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Aliases for LYPD1 Gene

Aliases for LYPD1 Gene

  • LY6/PLAUR Domain Containing 1 2 3 5
  • Putative HeLa Tumor Suppressor 3 4
  • LYPDC1 3 4
  • PHTS 3 4

External Ids for LYPD1 Gene

Previous HGNC Symbols for LYPD1 Gene

  • LYPDC1

Previous GeneCards Identifiers for LYPD1 Gene

  • GC02M133238
  • GC02M133118
  • GC02M133402
  • GC02M125395

Summaries for LYPD1 Gene

GeneCards Summary for LYPD1 Gene

LYPD1 (LY6/PLAUR Domain Containing 1) is a Protein Coding gene. Diseases associated with LYPD1 include Cowden Disease and Renal Cell Carcinoma, Papillary.

Gene Wiki entry for LYPD1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LYPD1 Gene

Genomics for LYPD1 Gene

Regulatory Elements for LYPD1 Gene

Enhancers for LYPD1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LYPD1 on UCSC Golden Path with GeneCards custom track

Promoters for LYPD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LYPD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for LYPD1 Gene

132,644,764 bp from pter
132,671,579 bp from pter
26,816 bases
Minus strand

Genomic View for LYPD1 Gene

Genes around LYPD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LYPD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LYPD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LYPD1 Gene

Proteins for LYPD1 Gene

  • Protein details for LYPD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Ly6/PLAUR domain-containing protein 1
    Protein Accession:
    Secondary Accessions:
    • H7BXW6
    • Q6ZP52
    • Q6ZWI4
    • Q96AC2

    Protein attributes for LYPD1 Gene

    141 amino acids
    Molecular mass:
    15240 Da
    Quaternary structure:
    No Data Available
    • Sequence=BAC11647.1; Type=Frameshift; Positions=136; Evidence={ECO:0000305};

    Alternative splice isoforms for LYPD1 Gene


neXtProt entry for LYPD1 Gene

Proteomics data for LYPD1 Gene at MOPED

Post-translational modifications for LYPD1 Gene

Other Protein References for LYPD1 Gene

No data available for DME Specific Peptides for LYPD1 Gene

Domains & Families for LYPD1 Gene

Gene Families for LYPD1 Gene

Protein Domains for LYPD1 Gene


Suggested Antigen Peptide Sequences for LYPD1 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 UPAR/Ly6 domain.
  • Contains 1 UPAR/Ly6 domain.
genes like me logo Genes that share domains with LYPD1: view

Function for LYPD1 Gene

genes like me logo Genes that share phenotypes with LYPD1: view

Animal Models for LYPD1 Gene

MGI Knock Outs for LYPD1:

Animal Model Products

  • Taconic Biosciences Mouse Models for LYPD1

miRNA for LYPD1 Gene

miRTarBase miRNAs that target LYPD1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for LYPD1 Gene

Localization for LYPD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LYPD1 Gene

Cell membrane; Lipid-anchor, GPI-anchor.

Subcellular locations from

Jensen Localization Image for LYPD1 Gene COMPARTMENTS Subcellular localization image for LYPD1 gene
Compartment Confidence
plasma membrane 4
extracellular 3
nucleus 2

Gene Ontology (GO) - Cellular Components for LYPD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IBA --
genes like me logo Genes that share ontologies with LYPD1: view

Pathways & Interactions for LYPD1 Gene

SuperPathways for LYPD1 Gene

No Data Available

Interacting Proteins for LYPD1 Gene

Gene Ontology (GO) - Biological Process for LYPD1 Gene


No data available for Pathways by source and SIGNOR curated interactions for LYPD1 Gene

Drugs & Compounds for LYPD1 Gene

No Compound Related Data Available

Transcripts for LYPD1 Gene

Unigene Clusters for LYPD1 Gene

LY6/PLAUR domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LYPD1 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d ^ 6a · 6b · 6c · 6d
SP1: - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - - - - - -
SP4: - - - - -
SP5: - - - - - - - -
SP6: - -
SP7: -
SP9: - - - -
SP10: - - - - - - -
SP11: - - -

Relevant External Links for LYPD1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LYPD1 Gene

mRNA expression in normal human tissues for LYPD1 Gene

mRNA differential expression in normal tissues according to GTEx for LYPD1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x7.2), Brain - Caudate (basal ganglia) (x5.3), Brain - Putamen (basal ganglia) (x4.4), Brain - Hypothalamus (x4.4), Pituitary (x4.2), and Brain - Hippocampus (x4.1).

