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Aliases & Descriptions for LYN
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 2.7.10.2 3 FLJ26625 2 JTK8 1 , 2
Descriptions Yamaguchi sarcoma viral (v-yes-1) oncogene homolog 2 Yamaguchi sarcoma viral (v-yes-1) related oncogene homolog 2 v-yes-1 Yamaguchi sarcoma viral related oncogene homolog 2
Search outside databases for aliases for LYN genePrevious GC identifers: GC08P055975 GC08P056731 GC08P056515 GC08P056842
Summaries for LYN (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Gene Wiki entry for LYN
Genomic Location for LYN
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the LYN gene Entrez Gene cytogenetic band: 8q13 Ensembl cytogenetic band: 8q12.1 HGNC cytogenetic band: 8q13 LYN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08P056954:
(about GC identifiers )
Start:
56,954,926 bp from pter
End:
57,086,493 bp from pter
Size:
131,568 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000008.9 NT_008183.18 Proteins for LYN
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LYN_HUMAN, P07948 (See
protein sequence )Recommended Name: Tyrosine-protein kinase Lyn Size : 512 amino acids; 58574 Da
Subunit : Interacts with phosphorylated LIME1 and with CD79A upon BCR activation. Interacts withEpstein-Barr virus LMP2A. Interacts with TGFB1I1. Interaction, via the SH2 and SH3, domains withMUC1 is stimulated by IL7 and, the subsequent phosphorylation increases the binding between MUC1and CTNNB1/beta-catenin. Interacts with PPP1R15A via the SH3 domain
PDB structure from and Proteopedia : 1W1F (3D)
 1WA7 (3D)
 
Secondary accessions : A0AVQ5Alternative splicing : 2 isoforms : P07948-1 P07948-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001104567.1 NP_002341.1 ENSEMBL proteins: ENSP00000385606 ENSP00000276497 Human Recombinant Proteins Invitrogen human recombinant proteins for LYN Millipore Purified and/or Recombinant LYN Protein Sigma-Aldrich Proteins for LYN R&D Systems Recombinant & Natural Proteins for LYN Enzo Life Sciences proteins for LYN Recombinant Proteins from Abcam (Lyn ) Human Recombinant Proteins from Abnova (LYN )
Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for LYN: Assays for LYN:
Protein
Domains/ Families for LYN(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P07948 ProtoNet protein and cluster: P07948
3 Blocks protein families : IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: LYN_HUMAN, P07948 Similarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamilySimilarity : Contains 1 protein kinase domainSimilarity : Contains 1 SH2 domainSimilarity : Contains 1 SH3 domain
Gene Function for LYN
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (LYN ) Millipore RNAi Products for the Analysis of LYN Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (LYN )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002350 Applied Biosystems Silencer ® siRNAs for LYN Sigma-Aldrich siRNA and siRNA Panels for LYN Sigma-Aldrich shRNA Panels and shRNA for LYN Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001111097                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001111097                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001111097  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002350 UniProtKB/Swiss-Prot: LYN_HUMAN, P07948 Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.2
Genatlas biochemistry entry for LYN :Yamaguchi sarcoma viral (v-yes-1) related oncogene homolog,highly expressed in the central nervoussystem,physically linked to AMPA receptor and activated following stimulation of the receptor,thenactivating the MAP Kinase pathway
7 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Lyn) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
About this table
Pathways & Interactions for LYN
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/9 Sigma-Aldrich "Your Favorite Gene" Pathways for LYN (Your Favorite Gene powered by Ingenuity) (see all 9
) Gene Network CentralTM Interacting Genes and Proteins Network for LYN 5/29 Interacting proteins for LYN (P07948 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 29
)Interactant Interaction Details GeneCard External ID(s) ENSG00000206300 P67870 1 , 2 EBI-79452, EBI-348169 MINT-62610 MINT-62708 MINT-62784 ENSG00000206406 P67870 1 , 2 EBI-79452, EBI-348169 MINT-62610 MINT-62708 MINT-62784 CSNK2B P67870 1 , 2 EBI-79452, EBI-348169 MINT-62610 MINT-62708 MINT-62784 EBI-79452, EBI-348169 MINT-62610 MINT-62708 MINT-62784 KHDRBS1 Q07666 1 , 2 EBI-79452, EBI-1364 MINT-17535 EBI-79452, EBI-1364 MINT-17535 CD22 P20273 1 EBI-79452, EBI-78277
About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
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Drugs & Compounds for LYN (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for LYN
Compounds for LYN available from Tocris Bioscience 10/37 Novoseek chemical compound relationships for LYN gene (see all 37
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
88.01
412
8666899 (5), 9573010 (4), 11053250 (4), 11443118 (4) (see all 99 )
pp55
72.35
1
9195899 (1)
phosphatidylinositol
63.75
19
1371009 (2), 10844001 (1), 11694268 (1), 15287886 (1) (see all 15 )
phosphotyrosine
62.27
3
10764829 (1), 7525568 (1), 8709147 (1)
3-tyrosine
58.18
1
12763027 (1)
phosphatidylinositol-3,4,5-trisphosphate
55.06
1
7650013 (1)
piceatannol
47.02
1
9723676 (1)
threonine
46.35
4
14570903 (1), 9784629 (1), 16110156 (1), 10432313 (1)
phosphoinositide
45.54
5
12871380 (1), 15252124 (1), 19290925 (1), 11781242 (1)
wortmannin
36.61
1
8534912 (1)
About this table
