99.12 (a)
LYSMD1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LYSMD1 35
  • 90.67 (n)
  • 88.44 (a)
LYSMD1 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LYSMD1 35
  • 89.72 (n)
  • 88.99 (a)
LYSMD1 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm9726 36
  • 84 (a)
OneToMany
Lysmd1 35
  • 85.4 (n)
  • 84.51 (a)
Lysmd1 16
Lysmd1 36
  • 84 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia LYSMD1 36
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lysmd1 35
  • 85.84 (n)
  • 83.19 (a)
lizard
(Anolis carolinensis)
Reptilia LYSMD1 36
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia lysmd1 35
  • 57.44 (n)
  • 56.41 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.14388 35
lysmd1 35
  • 54.97 (n)
  • 50.48 (a)
lysmd1 36
  • 49 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG12207 36
  • 14 (a)
OneToMany
Species with no ortholog for LYSMD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LYSMD1 Gene

ENSEMBL:
Gene Tree for LYSMD1 (if available)
TreeFam:
Gene Tree for LYSMD1 (if available)

Paralogs for LYSMD1 Gene

Paralogs for LYSMD1 Gene

Selected SIMAP similar genes for LYSMD1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LYSMD1: view

Variants for LYSMD1 Gene

Structural Variations from Database of Genomic Variants (DGV) for LYSMD1 Gene

Variant ID Type Subtype PubMed ID
nsv522840 CNV Gain 19592680
dgv2n68 CNV Loss 17160897

Relevant External Links for LYSMD1 Gene

HapMap Linkage Disequilibrium report
LYSMD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for LYSMD1 Gene

Disorders for LYSMD1 Gene

No disorders were found for LYSMD1 Gene.

No data available for UniProtKB/Swiss-Prot for LYSMD1 Gene

Publications for LYSMD1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for LYSMD1 Gene

Sources for LYSMD1 Gene

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