Protein differential expression in normal tissues from HIPED for LYPD1 Gene

This gene is overexpressed in Fetal Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for LYPD1 Gene

SOURCE GeneReport for Unigene cluster for LYPD1 Gene Hs.432395

genes like me logo Genes that share expression patterns with LYPD1: view

Protein tissue co-expression partners for LYPD1 Gene

- Elite partner

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for LYPD1 Gene

Orthologs for LYPD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LYPD1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia LYPD1 35
  • 91.02 (n)
  • 92.91 (a)
LYPD1 36
  • 93 (a)
(Canis familiaris)
Mammalia LYPD1 35
  • 89.83 (n)
  • 92.2 (a)
LYPD1 36
  • 92 (a)
(Mus musculus)
Mammalia Lypd1 35
  • 89.6 (n)
  • 93.62 (a)
Lypd1 16
Lypd1 36
  • 92 (a)
(Pan troglodytes)
Mammalia LYPD1 35
  • 99.76 (n)
  • 99.29 (a)
LYPD1 36
  • 85 (a)
(Rattus norvegicus)
Mammalia Lypd1 35
  • 87.94 (n)
  • 92.91 (a)
(Monodelphis domestica)
Mammalia LYPD1 36
  • 86 (a)
(Gallus gallus)
Aves LYPD1 35
  • 76.36 (n)
  • 80.14 (a)
LYPD1 36
  • 77 (a)
(Anolis carolinensis)
Reptilia LYPD1 36
  • 77 (a)
Species with no ortholog for LYPD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LYPD1 Gene

Gene Tree for LYPD1 (if available)
Gene Tree for LYPD1 (if available)

Paralogs for LYPD1 Gene

(1) SIMAP similar genes for LYPD1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with LYPD1: view

No data available for Paralogs for LYPD1 Gene

Variants for LYPD1 Gene

Sequence variations from dbSNP and Humsavar for LYPD1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs721470 -- 132,669,198(-) AGGGT(G/T)CGCGC intron-variant
rs3043653 -- 132,654,415(-) ACCAA(-/TT)TTTTT intron-variant
rs4954350 -- 132,651,272(+) AAGGT(C/T)CTTCC intron-variant
rs4954351 -- 132,652,035(+) CTGAA(A/C)CCTCA intron-variant
rs4954352 -- 132,652,097(+) ACCAA(C/G)AACAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LYPD1 Gene

Variant ID Type Subtype PubMed ID
esv4378 CNV Complex 18987735
nsv875137 CNV Gain 21882294
nsv875138 CNV Gain 21882294

Variation tolerance for LYPD1 Gene

Residual Variation Intolerance Score: 51.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.64; 13.61% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for LYPD1 Gene

Disorders for LYPD1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LYPD1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
cowden disease
  • dysplastic gangliocytoma of cerebellum
renal cell carcinoma, papillary
  • renal cell carcinoma
- elite association - COSMIC cancer census association via MalaCards
Search LYPD1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for LYPD1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with LYPD1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LYPD1 Gene

Publications for LYPD1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy K.W. … Pang C.P. (Physiol. Genomics 2006) 3
  5. PHTS, a novel putative tumor suppressor, is involved in the transformation reversion of HeLaHF cells independently of the p53 pathway. (PMID: 16413018) Yu D.H. … Li Q.X. (Exp. Cell Res. 2006) 3

Products for LYPD1 Gene

Sources for LYPD1 Gene