Transcripts for LYN(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (LYN ) Millipore RNAi Products for the Analysis of LYN Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (LYN )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002350 Sigma-Aldrich siRNA and siRNA Panels for LYN Sigma-Aldrich shRNA Panels and shRNA for LYN Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001111097 NM_002350
REFSEQ mRNAs for LYN gene (2 alternative transcripts): NM_001111097.1 NM_002350.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001111097 NM_002350
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001111097                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001111097                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_001111097  
Additional cDNA sequence: AK130135.1 AK290494.1 AK298677.1 BC059394.1 BC068551.1 BC075001.2 BC075002.2 BC126456.1 BC126458.1 CR621022.1 M16038.1 M79321.1
6 DOTS entries : DT.101982560 DT.451584 DT.100815202 DT.75166039 DT.99997760 DT.40218716
24/296 AceView cDNA sequences (see all 296
):AW074020 BM673476 AI073988 AI523491 BQ055093 BF974154 CR621022 BE397325 CB156199 AI868434 AI243743 BM907457 CB243846 BE676081 BM909567 AW137620 BF727023 BQ012823 AW572623 BQ711318 BX479795 CK819543 AI082800 CA748533
highest scoring ESTs for LYN :M16038 M79321 AA019107 AA075628 AA213832 AA278894 AA287863 AA341009 AA383926 AA385906
Unigene Cluster for LYN: V-yes-1 Yamaguchi sarcoma viral related oncogene homolog Hs.699154 [show with all ESTs ] Unigene Representative Sequence: NM_002350 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for LYN ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16a · 16b SP1 :     -   -     -                 -                 SP2 :                           -                 SP3 :     -   -                                     SP4 :                                           SP5 :                                          
About this scheme ECgene alternative splicing isoforms for LYN 2 Ensembl transcripts including schematic representations : ENST00000403181
ENST00000276497
Expression for LYN
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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LYN expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LYN 1 / 2 / 3
10 probe-sets matching LYN gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATGTGTTTCASOURCE GeneReport for Unigene cluster: Hs.699154 Expression variation in blood from EXPOLDB for LYN
UniProtKB/Swiss-Prot: LYN_HUMAN, P07948 Tissue specificity : Expressed in primary neuroblastoma tumors
Orthologs for LYN
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LYN gene from 5/11 species (see all 11
)
About this table Species with no ortholog for LYN ENSEMBL Gene Tree for LYN Paralogs for LYN (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for LYN gene LCK 2 BLK 2 HCK 2
SNPs/Variants for LYN (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for LYN (up to first 250kb)
Disorders & Mutations for LYN
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 165120 10/26 Novoseek disease relationships for LYN gene (see all 26
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
myeloid leukemia chronic
57.69
3
18235045 (2), 17432977 (1)
myeloid leukemia
31.70
1
7512079 (1)
leukemia
30.18
3
17344919 (1), 7636265 (1), 15175350 (1)
lymphoblastic leukemia acute
28.78
8
10720701 (2), 17344919 (2), 10658677 (2)
leukemogenesis
25.16
1
15781338 (1)
myeloma
24.63
2
7831290 (1), 10201980 (1)
lymphoma
23.83
7
8264235 (2), 18070987 (2), 17640867 (1), 8688094 (1) (see all 5 )
lymphocytic leukemia chronic b-cell
20.42
1
18768392 (1)
lupus erythematosus systemic
20.24
2
15022330 (1), 16320343 (1)
leukemia t-cell
18.98
1
1379847 (1)
About this table Human Gene Mutation Database : LYN Human Genome Epidemiology Navigator: LYN (16 documents) Tumor Gene Database : LYN
Medical News for LYN (Possibly Related Articles in
Doctor's Guide )
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Publications for LYN (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/584 PubMed articles for LYN gene (see all 584
): The yes-related cellular gene lyn encodes a possible tyrosine kinase similar to p56lck. (PubMed id 3561390) 2, 3, 4 Yamanashi Y.... Toyoshima K. (1987) Integral membrane protein 2 of Epstein-Barr virus regulates reactivation from latency through dominant negative effects on protein-tyrosine kinases. (PubMed id 7895172) 1, 3, 4 Miller C.L.... Kieff E. (1995) Expression of the B cell-associated tyrosine kinase gene Lyn in primary neuroblastoma tumours and its modulation during the differentiation of neuroblastoma cell lines. (PubMed id 1510669) 1, 3, 4 Bielke W.... Miescher G.C. (1992) Paxillin family members function as Csk-binding proteins that regulate Lyn activity in human and murine platelets. (PubMed id 17233630) 1, 3, 4 Rathore V.B.... Newman D.K. (2007) Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. (PubMed id 17192257) 3, 4 Wissing J.... Daub H. (2007) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) DF3/MUC1 signaling in multiple myeloma cells is regulated by interleukin-7. (PubMed id 12750561) 3, 4 Li Y....Kufe D. (2003) Interaction between growth arrest-DNA damage protein 34 and Src kinase Lyn negatively regulates genotoxic apoptosis. (PubMed id 11517336) 3, 4 Grishin A.V....Corey S.J. (2001)
Search for LYN
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Genome Databases showing LYN
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing LYN
(According to HUGE )
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--
Specialized Databases showing LYN (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for LYN (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for LYN:
Antibodies & Assays for LYN  
Recombinant Proteins (Lyn ) Antibodies (Lyn )
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Antibodies for LYN
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009