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Aliases for LYRM4 Gene

Aliases for LYRM4 Gene

  • LYR Motif Containing 4 2 3
  • C6orf149 3 4 6
  • ISD11 3 4 6
  • COXPD19 3 6
  • Mitochondrial Matrix Nfs1 Interacting Protein 3
  • Chromosome 6 Open Reading Frame 149 2
  • LYR Motif-Containing Protein 4 3
  • Homolog Of Yeast Isd11 3
  • CGI-203 3

External Ids for LYRM4 Gene

Previous HGNC Symbols for LYRM4 Gene

  • C6orf149

Previous GeneCards Identifiers for LYRM4 Gene

  • GC06M005049
  • GC06M005103
  • GC06M004983

Summaries for LYRM4 Gene

GeneCards Summary for LYRM4 Gene

LYRM4 (LYR Motif Containing 4) is a Protein Coding gene. Diseases associated with LYRM4 include combined oxidative phosphorylation deficiency 19 and severe neonatal lactic acidosis due to nfs1-isd11 complex deficiency. Among its related pathways are Metabolism and Mitochondrial Iron-Sulfur Cluster Biogenesis.

UniProtKB/Swiss-Prot for LYRM4 Gene

  • Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LYRM4 Gene

Genomics for LYRM4 Gene

Regulatory Elements for LYRM4 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for LYRM4 Gene

5,031,753 bp from pter
5,260,950 bp from pter
229,198 bases
Minus strand

Genomic View for LYRM4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LYRM4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LYRM4 Gene

Proteins for LYRM4 Gene

  • Protein details for LYRM4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    LYR motif-containing protein 4
    Protein Accession:
    Secondary Accessions:
    • A8K543
    • Q5XKP1

    Protein attributes for LYRM4 Gene

    91 amino acids
    Molecular mass:
    10758 Da
    Quaternary structure:
    • Interacts with FXN. Interaction is increased by nickel. Interaction is inhibited by calcium, magnesium, manganese, copper, cobalt, zinc, and iron. Forms a complex with the cytosolic/nuclear form of NFS1. The complex increased the stability of NFS1.
    • Reduction of LYRM4 levels by siRNA increases the total iron content, and reduces cytosolic and mitochondrial aconitase activities and NFS1 protein levels

neXtProt entry for LYRM4 Gene

Proteomics data for LYRM4 Gene at MOPED

Post-translational modifications for LYRM4 Gene

  • Ubiquitination at Lys58
  • Modification sites at PhosphoSitePlus

Other Protein References for LYRM4 Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for LYRM4

No data available for DME Specific Peptides for LYRM4 Gene

Domains for LYRM4 Gene

Gene Families for LYRM4 Gene

  • LYRM :LYR motif containing

Protein Domains for LYRM4 Gene


Suggested Antigen Peptide Sequences for LYRM4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Q9HD34
  • Belongs to the complex I LYR family.
genes like me logo Genes that share domains with LYRM4: view

Function for LYRM4 Gene

Molecular function for LYRM4 Gene

UniProtKB/Swiss-Prot Function:
Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Phenotypes for LYRM4 Gene

GenomeRNAi human phenotypes for LYRM4:
genes like me logo Genes that share phenotypes with LYRM4: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for LYRM4

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LYRM4 Gene

Localization for LYRM4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LYRM4 Gene

Mitochondrion. Nucleus.

Subcellular locations from

Jensen Localization Image for LYRM4 Gene COMPARTMENTS Subcellular localization image for LYRM4 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytosol 1

Gene Ontology (GO) - Cellular Components for LYRM4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005739 mitochondrion --
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with LYRM4: view

Pathways for LYRM4 Gene

genes like me logo Genes that share pathways with LYRM4: view

Pathways by source for LYRM4 Gene

2 Reactome pathways for LYRM4 Gene

UniProtKB/Swiss-Prot Q9HD34-LYRM4_HUMAN

  • Pathway: Cofactor biosynthesis; iron-sulfur cluster biosynthesis

Interacting Proteins for LYRM4 Gene

Gene Ontology (GO) - Biological Process for LYRM4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044281 small molecule metabolic process TAS --
genes like me logo Genes that share ontologies with LYRM4: view

Transcripts for LYRM4 Gene

Unigene Clusters for LYRM4 Gene

LYR motif containing 4:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for LYRM4

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LYRM4 Gene

No ASD Table

Relevant External Links for LYRM4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LYRM4 Gene

mRNA expression in normal human tissues for LYRM4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for LYRM4 Gene

This gene is overexpressed in Frontal cortex (12.1), Adrenal (9.3), and Gallbladder (6.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for LYRM4 Gene

SOURCE GeneReport for Unigene cluster for LYRM4 Gene Hs.387755

mRNA Expression by UniProt/SwissProt for LYRM4 Gene

Tissue specificity: Reduced mRNA levels in Friedreich ataxia patients.
genes like me logo Genes that share expressions with LYRM4: view

Expression partners for LYRM4 Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for LYRM4 Gene

Orthologs for LYRM4 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for LYRM4 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia LYRM4 35
  • 84.62 (n)
  • 87.91 (a)
LYRM4 36
  • 76 (a)
(Canis familiaris)
Mammalia LYRM4 35
  • 85.99 (n)
  • 82.61 (a)
LYRM4 36
  • 83 (a)
(Mus musculus)
Mammalia Lyrm4 35
  • 89.38 (n)
  • 89.01 (a)
Lyrm4 16
Lyrm4 36
  • 75 (a)
(Pan troglodytes)
Mammalia LYRM4 35
  • 99.27 (n)
  • 98.9 (a)
LYRM4 36
  • 97 (a)
(Rattus norvegicus)
Mammalia LOC102550385 35
  • 87.91 (n)
  • 87.91 (a)
(Gallus gallus)
Aves LYRM4 35
  • 75.29 (n)
  • 72.94 (a)
LYRM4 36
  • 62 (a)
(Anolis carolinensis)
Reptilia LYRM4 36
  • 65 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia lyrm4 35
  • 69.35 (n)
  • 68.97 (a)
(Danio rerio)
Actinopterygii lyrm4 35
  • 60.32 (n)
  • 54.76 (a)
lyrm4 36
  • 46 (a)
fruit fly
(Drosophila melanogaster)
Insecta bcn92 36
  • 36 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ISD11 36
  • 33 (a)
Species with no ortholog for LYRM4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LYRM4 Gene

Gene Tree for LYRM4 (if available)
Gene Tree for LYRM4 (if available)

Paralogs for LYRM4 Gene Pseudogenes for LYRM4 Gene

genes like me logo Genes that share paralogs with LYRM4: view

No data available for Paralogs for LYRM4 Gene

Variants for LYRM4 Gene

Sequence variations from dbSNP and Humsavar for LYRM4 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs8980 -- 5,108,500(+) AAACA(C/G)TGGGA utr-variant-3-prime, nc-transcript-variant, intron-variant
rs9606 -- 5,109,358(+) CCCCA(G/T)CTCAA utr-variant-3-prime, nc-transcript-variant, intron-variant
rs22662 -- 5,183,302(+) ATCCT(C/T)CATCT intron-variant
rs52401 -- 5,145,913(-) GAGAG(A/T)GCCAA intron-variant
rs85204 -- 5,133,198(+) AGAAA(C/T)AGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LYRM4 Gene

Variant ID Type Subtype PubMed ID
nsv462622 CNV Gain 19166990
esv28267 CNV Gain 19812545
esv2660224 CNV Deletion 23128226
nsv5179 CNV Loss 18451855
esv2469123 CNV Deletion 19546169
esv1953097 CNV Deletion 18987734
esv2665378 CNV Deletion 23128226
esv29679 CNV Loss 19812545
esv2731512 CNV Deletion 23290073
esv1673345 CNV Deletion 17803354
esv259633 OTHER Complex 20981092
esv260071 OTHER Complex 20981092
esv2731513 CNV Deletion 23290073
esv2666766 CNV Deletion 23128226
nsv522457 CNV Loss 19592680

Relevant External Links for LYRM4 Gene

HapMap Linkage Disequilibrium report
Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LYRM4 Gene

Disorders for LYRM4 Gene

(1) OMIM Diseases for LYRM4 Gene (613311)


  • Combined oxidative phosphorylation deficiency 19 (COXPD19) [MIM:615595]: A mitochondrial disorder characterized by respiratory distress, hypotonia, and severe lactic acidosis in the newborn period. Other features include gastroesophageal reflux and elevated liver enzymes with normal synthetic function. {ECO:0000269 PubMed:23814038}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for LYRM4

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
genes like me logo Genes that share disorders with LYRM4: view

No data available for University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for LYRM4 Gene

Publications for LYRM4 Gene

  1. Mitochondrial frataxin interacts with ISD11 of the NFS1/ISCU complex and multiple mitochondrial chaperones. (PMID: 17331979) Shan Y. … Cortopassi G. (Hum. Mol. Genet. 2007) 3 4 23
  2. Identification of the human crooked neck gene by comparative gene identification. (PMID: 11342225) Lai C.-H. … Lin W.-C. (Biochim. Biophys. Acta 2001) 3 4
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for LYRM4 Gene

  • Addgene plasmids for LYRM4

Sources for LYRM4 Gene

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